mRNA_H-elongata_contig54679.12858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54679.12858.1
Unique NamemRNA_H-elongata_contig54679.12858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: D7FTB4_ECTSI (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB4_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 9.470e-152
Identity = 217/247 (87.85%), Postives = 236/247 (95.55%), Query Frame = 1
Query:    1 MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            MQVCSCNNVDKGAIFRAVTEDGLT+V EVKS TKAGTGCGGCEPMVKDIFAFAM+SSGKEVSTD+CEHF YTRQELYDIV+A  ++SF+ELL++HGHGDGCE+CKPLVSSILASVNNDMIF+N+GMTLQDTNDRALANMQRGGSYSVIPRVP GEL PEQLI MG VAKKYNLYTK+TGGQRID+FGAEKH+LP+IW ELG++GLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAV +ENRYKG
Sbjct:  440 MQVCSCNNVDKGAIFRAVTEDGLTSVGEVKSCTKAGTGCGGCEPMVKDIFAFAMKSSGKEVSTDVCEHFHYTRQELYDIVRATGVKSFDELLDSHGHGDGCEVCKPLVSSILASVNNDMIFNNDGMTLQDTNDRALANMQRGGSYSVIPRVPGGELTPEQLICMGQVAKKYNLYTKVTGGQRIDMFGAEKHQLPSIWAELGEAGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVRLENRYKG 686          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A6H5L7C3_9PHAE (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C3_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 2.380e-150
Identity = 213/247 (86.23%), Postives = 234/247 (94.74%), Query Frame = 1
Query:    1 MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            MQVCSCNNVDKGAIFRAVTEDGLT+V EVK  TKAGTGCGGCEPMVKDIFAFAM+SSGKE+STD+CEHF YTRQELYDIV+A  ++SF+ELL++HGHGDGCE+CKPLVSSILASV+NDMIF+N GMTLQDTNDRALANMQRGGSYSVIPRVP GEL PEQLI MG VAKKYNLYTK+TGGQRID+FGAEKH+LP+IW ELG++GLESGHAYGKALRTVKSCVGSTWCRYGVQDAV+FAV +ENRYKG
Sbjct:  427 MQVCSCNNVDKGAIFRAVTEDGLTSVGEVKFCTKAGTGCGGCEPMVKDIFAFAMKSSGKELSTDVCEHFHYTRQELYDIVRATGVKSFDELLDSHGHGDGCEVCKPLVSSILASVHNDMIFNNGGMTLQDTNDRALANMQRGGSYSVIPRVPGGELTPEQLICMGQVAKKYNLYTKVTGGQRIDMFGAEKHQLPSIWAELGEAGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVTFAVRLENRYKG 673          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A2E3Z7Y8_9PLAN (Nitrite reductase (NAD(P)H) small subunit n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3Z7Y8_9PLAN)

HSP 1 Score: 355 bits (910), Expect = 1.890e-112
Identity = 166/246 (67.48%), Postives = 200/246 (81.30%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV K  I  A++E GLTT+A VKS TKAGTGCGGC P+V DIF   +  +G EV+  LCEHFAY+RQEL+ IVK   + +++ELL +HG+G+GCEICKP V+SILAS+ ND I +    TLQDTNDR LANMQRGG YSV+PRVP GE+ PE+LI +G+VAKKY LYTKITGGQRIDLFGA+ H+LP IWEEL  +G ESGHAYGKA+RTVKSCVG+TWCRYGVQD+V FA+ +E RY+G
Sbjct:  423 QICSCNNVSKDDISAAISEQGLTTLASVKSCTKAGTGCGGCMPLVTDIFKSELAKAGVEVNNHLCEHFAYSRQELFTIVKVKEVHTYDELLASHGNGNGCEICKPAVASILASLWNDTIMEPQHQTLQDTNDRFLANMQRGGLYSVVPRVPGGEITPEKLIALGEVAKKYALYTKITGGQRIDLFGAQLHQLPDIWEELINAGFESGHAYGKAVRTVKSCVGTTWCRYGVQDSVRFAIEVEKRYRG 668          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A5B9QI18_9BACT (Nitrite reductase [NAD(P)H] n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9QI18_9BACT)

