mRNA_H-elongata_contig54731.12866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54731.12866.1
Unique NamemRNA_H-elongata_contig54731.12866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 3.950e-118
Identity = 177/228 (77.63%), Postives = 195/228 (85.53%), Query Frame = 1
Query:  235 LAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCGAKYCRRDCQVRDWKTNHKVMCRQLREMRAGP-GGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKDALQLNLDDT 915
            LAG+KATAR PPGLCLA+CQ A C  TE P G  F CC+KCGAKYC R+CQV DWK +HK MC QL+EMR G  GG R PLDRQSVVARVL +VRLYLCPFAVCHGEA GRGFVFVQTPN VLELEYLRPVNSNGRRLDRS+ILHFLSMGEFVDAV++DDFEL VIR PL+ AV++YD K E+VVL RARCGYMAVV +PLVP + VCRQL +EY+EKDALQLNLDDT
Sbjct:   73 LAGEKATARAPPGLCLASCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVIDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEYKEKDALQLNLDDT 300          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA)

HSP 1 Score: 277 bits (709), Expect = 6.450e-85
Identity = 135/229 (58.95%), Postives = 170/229 (74.24%), Query Frame = 1
Query:  226 IVKLAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCGAKYCRRDCQVRDWKTNHKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKDALQLNLDD 912
            + +L+GDKA A+ PPGL L  CQ   C NTET  G  F  C+ CG++YC R+CQV DWK+ HK MC QL+ + AG       +D++  V+R LSKVRLYLCPFAVCHG A G GFVFVQ+PN++LEL Y+ PV S GR L RSL+LH++S GEFV+AVM+DDFEL  +R PL+ A+ A D ++EVVVL+RARCGY+ VV +PLVPE  VCR LA +Y  +DALQLNLD+
Sbjct:   54 LFELSGDKAVAKAPPGLQLHKCQKPTCENTETMGGKPFNQCSGCGSRYCCRECQVSDWKSLHKPMCAQLKALSAG-----AKVDKRDAVSRTLSKVRLYLCPFAVCHGSAIGPGFVFVQSPNSLLELNYMGPVTSAGRALQRSLVLHYMSPGEFVEAVMQDDFELMTVRTPLEAAIAAADAQREVVVLMRARCGYICVVTMPLVPEIAVCRALAGDYEGRDALQLNLDE 277          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A448ZP53_9STRA (MYND-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP53_9STRA)

HSP 1 Score: 165 bits (417), Expect = 7.830e-43
Identity = 88/197 (44.67%), Postives = 127/197 (64.47%), Query Frame = 1
Query:  346 CAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLD---RQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY---REKDALQLNLDD 912
            CA+CG A YC R+CQ  DWK   HK+ C     +       +TPLD   ++++   + +++R Y+CP+AV      G GF+F+Q+  T+ +L    P +  GR + RS++LHFL++GEF   V +DDFEL ++R PLK AV++YDP+KEVV+L R RCG MA+    LVP++P+C+QLA +Y       ALQLNLDD
Sbjct:   66 CARCGVAAYCSRECQAGDWKAGRHKMACPSYARVA------KTPLDGDTKKAIRNELFARIRFYVCPYAVHRTAELGSGFLFLQSDRTLRDLSPYIPKDCTGRAIVRSVLLHFLTLGEFDSEVCKDDFELAMMRTPLKEAVESYDPEKEVVLLCRFRCGNMALGRAVLVPDYPICKQLAKDYYTGNTAGALQLNLDD 256          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.900e-40
Identity = 81/194 (41.75%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  346 CAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD---ALQLNLDD 912
            C KC  A YC RDCQ+ DWKT  HK+ C     +   P   +T   +Q +   +  ++R Y+CP+AV      GRGF+F+QT  T+ +L    P +  G  + RS++LHFL++GEF   V ++DFEL ++R PLK A+D+Y+ +KEVV+L R RCG M++    LVP++ +C++L  +Y  ++   A+QLNLDD
Sbjct:   36 CGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARVAQTPISDKT---KQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQTDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDYYAENPAGAVQLNLDD 226          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 9.490e-40
Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 1
Query:  304 CGNTETPNGPAFLCCAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD---ALQLNLDD 912
            C    T        C+KCG A YC R+CQ++DWK   HK+ C     +   P   +T   ++++   + +++R Y+CP+AV      GRGF+F+QT  T+ ++    P +  G  + RS++LHFL++GEF   V R DFEL ++R PLK AV+ YD ++EVV+L R RCG M++    LVP++ +C++L  +Y  ++   ALQLNLDD
Sbjct:   42 CFGCGTKTAEKLSKCSKCGVAAYCSRECQIQDWKAGRHKMACPSYARVAKAPLCDKT---KETIRNELFARIRFYVCPYAVFRTAELGRGFLFLQTDRTLEDMSLYIPKDCTGHTITRSVLLHFLTLGEFDSEVCRTDFELALMRTPLKEAVETYDTEQEVVLLCRYRCGNMSLGRAALVPDYRICKKLGQDYYSENSAGALQLNLDD 246          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S2A9V4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9V4_TRICV)

HSP 1 Score: 146 bits (368), Expect = 6.880e-36
Identity = 88/195 (45.13%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  361 AKYCRRDCQVRDWKTN----HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRL--DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYRE-----KDALQLNLDD 912
            A YC RDCQV DWK+     HK  C   R +       RT  D+ +    VL +VR Y  P+AV      GRGF+FVQ+  T+ EL    P   +GR L  +RS+++HFL+MGE+   V RDDFE+  +R  LK AV AYD +KE  VLVR RCG++AV    LVPE+ VC+ L  EY +     + ++QLNLDD
Sbjct:   75 APYCSRDCQVSDWKSGTGGGHKHHCASYRRV-GTEFALRTDDDKAAARDEVLRRVRFYAFPYAVHRSSTLGRGFLFVQSGCTLAELSLPNPKRPDGRPLGRERSVLMHFLTMGEYDLEVCRDDFEMASVRGELKDAVKAYDERKEAAVLVRFRCGHVAVGLATLVPEYGVCKALGREYYQGTVGAEGSVQLNLDD 268          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.060e-36
Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query:  145 AGPTLF*QSYHPATPSPLQ*FPRLYIYIVKLAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVV-ARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDR-SLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD----ALQLNLDD 912
            A  T   Q+   +TPS L+     ++   +L  ++A   V P     +C H  CG  E+ N     C +KC  AKYC RDCQV DWK   HK++C+  + +      +    D ++ V A + +++R Y CP+AV      G+GF+FVQ+  ++ +L    P +  G  + R S+++HFL++GE+   V RDDFE+   R  L   V+ YD +KEVV+L R RCG++AV    LVP++ +C+QL  +Y + +    A+QLNLD+
Sbjct:   22 AASTANIQNPLASTPSSLR-----WVQAFELGYNEAPKTVEP-----SCFH--CGKHESENAKLSKC-SKCQTAKYCSRDCQVNDWKDGRHKLVCKSYQRLN---DDFDNNADAKAAVRAELYARIRFYACPYAVHKTTQLGKGFLFVQSNMSLRDLSIPIPKDVTGVAMPRRSILMHFLTLGEYDSEVCRDDFEMAEARTKLSQIVEEYDEEKEVVLLYRMRCGHVAVGRAVLVPDYGICKQLGRDYYDSNNSAGAVQLNLDE 269          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.650e-34
Identity = 87/213 (40.85%), Postives = 124/213 (58.22%), Query Frame = 1
Query:  346 CAKCG-AKYCRRDCQVRDWK------TNHKVMCRQLREMRAGPGGYRT-PLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEY---LRPVNSNGRRL------DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY------REKDALQLNLDDT 915
            C+KC  A+YC RDCQV DWK      T HK  C  L+  R G     T P D+ S    ++ ++R Y CP+AV      GRGF+F+Q  +T+ E+     L P+++            RS++LH+L++GEF   V RDDFEL  +R  LK AVD++D +K++VVL+R RCG++AV   PLVP++ +C+ L  +Y          A+QLNLDD 
Sbjct:   72 CSKCHVARYCSRDCQVADWKKSPNGGTAHKFTCAALK--RVGIHMQITSPDDQASARQDIVFRIRFYACPYAVNKSITLGRGFLFLQGTSTLAEMSLPTTLNPLHNXXXXXXXXXVKQRSVLLHYLTLGEFDSEVCRDDFELATVRDRLKQAVDSHDIEKDMVVLMRFRCGHVAVGTAPLVPDYGLCKSLGQQYYGTGEGASSGAIQLNLDDV 282          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A1Z5JUW9_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUW9_FISSO)

HSP 1 Score: 139 bits (351), Expect = 5.730e-34
