mRNA_H-elongata_contig54718.12864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54718.12864.1
Unique NamemRNA_H-elongata_contig54718.12864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 5.820e-130
Identity = 189/268 (70.52%), Postives = 209/268 (77.99%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDD-----SSSGDMSYRL 789
            M+RT   A+A  ML   A AL+V TPS+GL VI+DRTYTVEW    S +RFEIDLYYCGS C+ED+CG+WVTALCPYG  GCPDNEGDYD+VMPEPM  TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A    EYTVEFDYDNGVGSSVDRF IDLY A G GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT AG YKIRV RFEDD L+ CS  F + EGD  D       +  +SYR 
Sbjct:    1 MTRTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 1.250e-126
Identity = 186/259 (71.81%), Postives = 209/259 (80.69%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDM 777
            M+RT   A+A +ML   A ALEV+TPS  L+V++DRTYTVEW   DSG RFEIDLY+CGS C+ED CG+WVTALCPYG  GCPDNEGDYD+VMPEPMS  S SGYKVRVMDV+DE  +DCSD FYLMAS+++P  G E G  L+VTSPAEGD A AGEEYTVEFDYDNGVGS VDRF IDLY A G GDCGTYV SICDKPSIGCKDSMGDYDVEIP DT AG YKIRVGRFED++L+ CS  F ++ GD D+S S D 
Sbjct:    1 MARTGFVALACAMLG-AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD-DESMSYDF 256          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 4.420e-122
Identity = 169/245 (68.98%), Postives = 197/245 (80.41%), Query Frame = 1
Query:   52 ARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYR 786
            A ALEV+TP+EG +V++ R YTVEW    S +R+EIDLYYCGS C+EDECG+WVTALCPYG  GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+D+   DCSDEFYLMA  E+P  GD  GP ++VTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY A+GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  AGMY IRVG FEDD ++ CSD FE++  D D    GD+   
Sbjct:    5 ASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGAD-DSPDDGDLDME 248          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 2.830e-121
Identity = 179/263 (68.06%), Postives = 205/263 (77.95%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYRL 789
            M RT   A+A  ML   A ALEV+TP+ G +V+S R YTVEW+   S  RFEIDLYYC S C+EDECGEWVTALCPYG  GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+DE   DCSDEFYLMA  ++P   D  GP ++VTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY A+GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED  AGMY IRVG FED+ ++ CSD FE++   G D SS  MSYR 
Sbjct:    2 MVRTGFVALACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL---GADDSS--MSYRF 258          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 2.200e-110
Identity = 167/264 (63.26%), Postives = 204/264 (77.27%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYE-ASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYRL 789
            M+RT   A+A  ML   A ALEV++P+ G+ VI+DRTYTVEW  G S SRFEIDLYYCGS+C+EDECG+WVTALCPYG+ GCPD +GDYD+VMPEPM+ TS SGYKV V D NDES + CS +F L+AS ++P  G E G +L+VTSP++GD A+AG  YTVE+DY+NG+GSS DRF IDLY   +G+GDCGTYV ++CDKPSIGC DS GDYDVEIP DT AGMY +RVG F DD +FDCS+ FE++      +   DMS RL
Sbjct:    1 MARTAFAALAFGMLG-AANALEVVSPAAGISVIADRTYTVEWT-GTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV------NDRTDMSMRL 254          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 4.780e-109
Identity = 163/249 (65.46%), Postives = 194/249 (77.91%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEG 747
            M+RT   A+A  ML   A ALEV++P+ G +V++D  YTVEW    SG R++IDLYYCGS C+EDECG+WVTALCPYG  GCPD +GDYDVVMPEPM  TS SGYKV V D +DESD  CS +F L+AS E+P   D  G  +SVTSP++GD A+AG EYTVEFDYDNG+GSSV+RF IDLY + GSGDCGTYV +ICDKPSIGCKDS GDYDV IP  T +GMY IRVG FEDDD++ CSD+FE++ G