HSP 1 Score: 354 bits (909), Expect = 2.460e-112
Identity = 165/246 (67.07%), Postives = 203/246 (82.52%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV KGAI  A+TE GLT++ ++KS TKAGTGCGGC P+V D+F   +E SG EV+ +LCEHFAY+RQEL+ IVK   I++F EL+ ++G G+GCEICKP V SILAS+ ND I + +  TLQDTNDR LANMQRGG YSV+PRVP GE+ P++LI +G+VAKKY LYTKITGGQRIDLFGA+ H+LP IWEEL  +G ESGHAYGKA+RTVKSCVG++WCRYGVQD+V FA+ +E RY+G
Sbjct:  423 QICSCNNVTKGAICAAITEGGLTSLTDLKSCTKAGTGCGGCMPLVADVFKAQLEKSGVEVNNNLCEHFAYSRQELFGIVKVKEIKTFAELITSYGSGNGCEICKPAVGSILASLWNDTIINADHQTLQDTNDRFLANMQRGGLYSVVPRVPGGEITPDKLIVIGNVAKKYGLYTKITGGQRIDLFGAQLHQLPDIWEELIDAGFESGHAYGKAVRTVKSCVGTSWCRYGVQDSVRFAIEVEKRYRG 668          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A354GZY4_9BACT (Nitrite reductase (NAD(P)H) small subunit (Fragment) n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GZY4_9BACT)

HSP 1 Score: 349 bits (895), Expect = 1.320e-111
Identity = 163/246 (66.26%), Postives = 202/246 (82.11%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV KG I  A+ E  L +V E+K  TKAG GCGGC P+V D+F  A+++SGK+V+  LCEHF+ TRQEL++IVK  RI+SF+E++ +HG G GCEICKP V+SILAS+ ND++ + +  T+QDTNDR LAN+QRGGSYSV+PRV  GE+ PE+L+ +G VA+KY LY+KITGGQRIDLFGA  H+LP IWEEL  +G ESGHAYGKALRTVKSCVG+TWCRYGVQDAVSFA+ +ENRYKG
Sbjct:  267 QICSCNNVSKGQICDAIREKNLCSVEEIKLCTKAGAGCGGCVPLVTDLFKAAVKASGKKVNNALCEHFSCTRQELFEIVKIKRIKSFDEVIGSHGRGQGCEICKPAVASILASLWNDLVVEQS--TIQDTNDRFLANLQRGGSYSVVPRVAGGEITPEKLVVLGQVARKYGLYSKITGGQRIDLFGAAAHQLPDIWEELVNAGFESGHAYGKALRTVKSCVGTTWCRYGVQDAVSFAIRVENRYKG 510          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A3A0DAU8_9BACT (Nitrite reductase (NAD(P)H) (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DAU8_9BACT)

HSP 1 Score: 346 bits (888), Expect = 4.910e-111
Identity = 162/246 (65.85%), Postives = 196/246 (79.67%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV KG +  A+ E  LTT+  VK+ TKAGTGCGGC P+V DI    + + GK V+ DLCEHFAYTRQ+L++IVK   +++F+ELL +HG G GCEICKP V+S+LAS+ N+ I D    TLQDTNDR LANMQRGG YS++PRVP GE+ P++L+ +G VAKKY LYTKITGGQRIDLFGA+  +LP IWEEL  +G ESGHAYGKALRTVKSCVGSTWCRYGVQD+V FA+ IE RY+G
Sbjct:  419 QICSCNNVTKGQLCAAIREQELTTIGAVKACTKAGTGCGGCVPLVTDILNKELAALGKSVNRDLCEHFAYTRQQLFEIVKIKELRTFDELLASHGRGHGCEICKPAVASMLASLWNEPITDRAHHTLQDTNDRFLANMQRGGLYSIVPRVPGGEITPDKLVVLGTVAKKYGLYTKITGGQRIDLFGAQVQQLPEIWEELVNAGFESGHAYGKALRTVKSCVGSTWCRYGVQDSVGFAIRIEERYRG 664          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A8J9TG59_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TG59_PHATR)

HSP 1 Score: 347 bits (891), Expect = 9.190e-111
