mRNA_H-elongata_contig546.12845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig546.12845.1
Unique NamemRNA_H-elongata_contig546.12845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig546.12845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig546contigH-elongata_contig546:2403..2784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002630.1
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.4889874-CDS-H-elongata_contig546:2402..27201622930889.4889874-CDS-H-elongata_contig546:2402..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig546 2403..2720 +
1691679613.0547447-CDS-H-elongata_contig546:2402..27201691679613.0547447-CDS-H-elongata_contig546:2402..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig546 2403..2720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.5115798-UTR-H-elongata_contig546:2720..27841622930889.5115798-UTR-H-elongata_contig546:2720..2784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig546 2721..2784 +
1691679613.069289-UTR-H-elongata_contig546:2720..27841691679613.069289-UTR-H-elongata_contig546:2720..2784Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig546 2721..2784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig546.12845.1prot_H-elongata_contig546.12845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig546 2403..2720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig546.12845.1

>prot_H-elongata_contig546.12845.1 ID=prot_H-elongata_contig546.12845.1|Name=mRNA_H-elongata_contig546.12845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
CSHDDLHRGSCAAAHGVACVPEGQPPRPYIPFLNLPALGGKSDRIRRQKR
QIKTSSKKDPYANGGNPASTLPLRLDISGRYRRRERPPLPGETCRRIDGI
AISPG*
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mRNA from alignment at H-elongata_contig546:2403..2784+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig546.12845.1 ID=mRNA_H-elongata_contig546.12845.1|Name=mRNA_H-elongata_contig546.12845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=382bp|location=Sequence derived from alignment at H-elongata_contig546:2403..2784+ (Himanthalia elongata Himel1 dioecious)
TGTAGTCACGACGATCTTCATCGAGGCTCCTGCGCAGCAGCCCATGGTGT
TGCCTGTGTTCCGGAGGGGCAACCGCCACGTCCCTACATTCCGTTCCTGA
ACCTCCCCGCGCTAGGTGGTAAGAGCGATCGCATCCGACGGCAAAAGCGA
CAAATAAAAACTTCAAGCAAAAAAGATCCGTACGCCAATGGTGGCAATCC
GGCGTCCACGCTTCCACTCAGGTTGGATATATCGGGGCGATATCGACGAC
GTGAACGACCACCGCTGCCTGGTGAGACCTGCAGAAGGATCGATGGCATC
GCGATTTCGCCCGGTTGAACCGCGCTATTCGGGTCTGAGATACCTCGCAT
ATTTGAGACGGGAGCATTATGATAATCTTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig546:2403..2784+

>mRNA_H-elongata_contig546.12845.1 ID=mRNA_H-elongata_contig546.12845.1|Name=mRNA_H-elongata_contig546.12845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig546:2403..2784+ (Himanthalia elongata Himel1 dioecious)
TGTAGTCACGACGATCTTCATCGAGGCTCCTGCGCAGCAGCCCATGGTGT
TGCCTGTGTTCCGGAGGGGCAACCGCCACGTCCCTACATTCCGTTCCTGA
ACCTCCCCGCGCTAGGTGGTAAGAGCGATCGCATCCGACGGCAAAAGCGA
CAAATAAAAACTTCAAGCAAAAAAGATCCGTACGCCAATGGTGGCAATCC
GGCGTCCACGCTTCCACTCAGGTTGGATATATCGGGGCGATATCGACGAC
GTGAACGACCACCGCTGCCTGGTGAGACCTGCAGAAGGATCGATGGCATC
GCGATTTCGCCCGGTTGATGTAGTCACGACGATCTTCATCGAGGCTCCTG
CGCAGCAGCCCATGGTGTTGCCTGTGTTCCGGAGGGGCAACCGCCACGTC
CCTACATTCCGTTCCTGAACCTCCCCGCGCTAGGTGGTAAGAGCGATCGC
ATCCGACGGCAAAAGCGACAAATAAAAACTTCAAGCAAAAAAGATCCGTA
CGCCAATGGTGGCAATCCGGCGTCCACGCTTCCACTCAGGTTGGATATAT
CGGGGCGATATCGACGACGTGAACGACCACCGCTGCCTGGTGAGACCTGC
AGAAGGATCGATGGCATCGCGATTTCGCCCGGTTGA
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