Identity = 86/195 (44.10%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  346 CAKCG-AKYCRRDCQVRDWKTNHKVMCRQLREMRAGPGGYRTPLDRQSVVAR--VLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREK---DALQLNLDD 912
            C++C  A YC ++CQ++DWK  HK  C   + + A  G + TP D  S  AR  VL ++RLY  P+AV   +A GRGF+F+Q+  T+  L         GR  +RS++LH+L++GE+   V RDDFEL  +R  L+ AV+ YD ++++VVL+R RCG++AV  IPL  EF VC QL  EY +     AL+L LDD
Sbjct:   48 CSQCHVATYCSKECQIQDWKQRHKKYCAAYQRIDA-QGRWNTP-DDDSAHARHHVLHQIRLYAMPYAVYQMQALGRGFLFIQSTQTLAALTL------PGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLDD 232          
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: B8BQB8_THAPS (MYND-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQB8_THAPS)

HSP 1 Score: 138 bits (348), Expect = 4.420e-33
Identity = 85/221 (38.46%), Postives = 126/221 (57.01%), Query Frame = 1
Query:  289 CQHADCGNTETPNG-PAFLCCAKCG-AKYCRRDCQVRDWK-----TNHKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRL--DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY----REKDALQLNLDD 912
            C H  CG +    G P    C+KCG A YC RDCQV +WK       HK +C   + +        +  D+ S    +LS++R Y  P++V      GRGF+F+Q+ +++  L    P  SNG++    RS++LH+L+M EF   V  +DFEL  ++K LK AV++Y+ + EV VL+R RCG++AV   PLVP+  +C+ L  EY    +   A+QLN+DD
Sbjct:   57 CFH--CGKSAEEGGVPKLSRCSKCGVACYCSRDCQVTNWKGGDGVVGHKFLCAAYKRVGEDMMIIFSD-DKDSARQDILSRIRFYAFPYSVHKSSIVGRGFLFLQSDSSLAVLSLPAPTMSNGKKYPKQRSVLLHWLTMKEFSSEVCMEDFELASVQKELKSAVESYNEEVEVPVLMRFRCGHVAVGIAPLVPDIKLCKMLGKEYYGSGKGSGAVQLNIDD 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G3E6_ECTSI3.950e-11877.63MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z3P7_9STRA6.450e-8558.95MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A448ZP53_9STRA7.830e-4344.67MYND-type domain-containing protein n=1 Tax=Pseudo... [more]
A0A1E7FEW3_9STRA3.900e-4041.75MYND-type domain-containing protein (Fragment) n=1... [more]
A0A7S0UGY3_9STRA9.490e-4039.42Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2A9V4_TRICV6.880e-3645.13Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0F684_9STRA7.060e-3635.98Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2R2L0_9STRA1.650e-3440.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5JUW9_FISSO5.730e-3444.10MYND-type domain-containing protein n=1 Tax=Fistul... [more]
B8BQB8_THAPS4.420e-3338.46MYND-type domain-containing protein n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54731contigH-elongata_contig54731:828..3549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.8
Seed ortholog evalue4.3e-70
Seed eggNOG ortholog2880.D7G3E6
EggNOG OGs2CYFZ@1,2S44W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006550.1
Exons4
Model size2023
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54731.12866.1prot_H-elongata_contig54731.12866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54731 1477..2444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.176342-UTR-H-elongata_contig54731:827..12141622930892.176342-UTR-H-elongata_contig54731:827..1214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 828..1214 +
1691679614.1304092-UTR-H-elongata_contig54731:827..12141691679614.1304092-UTR-H-elongata_contig54731:827..1214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 828..1214 +
