mRNA_H-elongata_contig54645.12853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54645.12853.1
Unique NamemRNA_H-elongata_contig54645.12853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.820e-39
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 222
            +FRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRL+SAGQKVGLIAARRTGRLRGIRTEKE
Sbjct:  188 KFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.290e-32
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 210
            ++RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.290e-32
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 222
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RL+SAGQKVGLIAARRTGRLRGI+   E
Sbjct:  188 KYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.650e-32
Identity = 55/63 (87.30%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 210
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRL+SAG+KVGLIAARRTGRLRGI+
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250
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BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.680e-31
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 210
            ++RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
[Close]
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: M4BJW7_HYAAE (Ribosomal_L2_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJW7_HYAAE)

HSP 1 Score: 113 bits (282), Expect = 8.590e-31
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 210
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R + AG+KVGLIAARRTGRLRGI+
Sbjct:   51 KYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPAGKKVGLIAARRTGRLRGIK 113
[Close]
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.970e-30
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR-TEKE 222
            ++RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct:  188 KYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255
[Close]
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 115 bits (288), Expect = 4.010e-30
Identity = 52/63 (82.54%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIR 210
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250
[Close]
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 113 bits (283), Expect = 2.250e-29
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 222
            ++RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R + AG+KVGL+AARRTGRLRGI+   E
Sbjct:  188 KYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254
[Close]
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Match: UPI001A454EC4 (Uncharacterized protein n=1 Tax=Belnapia mucosa TaxID=2804532 RepID=UPI001A454EC4)

HSP 1 Score: 107 bits (268), Expect = 2.870e-29
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   22 RFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSSAGQKVGLIAARRTGRLRGIRTEKE 222
            +++ KRN WP VRGVAMNPVEHPFGGGNHQHIG PST  R + AG+KVGLIAARRTGRLRG +T +E
Sbjct:    1 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRHAPAGRKVGLIAARRTGRLRGTKTVQE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54645.12853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI1.820e-3997.01Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7R9UAP5_9STRA3.290e-3285.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZD66_9STRA3.290e-3283.58Translation protein SH3-like domain-containing pro... [more]
A0A7S2V227_9STRA4.650e-3287.30Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S1U069_9STRA3.680e-3182.54Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
M4BJW7_HYAAE8.590e-3182.54Ribosomal_L2_C domain-containing protein n=1 Tax=H... [more]
A0A418F530_9STRA1.970e-3080.88Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
F0YEL9_AURAN4.010e-3082.54Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
I2CPH3_NANGC2.250e-2977.61Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
UPI001A454EC42.870e-2974.63Uncharacterized protein n=1 Tax=Belnapia mucosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54645contigH-elongata_contig54645:770..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.5658755-CDS-H-elongata_contig54645:769..9941622930890.5658755-CDS-H-elongata_contig54645:769..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54645 770..994 -
1691679613.4355738-CDS-H-elongata_contig54645:769..9941691679613.4355738-CDS-H-elongata_contig54645:769..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54645 770..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54645.12853.1prot_H-elongata_contig54645.12853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54645 770..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54645.12853.1

>prot_H-elongata_contig54645.12853.1 ID=prot_H-elongata_contig54645.12853.1|Name=mRNA_H-elongata_contig54645.12853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MFVAVIIRFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLSS
AGQKVGLIAARRTGRLRGIRTEKE*
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mRNA from alignment at H-elongata_contig54645:770..994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54645.12853.1 ID=mRNA_H-elongata_contig54645.12853.1|Name=mRNA_H-elongata_contig54645.12853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig54645:770..994- (Himanthalia elongata Himel1 dioecious)
ATGTTCGTGGCTGTCATCATCAGGTTCCGAGTGAAGCGCAATGAATGGCC
CCATGTGCGTGGTGTGGCTATGAACCCGGTGGAGCACCCCTTCGGTGGTG
GTAACCACCAGCACATCGGACACCCGTCCACGGCCAACCGTCTGTCGTCT
GCTGGTCAAAAGGTCGGCCTTATCGCGGCTCGCCGCACCGGGCGCCTCAG
GGGTATCCGCACGGAGAAAGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig54645:770..994-

>mRNA_H-elongata_contig54645.12853.1 ID=mRNA_H-elongata_contig54645.12853.1|Name=mRNA_H-elongata_contig54645.12853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig54645:770..994- (Himanthalia elongata Himel1 dioecious)
ATGTTCGTGGCTGTCATCATCAGGTTCCGAGTGAAGCGCAATGAATGGCC
CCATGTGCGTGGTGTGGCTATGAACCCGGTGGAGCACCCCTTCGGTGGTG
GTAACCACCAGCACATCGGACACCCGTCCACGGCCAACCGTCTGTCGTCT
GCTGGTCAAAAGGTCGGCCTTATCGCGGCTCGCCGCACCGGGCGCCTCAG
GGGTATCCGCACGGAGAAAGAGTAAATGTTCGTGGCTGTCATCATCAGGT
TCCGAGTGAAGCGCAATGAATGGCCCCATGTGCGTGGTGTGGCTATGAAC
CCGGTGGAGCACCCCTTCGGTGGTGGTAACCACCAGCACATCGGACACCC
GTCCACGGCCAACCGTCTGTCGTCTGCTGGTCAAAAGGTCGGCCTTATCG
CGGCTCGCCGCACCGGGCGCCTCAGGGGTATCCGCACGGAGAAAGAGTAA
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