Sbjct:    1 MARTAFAALAFGMLG-AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG 245          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 9.760e-107
Identity = 157/250 (62.80%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGD 750
            M+RT   AVA  ML+  A ALEV++P  G+ V++DR YTVEW  G +  RFEIDLYYC S+C++D CG+WVTALCPYG+ GCPD+ GDYD++MPEPMS TS SGYKV V +  DESD+ CSD+F L+AS+++P  G E G +L+VTSP++GD A+AGE YTVE+DY+NG GSS DRF +DLY   G+GDCGTYV ++CD+PSIGC DS GDYDVEIP DT AGMY IRVG F+D+ ++DCSD FEV   D
Sbjct:    1 MARTAFAAVAFGMLS-AANALEVVSPDGGISVLADRAYTVEWT-GTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 1.910e-106
Identity = 160/236 (67.80%), Postives = 181/236 (76.69%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDS----MGDYDVEIPEDTTAGMYKIRVGRF 696
            M+RT   A+A  ML   A AL+V TPS+GL VI+DRTYTVEW    S +RFEIDLYYCGS C+ED+CG+WVTALCPYG  GCPDNEGDYD+VMPEPMS TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A    EYTVEFDYDNGVGS VDRF IDLY A G GDCGTYV SICDKP+IGCKDS     G + V+       G + + V R+
Sbjct:    2 MARTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 4.720e-94
Identity = 145/196 (73.98%), Postives = 159/196 (81.12%), Query Frame = 1
Query:  187 VEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGD 774
            VEDECGEWVTALCPYGS GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+   D DCSDEFYLMAS E+PVVG  D P L VTSP+ GD A AG EYTVEFDYDNGVGS VDRFKIDLY   G+GDCGT+V+++CDK +IGCKDSMGDYDVEIPE    GMY IRVGRFEDD L+ CS  FE++      SSSG+
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG-----SSSGE 202          
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 4.200e-86
Identity = 143/249 (57.43%), Postives = 166/249 (66.67%), Query Frame = 1
Query:    1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEG 747
            M+RT   A+A  ML     ALEV +P+ G ++++  + TVEW  G S  RF+IDLYYCGS C+EDECG+WVTALCPYG  GCPD +GDYDVVMPEPM  TS SGYKV V D +DESD+ CS EF L+AS                                  FD+DNG GSSV+RF IDLY + GSGDCGTYV SICDK SIGCKDS GDYDV IP DT +GMY IRVG FED D+F CSD+FE+I G
Sbjct:    1 MARTAFAALAFGMLG-AVNALEVTSPAAGDMIVAASSTTVEWT-GTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGG 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE5.820e-13070.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI1.250e-12671.81EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D8LI46_ECTSI4.420e-12268.98EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFT9_9PHAE2.830e-12168.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F0_ECTSI2.200e-11063.26EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI4.780e-10965.46Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JY62_9PHAE9.760e-10762.80GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7FH21_ECTSI1.910e-10667.80Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JEJ8_9PHAE4.720e-9473.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE4.200e-8657.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54718contigH-elongata_contig54718:1284..3851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size792
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54718.12864.1prot_H-elongata_contig54718.12864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54718 1284..3851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.889199-CDS-H-elongata_contig54718:1283..14501622930891.889199-CDS-H-elongata_contig54718:1283..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 1284..1450 -
