mRNA_H-elongata_contig54602.12847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54602.12847.1
Unique NamemRNA_H-elongata_contig54602.12847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.190e-67
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVC+KCGLIAVANLRKMSFECRGCKGKS+VSQ+
Sbjct:  509 KVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQI 618
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 7.120e-65
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVC+KCGLIAVANLRKMSFECRGCKGKS+VSQ+
Sbjct: 1133 KVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQI 1242
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 211 bits (538), Expect = 2.200e-61
Identity = 98/110 (89.09%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +VFLGPTFYQRLKHLVDDKIHSRSRGPV  LTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLF NSDAYRVHVCN+CGLIA+ANLRK SFECRGC+ K+++SQV
Sbjct: 1047 KVFLGPTFYQRLKHLVDDKIHSRSRGPVAMLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFLNSDAYRVHVCNRCGLIAIANLRKQSFECRGCRNKTDISQV 1156
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A3R7BNG1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BNG1_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.020e-60
Identity = 89/110 (80.91%), Postives = 102/110 (92.73%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQP+EGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  207 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPLEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDLCGIIAIANLRKMTFECRTCRNKTQISQV 316
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A7S3Y3D8_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D8_HETAK)

HSP 1 Score: 196 bits (499), Expect = 6.980e-59
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +VFLGPTFYQRLKHLVDDKIH+RSRGPV  LTRQPMEGRA+DGGLRMGEMERDCL++HG ANFLRDR F NSDAYR HVCN CGL+A+ANLRKM FECRGC+ +++V+Q+
Sbjct:  326 KVFLGPTFYQRLKHLVDDKIHARSRGPVAMLTRQPMEGRAKDGGLRMGEMERDCLVAHGVANFLRDRFFANSDAYRAHVCNTCGLLAIANLRKMVFECRGCRNRTDVAQI 435
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A0A8YF22_ARUDO (DNA-directed RNA polymerase n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0A8YF22_ARUDO)

HSP 1 Score: 184 bits (466), Expect = 1.170e-57
Identity = 83/109 (76.15%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    4 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC KCGLIA+ANL+K SFECRGCK K+++ QV
Sbjct:   14 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQV 122
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A7C9ANR9_OPUST (DNA-directed RNA polymerase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ANR9_OPUST)

HSP 1 Score: 184 bits (467), Expect = 6.150e-57
Identity = 82/109 (75.23%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    4 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC +CGLIA+ANL+K SFECRGCK K+++ QV
Sbjct:   75 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 183
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A418ATP0_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A418ATP0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 8.150e-57
Identity = 89/110 (80.91%), Postives = 102/110 (92.73%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQP+EGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  598 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPLEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDLCGIIAIANLRKMTFECRTCRNKTQISQV 707
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A830DAR1_9LAMI (DNA-directed RNA polymerase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DAR1_9LAMI)

HSP 1 Score: 182 bits (461), Expect = 1.590e-56
Identity = 81/109 (74.31%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    4 VFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR+RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC KCGL+A+ANL+K SFECR CK K+++ QV
Sbjct:   39 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLMAIANLKKHSFECRSCKNKTDIVQV 147
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BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Match: A0A662XQG4_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.950e-56
Identity = 90/110 (81.82%), Postives = 102/110 (92.73%), Query Frame = 1 
Query:    1 QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRGCKGKSEVSQV 330
            Q+F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGRAR+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVC+ CG+IA+ANLRKM+FECR C+ K+++SQV
Sbjct:  804 QIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQV 913
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54602.12847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE6.190e-6794.55DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI7.120e-6594.55DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA2.200e-6189.09DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A3R7BNG1_9STRA5.020e-6080.91DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]
A0A7S3Y3D8_HETAK6.980e-5980.00DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A0A8YF22_ARUDO1.170e-5776.15DNA-directed RNA polymerase n=2 Tax=Mesangiosperma... [more]
A0A7C9ANR9_OPUST6.150e-5775.23DNA-directed RNA polymerase n=3 Tax=Opuntia strept... [more]
A0A418ATP0_9STRA8.150e-5780.91DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]
A0A830DAR1_9LAMI1.590e-5674.31DNA-directed RNA polymerase n=1 Tax=Phtheirospermu... [more]
A0A662XQG4_9STRA1.950e-5681.82DNA-directed RNA polymerase subunit beta n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54602contigH-elongata_contig54602:303..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.2
Seed ortholog evalue1.2e-55
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.7393928-CDS-H-elongata_contig54602:302..6321622930889.7393928-CDS-H-elongata_contig54602:302..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54602 303..632 +
1691679613.139094-CDS-H-elongata_contig54602:302..6321691679613.139094-CDS-H-elongata_contig54602:302..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54602 303..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54602.12847.1prot_H-elongata_contig54602.12847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54602 303..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54602.12847.1