1622930892.1949923-UTR-H-elongata_contig54731:1446..14761622930892.1949923-UTR-H-elongata_contig54731:1446..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 1447..1476 +
1691679614.1523657-UTR-H-elongata_contig54731:1446..14761691679614.1523657-UTR-H-elongata_contig54731:1446..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 1447..1476 +
1622930892.2638338-UTR-H-elongata_contig54731:2444..35491622930892.2638338-UTR-H-elongata_contig54731:2444..3549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 2445..3549 +
1691679614.1909304-UTR-H-elongata_contig54731:2444..35491691679614.1909304-UTR-H-elongata_contig54731:2444..3549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54731 2445..3549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.2134366-CDS-H-elongata_contig54731:1476..16411622930892.2134366-CDS-H-elongata_contig54731:1476..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 1477..1641 +
1691679614.1632116-CDS-H-elongata_contig54731:1476..16411691679614.1632116-CDS-H-elongata_contig54731:1476..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 1477..1641 +
1622930892.2298353-CDS-H-elongata_contig54731:1921..20621622930892.2298353-CDS-H-elongata_contig54731:1921..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 1922..2062 +
1691679614.1743739-CDS-H-elongata_contig54731:1921..20621691679614.1743739-CDS-H-elongata_contig54731:1921..2062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 1922..2062 +
1622930892.2460837-CDS-H-elongata_contig54731:2249..24441622930892.2460837-CDS-H-elongata_contig54731:2249..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 2250..2444 +
1691679614.183095-CDS-H-elongata_contig54731:2249..24441691679614.183095-CDS-H-elongata_contig54731:2249..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54731 2250..2444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54731.12866.1

>prot_H-elongata_contig54731.12866.1 ID=prot_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRG
FVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFE
LEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLA
VEYREKDALQLNLDDT*
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mRNA from alignment at H-elongata_contig54731:828..3549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54731.12866.1 ID=mRNA_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2722bp|location=Sequence derived from alignment at H-elongata_contig54731:828..3549+ (Himanthalia elongata Himel1 dioecious)
TGGTTTAAGTAAATACGAACTGTAAGCCAACGCCTGACGCTGCGCTATCC TTAAGGGTGTTATCGCAGTCGCACTGTAGGATTCTAGCGCGCTCAAAACG TGTTTCCTTGCATTCGTCGCCAGCAGAAAGATTAGCTCCCATACGCTGGG CCGACCCTTTTCTGACAGTCTTACCACCCTGCTACGCCCTCACCCCTCCA ATAATTTCCTCGACTATATATATATATTGTGAAGCTGGCCGGAGACAAGG CTACCGCACGCGTGCCACCAGGGCTGTGCCTGGCCAACTGCCAACACGCT GATTGCGGGAACACGGAAACACCGAACGGACCGGCGTTCTTATGCTGCGC CAAGTGTGGCGCGAAGTACTGCCGCCGTGACTGCCAGGTTTGGATGCGCT CTTCCTGATCCCCCACCCTTCGGGTTTTCGCTTTTGACGATATCGAGCTG TCACGCGTCATGATGTCTCGAAGCAAAATATATATCGTTTGGCACCTCTT CGATCATATCTCTGTAATCGGTCATTTTTTTATTTTTTTTTATCGACGTC AAATAGATGGATGCGCACTTTATTGCACACGCAGTTTTTGTACGATCTGA CGCCTCAAACGTCCACCAGGTTCGCGATTGGAAGACGAACCATAAGGTAA TGTGCAGACAACTCCGAGAGATGCGAGCAGGGCCCGGTGGTTACAGGACC CCGCTCGATCGTCAGAGCGTGGTGGCGCGAGTGCTCTCGAAGGTTCGACT CTACCTGTGCCCGTTCGCGGTCTGCCACGGGGAGGCACAAGGCCGTGGGT TCGTCTTCGTGCAGGTGAGGGGGGAATTTAGTAGGAACGAGCTAAGAAGA