mRNA_H-elongata_contig54690.12861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54690.12861.1
Unique NamemRNA_H-elongata_contig54690.12861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54690.12861.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.510e-9
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   40 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGYGDLILHFRSEGEVVHLKLCNVAYVPQLSHNLTSLRAVADSG 285
            WV D+GAS HF N+S+   +       +R A+G    IEG G + L   +   +V ++L NV+Y+P L +NL SL  V+  G
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQHG 378
[Close]
BLAST of mRNA_H-elongata_contig54690.12861.1 vs. uniprot
Match: A0A232EDH5_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EDH5_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-6
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   10 VLGGKVEDERWVCDTGASQHFSNDS--AHMLDFRECQKFMRTASGKRFPIEGYGDLILHF--RSEGEVVHLKLCNVAYVPQLSHNLTSLRAV 273
            ++  K+ D+ W+ D+GAS H  ND    H L  +   K +  A   R  ++G G+ IL     S   + HL+   V Y+PQL+ NL S +AV
Sbjct:   35 LMHAKIRDKDWILDSGASVHMCNDLNLLHKLS-KSSIKTVTAADHNRIAVQGEGEAILSSTQNSSDRIFHLR--RVLYIPQLTANLVSTKAV 123
[Close]
BLAST of mRNA_H-elongata_contig54690.12861.1 vs. uniprot
Match: A0A2K3MPN6_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MPN6_TRIPR)

HSP 1 Score: 50.8 bits (120), Expect = 3.410e-5
Identity = 29/88 (32.95%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:   13 LGGKVEDERWVCDTGASQHFSNDSAHMLDFR-ECQKFMRTASGKRFPIEGYGDLILHFRSEGEVVHLKLCNVAYVPQLSHNLTSLRAV 273
            +   V +  W+ D+GA+ H + DS H+L  +   +KF+ TA+G   P+ G G L L+         L L +V  VP L +NL S+  +
Sbjct:  355 ISSHVSNSAWIIDSGATDHMTFDSRHVLPLKPSSKKFVSTANGTSAPVIGKGSLPLNDT-------LNLDSVLVVPTLDYNLLSVSQI 435
[Close]
BLAST of mRNA_H-elongata_contig54690.12861.1 vs. uniprot
Match: UPI0005AC09DC (homeobox protein 9-like n=1 Tax=Fopius arisanus TaxID=64838 RepID=UPI0005AC09DC)

HSP 1 Score: 49.7 bits (117), Expect = 8.070e-5
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    4 FAVLGGK-VEDERWVCDTGASQHFSNDSAHMLDF-RECQKFMRTASGKRFPIEGYGDLILHFRSEGEVVHLKLCNVAYVPQLSHNLTSL 264
            FA+   K + +  W+ D+GAS H S +     +F R+    + TA       EG GD+ +   + G VVHL + +V YVP+ + NL S+
Sbjct:  265 FALCAAKNLSNVDWIIDSGASTHISPERNFFQNFKRKDLAVIVTADESILHAEGVGDIEIPVSTNGNVVHLLVKDVLYVPKAATNLLSI 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54690.12861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6G0X3B5_9STRA1.510e-937.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A232EDH5_9HYME1.350e-634.78Uncharacterized protein n=1 Tax=Trichomalopsis sar... [more]
A0A2K3MPN6_TRIPR3.410e-532.95Retrovirus-related Pol polyprotein from transposon... [more]
UPI0005AC09DC8.070e-533.71homeobox protein 9-like n=1 Tax=Fopius arisanus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54690contigH-elongata_contig54690:1872..2156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.6773634-CDS-H-elongata_contig54690:1871..21561622930891.6773634-CDS-H-elongata_contig54690:1871..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54690 1872..2156 -
1691679613.8955567-CDS-H-elongata_contig54690:1871..21561691679613.8955567-CDS-H-elongata_contig54690:1871..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54690 1872..2156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54690.12861.1prot_H-elongata_contig54690.12861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54690 1872..2156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54690.12861.1

>prot_H-elongata_contig54690.12861.1 ID=prot_H-elongata_contig54690.12861.1|Name=mRNA_H-elongata_contig54690.12861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
HFAVLGGKVEDERWVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFP
IEGYGDLILHFRSEGEVVHLKLCNVAYVPQLSHNLTSLRAVADSG
back to top

mRNA from alignment at H-elongata_contig54690:1872..2156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54690.12861.1 ID=mRNA_H-elongata_contig54690.12861.1|Name=mRNA_H-elongata_contig54690.12861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig54690:1872..2156- (Himanthalia elongata Himel1 dioecious)
CATTTTGCGGTTTTGGGTGGTAAGGTAGAGGACGAGCGTTGGGTGTGTGA
CACGGGCGCTTCGCAGCATTTTAGCAATGACTCTGCGCACATGCTCGATT
TCCGTGAATGCCAAAAGTTTATGCGGACGGCTAGTGGGAAGAGATTCCCG
ATCGAGGGTTACGGTGACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGT
GGTACATCTCAAGCTTTGTAATGTAGCGTATGTGCCACAACTTTCTCACA
ATCTGACATCACTCAGAGCAGTAGCCGACAGTGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54690:1872..2156-

>mRNA_H-elongata_contig54690.12861.1 ID=mRNA_H-elongata_contig54690.12861.1|Name=mRNA_H-elongata_contig54690.12861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig54690:1872..2156- (Himanthalia elongata Himel1 dioecious)
CATTTTGCGGTTTTGGGTGGTAAGGTAGAGGACGAGCGTTGGGTGTGTGA
CACGGGCGCTTCGCAGCATTTTAGCAATGACTCTGCGCACATGCTCGATT
TCCGTGAATGCCAAAAGTTTATGCGGACGGCTAGTGGGAAGAGATTCCCG
ATCGAGGGTTACGGTGACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGT
GGTACATCTCAAGCTTTGTAATGTAGCGTATGTGCCACAACTTTCTCACA
ATCTGACATCACTCAGAGCAGTAGCCGACAGTGGACATTTTGCGGTTTTG
GGTGGTAAGGTAGAGGACGAGCGTTGGGTGTGTGACACGGGCGCTTCGCA
GCATTTTAGCAATGACTCTGCGCACATGCTCGATTTCCGTGAATGCCAAA
AGTTTATGCGGACGGCTAGTGGGAAGAGATTCCCGATCGAGGGTTACGGT
GACCTTATCTTGCACTTTCGGTCTGAGGGAGAGGTGGTACATCTCAAGCT
TTGTAATGTAGCGTATGTGCCACAACTTTCTCACAATCTGACATCACTCA
GAGCAGTAGCCGACAGTGGA
back to top