1691679614.0150244-CDS-H-elongata_contig54718:1283..14501691679614.0150244-CDS-H-elongata_contig54718:1283..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 1284..1450 -
1622930891.906967-CDS-H-elongata_contig54718:1893..20291622930891.906967-CDS-H-elongata_contig54718:1893..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 1894..2029 -
1691679614.0246508-CDS-H-elongata_contig54718:1893..20291691679614.0246508-CDS-H-elongata_contig54718:1893..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 1894..2029 -
1622930891.9251516-CDS-H-elongata_contig54718:2243..25401622930891.9251516-CDS-H-elongata_contig54718:2243..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 2244..2540 -
1691679614.0377288-CDS-H-elongata_contig54718:2243..25401691679614.0377288-CDS-H-elongata_contig54718:2243..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 2244..2540 -
1622930891.945204-CDS-H-elongata_contig54718:3363..34481622930891.945204-CDS-H-elongata_contig54718:3363..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 3364..3448 -
1691679614.055404-CDS-H-elongata_contig54718:3363..34481691679614.055404-CDS-H-elongata_contig54718:3363..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 3364..3448 -
1622930891.9606433-CDS-H-elongata_contig54718:3744..38511622930891.9606433-CDS-H-elongata_contig54718:3744..3851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 3745..3851 -
1691679614.0663762-CDS-H-elongata_contig54718:3744..38511691679614.0663762-CDS-H-elongata_contig54718:3744..3851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54718 3745..3851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54718.12864.1

>prot_H-elongata_contig54718.12864.1 ID=prot_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSR
FEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDT
SGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAE
GDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDK
PSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGD
GDDSSSGDMSYRL*
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mRNA from alignment at H-elongata_contig54718:1284..3851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54718.12864.1 ID=mRNA_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2568bp|location=Sequence derived from alignment at H-elongata_contig54718:1284..3851- (Himanthalia elongata Himel1 dioecious)
ATGTCGCGCACCATCTGCTTTGCTGTGGCCGTCTCTATGCTCGCTCGAGG AGCTAGAGCTCTTGAGGTTATCACTCCTTCTGAAGGGCTAGTCGTAATTT CTGACCGGTAAGCACGTCCGCAATAGGACAGGCTGAATGCGAACAGCTTT GGGGGCATTATCCAGCTTAGAGTTCACCCCACAATAACACCAGACCTCGT CGAATATTATTTGACCGGCTAACCAATGCTGTAGTCCTATATAATTGAAT ATATCGAACTCTCTAGTATTATGTAGTATAAGCCGTCACTTCTAAAGTAG ATTCGTAAAAACACGGTGCGCCCACATCCCGAGTTCTCGCGTCTGAACCT TCTCTTAAAAACATATGAACTAATTTCAATCTTCCAACACCGATCGATTG CAGAACGTACACTGTGGAGTGGAACGATGGTGACTCCGGGAGCCGCTTCG AGATCGACCTGTACTACTGCGGCTCTTATTGCGTCGAGGTAAAAACCCAT AGTATGTAATAAAGCAATTCACATAACATTCTCCTGTGTACCAAAATACA TAATCTACACGTAATGCTGTAATTGTTTTCCTCTTGTATTATGATCAGTT TGTTGCTGATAGCTTGACGAAATCAGCTGTGATCAGATTTAACTTACAGG AGGTTGAGTGTCTCCCATAACTTATTTTAGATATCACCCTAAGTAGCTGC CCGTGCTTGTCTCATCCGGCATTTATTCGTGCCTCTTGGTTACACGAGCC TCAATACATCGGGTCGTACACCTCGCCTTGATTATTATTTTTAAAAAAAC TTGAACTCATTCCAACCCTCTGAACATCCACACTTTCTTAGCGCCGTGAG AGGTGCCATCCAAGGGGCCAACTATTTTTATTTAAAAGACTTTATTGGAT GCGGTTGATAAAATAATTTCAGCCCGCTGCTGTTGTAAACAAACCAGAGT CGACTCGAGTTTCTGGACAGAGAAGGAGAGAGAAGAGTTTACGGTAGTAG TCGCGACACTGGTTGCGTTTCAAAATTTGATTACGCTTTGACTCTATAGG