Identity = 167/252 (66.27%), Postives = 198/252 (78.57%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGL--TTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKA----GRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCN+V +G I   + E G+   T++ VK  + AGTGCGGCEP VKDI    +   G  +S  LCEHF+Y+R EL  +V+       + SFE++L  HGHGDGCE+CKP V SILAS+NN +I D+    LQDTNDRA+ANMQRGGSYSV+PRVPAGELLP+QLI +G VAKKY+LYTK+TG QR+DLFGA KH+LP IWEELG++G ESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAV IENRYKG
Sbjct:  460 QICSCNDVTRGDIASTIVELGVEGATLSAVKKCSNAGTGCGGCEPQVKDILKQELAKLGGTLSNHLCEHFSYSRPELMALVRTDTDPSSVDSFEKVLHKHGHGDGCEVCKPTVGSILASLNNGIIIDDGRDALQDTNDRAMANMQRGGSYSVVPRVPAGELLPDQLIALGVVAKKYDLYTKVTGAQRVDLFGAAKHQLPDIWEELGQAGFESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVEIENRYKG 711          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A3ZZT4_9BACT (Nitrite reductase (NAD(P)H) large subunit n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZZT4_9BACT)

HSP 1 Score: 350 bits (897), Expect = 1.170e-110
Identity = 159/246 (64.63%), Postives = 199/246 (80.89%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV KG I  A+ ++G+  V ++K  TKAGTGCGGC P+V D+ A  ++++GK  +TDLCEHFA+TRQELY+IV+   I+SF +L+  HG G GCEICKP V+SILAS+ ND I +    TLQD+NDR LAN+QRGGSYSV+PRVP GE+ PE+LI +G+VAKKY LYTKITGGQR+DLFGA+ +ELP IWEEL  +G ESGHAYGK++RTVKSCVGSTWCRYG+ D+V FA+ IE RY+G
Sbjct:  424 QICSCNNVTKGRICEAIRDEGIDNVGDLKMCTKAGTGCGGCMPLVTDLLAAELKAAGKAANTDLCEHFAHTRQELYEIVQLKEIKSFNDLIAQHGRGHGCEICKPAVASILASLWNDQILEPEHQTLQDSNDRFLANIQRGGSYSVVPRVPGGEITPEKLIVLGEVAKKYKLYTKITGGQRVDLFGAQAYELPEIWEELVNAGFESGHAYGKSVRTVKSCVGSTWCRYGIGDSVGFAIAIEERYRG 669          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A2S8FWH4_9BACT (Nitrite reductase (NAD(P)H) small subunit n=3 Tax=Blastopirellula TaxID=265487 RepID=A0A2S8FWH4_9BACT)

HSP 1 Score: 349 bits (896), Expect = 1.650e-110
Identity = 160/246 (65.04%), Postives = 201/246 (81.71%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSCNNV KG I  A+ ++G+ TV  +K  TKAGTGCGGC P+V D+ A  +++ GK  +TDLCEHF++TRQELY+IV+  +I++F +L+ +HG G GCEICKP V+SILAS+ ND I +    TLQD+NDR LAN+QRGGSYSV+PRVP GE+ PE+LI +G+VAKKYNLYTKITGGQR+DLFGA+ +ELP IWEEL  +G ESGHAYGK++RTVKSCVGSTWCRYGV D+V FA+ IE RY+G
Sbjct:  424 QICSCNNVTKGRICEAIRDEGVDTVGGLKMCTKAGTGCGGCMPLVNDLLAAELKALGKSANTDLCEHFSHTRQELYEIVQLKQIKTFNDLIASHGRGHGCEICKPAVASILASLWNDQILEPQHQTLQDSNDRFLANIQRGGSYSVVPRVPGGEITPEKLIVLGEVAKKYNLYTKITGGQRVDLFGAQAYELPDIWEELVDAGFESGHAYGKSVRTVKSCVGSTWCRYGVGDSVGFAIRIEERYRG 669          
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: F4C4C2_SPHS2 (Nitrite reductase (NAD(P)H), large subunit n=2 Tax=Sphingobacteriaceae TaxID=84566 RepID=F4C4C2_SPHS2)

HSP 1 Score: 345 bits (885), Expect = 2.300e-110
Identity = 159/246 (64.63%), Postives = 197/246 (80.08%), Query Frame = 1
Query:    4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
            Q+CSC  + KG I  A+ +D LT +A +K  TKA TGCGGC P+V D+    +ES GK V   LCEHFAYTRQELYD++K   I+S+ ELL  +G GDGCE+CKP V+S+LAS+ N++I   +  T+QDTNDR LAN+Q+GGSYSV+PR+PAGE+ P++L+ +  VAKKYNLYTKITGGQRIDLFGA+ HELPAIWEEL  +G ESGHAYGK+LRT+KSCVGSTWCR+GVQD+V FA+ IENRYKG