>prot_H-elongata_contig54602.12847.1 ID=prot_H-elongata_contig54602.12847.1|Name=mRNA_H-elongata_contig54602.12847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
QVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRARDGGLRMGEM
ERDCLISHGCANFLRDRLFTNSDAYRVHVCNKCGLIAVANLRKMSFECRG
CKGKSEVSQV
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mRNA from alignment at H-elongata_contig54602:303..632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54602.12847.1 ID=mRNA_H-elongata_contig54602.12847.1|Name=mRNA_H-elongata_contig54602.12847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig54602:303..632+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCTTGGGTCCGACGTTCTACCAACGCTTGAAGCACTTGGTGGA
CGACAAGATCCACAGCCGTAGTAGGGGCCCCGTAATGAACCTGACCCGGC
AGCCGATGGAGGGACGAGCTAGAGACGGCGGACTGCGCATGGGAGAGATG
GAGCGAGACTGCCTCATCAGCCACGGGTGCGCGAACTTCCTCCGCGACCG
CCTGTTCACCAACTCGGACGCGTACCGCGTGCACGTGTGCAACAAGTGCG
GACTGATCGCCGTGGCCAACCTTCGAAAGATGAGCTTCGAGTGCCGGGGC
TGCAAGGGCAAGTCTGAGGTGTCACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig54602:303..632+

>mRNA_H-elongata_contig54602.12847.1 ID=mRNA_H-elongata_contig54602.12847.1|Name=mRNA_H-elongata_contig54602.12847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig54602:303..632+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCTTGGGTCCGACGTTCTACCAACGCTTGAAGCACTTGGTGGA
CGACAAGATCCACAGCCGTAGTAGGGGCCCCGTAATGAACCTGACCCGGC
AGCCGATGGAGGGACGAGCTAGAGACGGCGGACTGCGCATGGGAGAGATG
GAGCGAGACTGCCTCATCAGCCACGGGTGCGCGAACTTCCTCCGCGACCG
CCTGTTCACCAACTCGGACGCGTACCGCGTGCACGTGTGCAACAAGTGCG
GACTGATCGCCGTGGCCAACCTTCGAAAGATGAGCTTCGAGTGCCGGGGC
TGCAAGGGCAAGTCTGAGGTGTCACAGGTGCAGGTGTTCTTGGGTCCGAC
GTTCTACCAACGCTTGAAGCACTTGGTGGACGACAAGATCCACAGCCGTA
GTAGGGGCCCCGTAATGAACCTGACCCGGCAGCCGATGGAGGGACGAGCT
AGAGACGGCGGACTGCGCATGGGAGAGATGGAGCGAGACTGCCTCATCAG
CCACGGGTGCGCGAACTTCCTCCGCGACCGCCTGTTCACCAACTCGGACG
CGTACCGCGTGCACGTGTGCAACAAGTGCGGACTGATCGCCGTGGCCAAC
CTTCGAAAGATGAGCTTCGAGTGCCGGGGCTGCAAGGGCAAGTCTGAGGT
GTCACAGGTG
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