mRNA_H-elongata_contig116332.1286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116332.1286.1
Unique NamemRNA_H-elongata_contig116332.1286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116332.1286.1 vs. uniprot
Match: D7FK92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK92_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.710e-23
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 GTIVSELKLPDFNPGTLNHCMRRRDMLRIDRENLALMHRIEGVTSAYKKTLLEPKYFQLPHVGLFPR 201
            GTIVSE   PDFNPGTLN+ +R+R+++RIDR+NLALMHR+E  +S Y K L++PKYF+ PH+GLFPR
Sbjct:   61 GTIVSEQTFPDFNPGTLNYRIRQRELVRIDRDNLALMHRLETASSGYNKALVKPKYFRQPHMGLFPR 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116332.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK92_ECTSI3.710e-2365.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116332contigH-elongata_contig116332:1162..1362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-17_003220.1
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.2005045-CDS-H-elongata_contig116332:1161..13621622929676.2005045-CDS-H-elongata_contig116332:1161..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116332 1162..1362 -
1691679115.4765792-CDS-H-elongata_contig116332:1161..13621691679115.4765792-CDS-H-elongata_contig116332:1161..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116332 1162..1362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116332.1286.1prot_H-elongata_contig116332.1286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116332 1162..1362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116332.1286.1

>prot_H-elongata_contig116332.1286.1 ID=prot_H-elongata_contig116332.1286.1|Name=mRNA_H-elongata_contig116332.1286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GTIVSELKLPDFNPGTLNHCMRRRDMLRIDRENLALMHRIEGVTSAYKKT
LLEPKYFQLPHVGLFPR
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mRNA from alignment at H-elongata_contig116332:1162..1362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116332.1286.1 ID=mRNA_H-elongata_contig116332.1286.1|Name=mRNA_H-elongata_contig116332.1286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig116332:1162..1362- (Himanthalia elongata Himel1 dioecious)
GGAACGATTGTGTCTGAGCTCAAGCTCCCGGATTTTAACCCTGGAACTCT
CAACCATTGCATGCGGCGGCGCGACATGCTGCGAATTGACCGGGAAAACT
TAGCCCTGATGCATCGTATCGAGGGCGTAACCTCTGCCTACAAGAAAACG
CTTTTAGAGCCGAAATATTTTCAGTTGCCGCACGTGGGACTCTTCCCAAG
G
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Coding sequence (CDS) from alignment at H-elongata_contig116332:1162..1362-

>mRNA_H-elongata_contig116332.1286.1 ID=mRNA_H-elongata_contig116332.1286.1|Name=mRNA_H-elongata_contig116332.1286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig116332:1162..1362- (Himanthalia elongata Himel1 dioecious)
GGAACGATTGTGTCTGAGCTCAAGCTCCCGGATTTTAACCCTGGAACTCT
CAACCATTGCATGCGGCGGCGCGACATGCTGCGAATTGACCGGGAAAACT
TAGCCCTGATGCATCGTATCGAGGGCGTAACCTCTGCCTACAAGAAAACG
CTTTTAGAGCCGAAATATTTTCAGTTGCCGCACGTGGGACTCTTCCCAAG
GGGAACGATTGTGTCTGAGCTCAAGCTCCCGGATTTTAACCCTGGAACTC
TCAACCATTGCATGCGGCGGCGCGACATGCTGCGAATTGACCGGGAAAAC
TTAGCCCTGATGCATCGTATCGAGGGCGTAACCTCTGCCTACAAGAAAAC
GCTTTTAGAGCCGAAATATTTTCAGTTGCCGCACGTGGGACTCTTCCCAA
GG
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