Sbjct:  419 QICSCEGISKGNICEAIAKDELTDLAGIKKATKACTGCGGCTPLVADLLKSVLESQGKVVKKTLCEHFAYTRQELYDLIKIQNIKSYSELLGRYGEGDGCEVCKPAVASLLASIWNEVILKQS--TIQDTNDRFLANIQKGGSYSVVPRIPAGEITPDKLLVIAQVAKKYNLYTKITGGQRIDLFGAQLHELPAIWEELIAAGFESGHAYGKSLRTIKSCVGSTWCRFGVQDSVGFAIEIENRYKG 662          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTB4_ECTSI9.470e-15287.85Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A6H5L7C3_9PHAE2.380e-15086.23Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A2E3Z7Y8_9PLAN1.890e-11267.48Nitrite reductase (NAD(P)H) small subunit n=2 Tax=... [more]
A0A5B9QI18_9BACT2.460e-11267.07Nitrite reductase [NAD(P)H] n=1 Tax=Bythopirellula... [more]
A0A354GZY4_9BACT1.320e-11166.26Nitrite reductase (NAD(P)H) small subunit (Fragmen... [more]
A0A3A0DAU8_9BACT4.910e-11165.85Nitrite reductase (NAD(P)H) (Fragment) n=1 Tax=Pla... [more]
A0A8J9TG59_PHATR9.190e-11166.27Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A3ZZT4_9BACT1.170e-11064.63Nitrite reductase (NAD(P)H) large subunit n=1 Tax=... [more]
A0A2S8FWH4_9BACT1.650e-11065.04Nitrite reductase (NAD(P)H) small subunit n=3 Tax=... [more]
F4C4C2_SPHS22.300e-11064.63Nitrite reductase (NAD(P)H), large subunit n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54679contigH-elongata_contig54679:47..1851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.4
Seed ortholog evalue2.2e-126
Seed eggNOG ortholog2880.D7FTB4
KEGG rclassRC00176
KEGG koko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
GOsGO:0006807,GO:0008150,GO:0008152
EggNOG free text desc.monodehydroascorbate reductase (NADH) activity
EggNOG OGsCOG0446@1,KOG1336@2759
EC1.7.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size741
Cds size741
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54679.12858.1prot_H-elongata_contig54679.12858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54679 47..1851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.1784441-CDS-H-elongata_contig54679:46..1481622930891.1784441-CDS-H-elongata_contig54679:46..148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 47..148 +
1691679613.6262426-CDS-H-elongata_contig54679:46..1481691679613.6262426-CDS-H-elongata_contig54679:46..148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 47..148 +
1622930891.199546-CDS-H-elongata_contig54679:330..4711622930891.199546-CDS-H-elongata_contig54679:330..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 331..471 +
1691679613.643668-CDS-H-elongata_contig54679:330..4711691679613.643668-CDS-H-elongata_contig54679:330..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 331..471 +
1622930891.2204897-CDS-H-elongata_contig54679:630..8111622930891.2204897-CDS-H-elongata_contig54679:630..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 631..811 +