CTAATACGATAACACTGTATATCCCACGTTGTAAGGGTCTTATCCATCTC TCAGTTTACACCTAGTCGACAAACGTTCGAACTAGATGTCTGGTAAATGA TACGTTCCATTCAGCCGGAACCATCTCAAATATAATGAAAGAATGCAATT CAATTTGTTTCGCCGGTATTCGATTTCGGCAAATCAAAATCTTCGCCCGA CAATGAAAGACTCGTTTTTTACTTGTTCGTGCGTTCACATCCATTACTAC CACTCACGCAGGACGAATGTGGCGAATGGGTTACCGCGCTCTGCCCATAC GGATCGACGGGGTGTCCCGACAACGAAGGCGACTACGACGTCGTCATGCC TGAGCCCATGAGTGACACCTCCGGGTCCGGCTACAAGGTTCGCGTAATGG ACGTAAACGACGAGTCCGACGTTGACTGCTCGGACGAATTTTATCTCATG GCGTCGGACGAGTCACCTGTGGTTGGCGACGAGGACGGGCCTACCCTGAG CGTTACTTCCCCCGCTGAGGGCGACGTGGCCATCGCTGGCGAAGAGTACA CGGTTGAGGTGAGTAGTATAAAATTGCATGCCAAATGCACATCGATTCTT GGTTCGTGTTTGGTTTTAAGGTTTGGGCAACGATTCGCTTTATTTTTTGT TTCAGTTTGTCTACAGTAGATGTAGAAAATAGCGCTTGTATAAACCCCAT GTGGCTAAAGGTTTGAATGAAGTAACTGTTGACCTCGCCCTAAAATTCCT CTGTTTTTGCTTCGGCTTTCAGTTCGACTACGACAACGGCGTGGGCTCTA GTGTAGACCGATTCAAGATTGACCTCTACGAGGCCTCTGGCTCTGGAGAC TGCGGTACCTACGTCATCTCTATCTGCGACAAGCCCTCTATCGGGTGCAA AGACTCAAGTAAGTTTTCGTCGAGTTTAATTACAGAAAACAAAAGCTCGC ATGTGGCAGATTGTCAGATTAGAACCGTTGACTTCAACGTTGAAGTTGGC AGCTGGTCGTTCCGTCATGTAGTAGTTTTTCAGTTGCAAGTACAAAACCT GATTTCGGGATATAACGATAAAATCCTTTACAATGATTGATTGTTACCCT TTATTTTACCGAGCCTGGTGTGTAGATGTTCGGAGGAAATACGGAGACAG GGGAAAGTTATTTCCCTGTTCAACTGACCACGAGCAGAAGGCAACCAAAT CTGGTTGTTCCTTGTGCTGAAAGTGCGACCAACAACAACAAATGAGTTCA TATGTTTTTGTCAGCGCTCTCATTATTTTTCTTTATAAAGCGAACTCCAC ATTACCAAAAATGAAAATATATTTTACGTTTTTACGGTCGCTTGTCTGCA GTGGGCGACTACGACGTGGAGATCCCTGAGGACACGACGGCGGGCATGTA CAAGATCCGAGTCGGGCGCTTCGAGGATGACGATCTTTTCGACTGCTCCG ATGCTTTCGAAGTCATCGAGGGAGATGGCGATGATTCAAGCTCGGGCGAC ATGTCGTACAGGTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig54718:1284..3851-

>mRNA_H-elongata_contig54718.12864.1 ID=mRNA_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig54718:1284..3851- (Himanthalia elongata Himel1 dioecious)
ATGTCGCGCACCATCTGCTTTGCTGTGGCCGTCTCTATGCTCGCTCGAGG
AGCTAGAGCTCTTGAGGTTATCACTCCTTCTGAAGGGCTAGTCGTAATTT
CTGACCGATGTCGCGCACCATCTGCTTTGCTGTGGCCGTCTCTATGCTCG
CTCGAGGAGCTAGAGCTCTTGAGGTTATCACTCCTTCTGAAGGGCTAGTC
GTAATTTCTGACCGAACGTACACTGTGGAGTGGAACGATGGTGACTCCGG
GAGCCGCTTCGAGATCGACCTGTACTACTGCGGCTCTTATTGCGTCGAGA
ACGTACACTGTGGAGTGGAACGATGGTGACTCCGGGAGCCGCTTCGAGAT
CGACCTGTACTACTGCGGCTCTTATTGCGTCGAGGACGAATGTGGCGAAT
GGGTTACCGCGCTCTGCCCATACGGATCGACGGGGTGTCCCGACAACGAA
GGCGACTACGACGTCGTCATGCCTGAGCCCATGAGTGACACCTCCGGGTC
CGGCTACAAGGTTCGCGTAATGGACGTAAACGACGAGTCCGACGTTGACT
GCTCGGACGAATTTTATCTCATGGCGTCGGACGAGTCACCTGTGGTTGGC
GACGAGGACGGGCCTACCCTGAGCGTTACTTCCCCCGCTGAGGGCGACGT
GGCCATCGCTGGCGAAGAGTACACGGTTGAGGACGAATGTGGCGAATGGG
TTACCGCGCTCTGCCCATACGGATCGACGGGGTGTCCCGACAACGAAGGC
GACTACGACGTCGTCATGCCTGAGCCCATGAGTGACACCTCCGGGTCCGG
CTACAAGGTTCGCGTAATGGACGTAAACGACGAGTCCGACGTTGACTGCT
CGGACGAATTTTATCTCATGGCGTCGGACGAGTCACCTGTGGTTGGCGAC
GAGGACGGGCCTACCCTGAGCGTTACTTCCCCCGCTGAGGGCGACGTGGC
CATCGCTGGCGAAGAGTACACGGTTGAGTTCGACTACGACAACGGCGTGG
GCTCTAGTGTAGACCGATTCAAGATTGACCTCTACGAGGCCTCTGGCTCT
GGAGACTGCGGTACCTACGTCATCTCTATCTGCGACAAGCCCTCTATCGG
GTGCAAAGACTCAATTCGACTACGACAACGGCGTGGGCTCTAGTGTAGAC
CGATTCAAGATTGACCTCTACGAGGCCTCTGGCTCTGGAGACTGCGGTAC
CTACGTCATCTCTATCTGCGACAAGCCCTCTATCGGGTGCAAAGACTCAA
TGGGCGACTACGACGTGGAGATCCCTGAGGACACGACGGCGGGCATGTAC
AAGATCCGAGTCGGGCGCTTCGAGGATGACGATCTTTTCGACTGCTCCGA
TGCTTTCGAAGTCATCGAGGGAGATGGCGATGATTCAAGCTCGGGCGACA
TGTCGTACAGGTTGTAATGGGCGACTACGACGTGGAGATCCCTGAGGACA
CGACGGCGGGCATGTACAAGATCCGAGTCGGGCGCTTCGAGGATGACGAT
CTTTTCGACTGCTCCGATGCTTTCGAAGTCATCGAGGGAGATGGCGATGA
TTCAAGCTCGGGCGACATGTCGTACAGGTTGTAA
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