GATGGAAGGGAAAATAGCCCCCCCCCCCACATACATTTTGTTTAATAGTA GGTATTAATATGAAAGATAAAGCGTACAGAGAAGGCTAGGCGTATTCGCG GGCGCCTTTTTTCTCGCTCAGGATGCGCGGCAACTATTTCTTGAAAAAGA CGTCTAGATGCGCCCTCGTGATCCCCTTCCTCGTGACAGTGCCCGCCTAA CCACGCATGCTCTCTACCGCCCTGGCCGCCGCGATCTTGTTCAGACGCCC AACACTGTGTTGGAACTCGAGTACCTGCGGCCGGTGAACAGCAACGGGCG AAGGCTCGACCGGTCCCTGATACTTCACTTCTTGAGCATGGGAGAGTTCG TCGACGCGGTCATGCGGGACGACTTCGAGCTGGAGGTGAAAGGTTTTGTC TCGTGGTGGTGGGGAGGCAGGGATGATATTTGCTTTCGTTTGACGGCTAC GCAAGCTGTGATATTCAATATTTCCCGTGTATGATGTTGCCGCGTGTTCA ATCGGATTGAGCGCACGCGCTCCAAATTTGCTTTAACTCTGTCCGGAATA CATTGTAATGGCCAACATCTAGGTGATCCGGAAACCTCTTAAGGTCGCGG TGGACGCGTACGACCCCAAAAAGGAGGTAGTGGTGTTGGTGAGAGCTCGA TGCGGCTATATGGCGGTAGTGAATATTCCCCTCGTGCCGGAGTTCCCCGT GTGCCGTCAACTGGCCGTGGAGTACAGGGAGAAGGATGCGTTACAGCTCA ACCTCGACGACACCTGACGGCGGTTTGCGATCATTATTTGCGGATTTGAA AGAGCTCGAGGAGGTCGAAGATTTTCATTTGTCGTGGACTATTGTGACTC TAAAACTAGTTTTAATTCTTTCGCGTGGTGTGCTTATATTATCGGGCTTC ACACAAAAAAAGTTGATCTGAGCGTTAGCTACCGCTCGATGCCGACGACG ATGTCCTTGTGACGGAGAACCTCACAGTCTTGAGTGTTCGACGTACTATA TGGATCGCTGTTCGTCGCATTATCCTGTACGTATGCTGCACCGTCGCTTC CGCACACATGATGGTAATCAATCGACATAAGGTGTGGTCGAGGTTGCTGC CGACAAGCAAGCGCGGTTCGATGTCGCCGTTCACGAATCAATACGTTGTA TTTCCAATCGTATCCTTTAAATAGCTTTCAAATAACATGTTATAGCGTGA AAGCTGGGGCTACGCCGGTGATATGTGCTTTGGTAATACTGGTTGTTTTG TCCGTTGATGAGCGCATAAGACTATCGTGGCTGATAGAACCGAGGTTACG AAGGTTCATACTTTATTTTCGCCCACTTCGGACTTTCCTATACTGTAGGC AAGTAGTTAATCTCCATGTTTCCTATCGGAAAAAAAGGCTTCCATTACTG CCTTAATTAATGAGGATGTCACTTCGTGATGCATCCGAGTTTTTATTAAA AAAAGAAACTCGAACTCATTCCAACCCTCCGAACATCCACACCTTCTTAG CACCATAAGATTATTGTGTGAGTTGGAAGACGACCTCTCGTGCAGTATCT GCCAACGGCCATCACGCGTTTTTATTTTTTCATGTTGATTGGGCCAGCTT CGTTCGTTCCTTGTTTGTTTCTGACATGATGCCCATGTGGCCAATCAACG TGCTAGGTCATCAATTTTACCACCGCTTTGAACGTTGCCAAATACCGCCT ATGGTACGGAGTGAAGAGAAGTAAGTAGTATTGCTTTCTTGAGAGTCATA TATACGGAATATATGGATATGTTACTACCAATAATAGGGTATCAGGATGG TTTCCCAGGTATTGCTTTGGATTTTATTCAGGGTACCCGGGTTTATCTTG TGACGTGTTTTCCGCATAATTC
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Coding sequence (CDS) from alignment at H-elongata_contig54731:828..3549+

>mRNA_H-elongata_contig54731.12866.1 ID=mRNA_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig54731:828..3549+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAGACAACTCCGAGAGATGCGAGCAGGGCCCGGTGGTTACAGGAC
CCCGCTCGATCGTCAGAGCGTGGTGGCGCGAGTGCTCTCGAAGGTTCGAC
TCTACCTGTGCCCGTTCGCGGTCTGCCACGGGGAGGCACAAGGCCGTGGG
TTCGTCTTCGTGCAGATGTGCAGACAACTCCGAGAGATGCGAGCAGGGCC
CGGTGGTTACAGGACCCCGCTCGATCGTCAGAGCGTGGTGGCGCGAGTGC
TCTCGAAGGTTCGACTCTACCTGTGCCCGTTCGCGGTCTGCCACGGGGAG
GCACAAGGCCGTGGGTTCGTCTTCGTGCAGACGCCCAACACTGTGTTGGA
ACTCGAGTACCTGCGGCCGGTGAACAGCAACGGGCGAAGGCTCGACCGGT
CCCTGATACTTCACTTCTTGAGCATGGGAGAGTTCGTCGACGCGGTCATG
CGGGACGACTTCGAGCTGGAGACGCCCAACACTGTGTTGGAACTCGAGTA
CCTGCGGCCGGTGAACAGCAACGGGCGAAGGCTCGACCGGTCCCTGATAC
TTCACTTCTTGAGCATGGGAGAGTTCGTCGACGCGGTCATGCGGGACGAC
TTCGAGCTGGAGGTGATCCGGAAACCTCTTAAGGTCGCGGTGGACGCGTA
CGACCCCAAAAAGGAGGTAGTGGTGTTGGTGAGAGCTCGATGCGGCTATA
TGGCGGTAGTGAATATTCCCCTCGTGCCGGAGTTCCCCGTGTGCCGTCAA
CTGGCCGTGGAGTACAGGGAGAAGGATGCGTTACAGCTCAACCTCGACGA
CACCTGAGTGATCCGGAAACCTCTTAAGGTCGCGGTGGACGCGTACGACC
CCAAAAAGGAGGTAGTGGTGTTGGTGAGAGCTCGATGCGGCTATATGGCG
GTAGTGAATATTCCCCTCGTGCCGGAGTTCCCCGTGTGCCGTCAACTGGC
CGTGGAGTACAGGGAGAAGGATGCGTTACAGCTCAACCTCGACGACACCT
GA
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