1691679613.6546557-CDS-H-elongata_contig54679:630..8111691679613.6546557-CDS-H-elongata_contig54679:630..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 631..811 +
1622930891.238945-CDS-H-elongata_contig54679:976..10501622930891.238945-CDS-H-elongata_contig54679:976..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 977..1050 +
1691679613.6646233-CDS-H-elongata_contig54679:976..10501691679613.6646233-CDS-H-elongata_contig54679:976..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 977..1050 +
1622930891.2574823-CDS-H-elongata_contig54679:1429..15071622930891.2574823-CDS-H-elongata_contig54679:1429..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 1430..1507 +
1691679613.678614-CDS-H-elongata_contig54679:1429..15071691679613.678614-CDS-H-elongata_contig54679:1429..1507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 1430..1507 +
1622930891.277859-CDS-H-elongata_contig54679:1686..18511622930891.277859-CDS-H-elongata_contig54679:1686..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 1687..1851 +
1691679613.6991565-CDS-H-elongata_contig54679:1686..18511691679613.6991565-CDS-H-elongata_contig54679:1686..1851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54679 1687..1851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54679.12858.1

>prot_H-elongata_contig54679.12858.1 ID=prot_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp
MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIF
AFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDG
CEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPR
VPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEEL
GKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG
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mRNA from alignment at H-elongata_contig54679:47..1851+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54679.12858.1 ID=mRNA_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1805bp|location=Sequence derived from alignment at H-elongata_contig54679:47..1851+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTATGCTCGTGCAACAACGTGGACAAGGGTGCCATTTTCCGCGC CGTGACGGAAGACGGCCTCACCACTGTTGCGGAGGTCAAGAGCGTCACTA AGGTGAATCGTGTTTGGTGACTATGTTCGCGCATCAGACATTACATATAC TGCCTGGCGCTACGATGCATGTGCTGCTTTGGTTATTGTACGGTGGTGAC CCTCTAAATCCTAACCCTAAAGACGAGAGAGATAGCTGCTTCAGCCGTAT TTGGCAACGTCCGCCTTTACTCATATATACCCAGGCCGGAACTGGTTGCG GTGGGTGTGAGCCGATGGTGAAGGATATCTTCGCTTTCGCTATGGAGAGC TCTGGCAAGGAGGTGTCCACCGACCTTTGCGAACACTTCGCCTACACTCG ACAGGAACTGTATGATATCGTCAAGGTAAGCTGTATAGGTGAAGAGGCTA TATGTGTAGTCTAGAGCTATTTCGTTGATTTTATCTGGTCAACGTACGCT TCCCCGGAGTCGTGTACCATGTATCAACTTTGTAGCGGTGAATGATGGTG TCCAACCTTGTCGTGGCCGATCTCGTCGTGGCAGGCCGGGCGTATTCAAT CATTCGAAGAACTCCTGGAGAACCATGGCCACGGAGATGGCTGCGAAATC TGCAAGCCCCTCGTATCCAGTATCCTGGCGTCTGTAAACAACGACATGAT CTTCGATAACAACGGCATGACCCTCCAGGACACCAATGACCGCGCCCTTG CCAACATGCAAAGAGGTACAGTAAGTTTTGATCGGCCTTCGCCCTTGGTG