prot_H-elongata_contig54696.12862.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54696.12862.1
Unique Nameprot_H-elongata_contig54696.12862.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.280e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEE 51
            QVPG D GG FAPVCRLQSI M+L IAAE D D + LDV+T FL AD+EE+
Sbjct:  387 QVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEED 437          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 54
            QVPG D  G  APV RLQS+ M+L IAAE+D++   LDV+T FL AD+EE+V+V
Sbjct:  335 QVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFV 388          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.150e-8
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 54
            QVPG+D GG +APVCRLQSI M+  IA + + +   +DV T FL AD+ E V+V
Sbjct:  782 QVPGLDCGGTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 835          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.880e-7
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 54
            QVPG+D G  +APVCR+QS+ M+  I  E +  +D++  DV T FL AD++EEV+V
Sbjct:  202 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 255          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 54
            Q PG+D   +FAPV RL+S+H++L IAA   ++   LDV++ FL+ +++EEVYV
Sbjct:  993 QRPGVDYDEVFAPVARLESVHLLLAIAAXAGWEVHHLDVKSAFLNGELQEEVYV 1046          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 54
            QVPG+D G  +APVCR+QS+ M+  I  E +  +D++  DV T FL AD++EEV+V
Sbjct: 1223 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 1276          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 54
            QVPG+D G  +APVCR+QS+ M+  I  E +  +D++  DV T FL AD++EEV+V
Sbjct: 1388 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 1441          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 5.340e-7
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVY 53
            QVPGID    FAPV +L SI ++LT+AA  D++   +DV+ ++L+ D+EEE+Y
Sbjct:  819 QVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIY 871          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.340e-7
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 54
            QVPG+D G  +APVCRLQSI M+  IA + + +   +DV T FL AD+ E V+V
Sbjct:  908 QVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 961          
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0
Query:    1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 54
            QVPG+D G  FAPVCRLQSI M+   A + + +   +DV T FL AD+ E V+V
Sbjct:  122 QVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBU1_9PHAE1.280e-1168.63CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUT9_9PHAE1.240e-859.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE8.150e-853.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE3.880e-750.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1CA6F93.910e-748.15LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A6H5KJH6_9PHAE3.910e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE3.910e-750.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A401H6Z2_9APHY5.340e-749.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE5.340e-751.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWT4_9PHAE7.250e-751.85Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..54
e-value: 1.4E-10
score: 41.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54696contigH-elongata_contig54696:798..959 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54696.12862.1mRNA_H-elongata_contig54696.12862.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54696 798..959 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54696.12862.1 ID=prot_H-elongata_contig54696.12862.1|Name=mRNA_H-elongata_contig54696.12862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEE
EVYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2