CCTCGCCCGCCGACGTCCCTCAAGCAGGGGATGAAGCTAGATCCATGCTT GCTTATGCCTCTGATGCGTGGTATTGATTGCTCTCAAATGTTGTAACGGG GTGCTGTAATATCTCCATCCGTCTTTGCAGGCGGCTCCTATTCCGTCATC CCGCGCGTGCCAGCAGGAGAGCTTTTGCCGGAGCAGCTCATCACTATGGG CGACGTGAGGGCAAATCGACCATGGTATCACCGTATAATCACCAAAAACC AAAAACCAAAAGCCAAAAACTTGTTGCCGATCTCTTCACCGCATTTCCTG CAGCACATCAATAGTTTCGAGAGTCACATTGTGGCAGTGAAAAAGTAATT TCCTTTCTATTCCGCGTTTAACCAGGATGGGTTCCTCGTTGCAAAGCGTT CGTCCCGTACCGTCCCGTCCCACGGTCGATGAACGCAACACCACCACCTT GGAAAAAAGCTTTTTTCCTTTGAAGCGCTCTTACCGCGAAAGATCTCGAG GGATAGAAATATGGAACATTCCCCCAAATGCAGCGCATTCCATACATTCC ACGTATTGCATACCTATATTCCACATGTTTCAGGTAGCCAAGAAGTACAA CCTATACACCAAGATCACGGGCGGACAGCGCATCGACCTTTTCGGCGCTG AGAAGCACGAGGTGGGGTACTGTATCACATAGAGTACCGCTCTGATTGAT TTTGAAGCTACTCGACGATTTTGTCTTTTATACCAGTACATATTACAGCT ACGGCTGCTTTGTTCAGTTCGACATATCGAGGCGAGTTTCACCTAGATCT CATCTCGCCCGGGTCCTGACATCGCTTGTAACCACTGCAGCTGCCTGCAA TCTGGGAGGAACTGGGCAAGTCCGGACTTGAGTCTGGTCACGCGTACGGT AAGGCGCTACGGACGGTGAAGAGCTGCGTGGGATCGACATGGTGCCGCTA TGGCGTACAGGACGCGGTCAGCTTTGCCGTGACGATCGAAAACCGCTACA AGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig54679:47..1851+

>mRNA_H-elongata_contig54679.12858.1 ID=mRNA_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig54679:47..1851+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTATGCTCGTGCAACAACGTGGACAAGGGTGCCATTTTCCGCGC
CGTGACGGAAGACGGCCTCACCACTGTTGCGGAGGTCAAGAGCGTCACTA
AGATGCAGGTATGCTCGTGCAACAACGTGGACAAGGGTGCCATTTTCCGC
GCCGTGACGGAAGACGGCCTCACCACTGTTGCGGAGGTCAAGAGCGTCAC
TAAGGCCGGAACTGGTTGCGGTGGGTGTGAGCCGATGGTGAAGGATATCT
TCGCTTTCGCTATGGAGAGCTCTGGCAAGGAGGTGTCCACCGACCTTTGC
GAACACTTCGCCTACACTCGACAGGAACTGTATGATATCGTCAAGGCCGG
AACTGGTTGCGGTGGGTGTGAGCCGATGGTGAAGGATATCTTCGCTTTCG
CTATGGAGAGCTCTGGCAAGGAGGTGTCCACCGACCTTTGCGAACACTTC
GCCTACACTCGACAGGAACTGTATGATATCGTCAAGGCCGGGCGTATTCA
ATCATTCGAAGAACTCCTGGAGAACCATGGCCACGGAGATGGCTGCGAAA
TCTGCAAGCCCCTCGTATCCAGTATCCTGGCGTCTGTAAACAACGACATG
ATCTTCGATAACAACGGCATGACCCTCCAGGACACCAATGACCGCGCCCT
TGCCAACATGCAAAGAGGCCGGGCGTATTCAATCATTCGAAGAACTCCTG
GAGAACCATGGCCACGGAGATGGCTGCGAAATCTGCAAGCCCCTCGTATC
CAGTATCCTGGCGTCTGTAAACAACGACATGATCTTCGATAACAACGGCA
TGACCCTCCAGGACACCAATGACCGCGCCCTTGCCAACATGCAAAGAGGC
GGCTCCTATTCCGTCATCCCGCGCGTGCCAGCAGGAGAGCTTTTGCCGGA
GCAGCTCATCACTATGGGCGACGCGGCTCCTATTCCGTCATCCCGCGCGT
GCCAGCAGGAGAGCTTTTGCCGGAGCAGCTCATCACTATGGGCGACGTAG
CCAAGAAGTACAACCTATACACCAAGATCACGGGCGGACAGCGCATCGAC
CTTTTCGGCGCTGAGAAGCACGAGGTAGCCAAGAAGTACAACCTATACAC
CAAGATCACGGGCGGACAGCGCATCGACCTTTTCGGCGCTGAGAAGCACG
AGCTGCCTGCAATCTGGGAGGAACTGGGCAAGTCCGGACTTGAGTCTGGT
CACGCGTACGGTAAGGCGCTACGGACGGTGAAGAGCTGCGTGGGATCGAC
ATGGTGCCGCTATGGCGTACAGGACGCGGTCAGCTTTGCCGTGACGATCG
AAAACCGCTACAAGGGTCTGCCTGCAATCTGGGAGGAACTGGGCAAGTCC
GGACTTGAGTCTGGTCACGCGTACGGTAAGGCGCTACGGACGGTGAAGAG
CTGCGTGGGATCGACATGGTGCCGCTATGGCGTACAGGACGCGGTCAGCT
TTGCCGTGACGATCGAAAACCGCTACAAGGGT
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