mRNA_H-elongata_contig116299.1284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116299.1284.1
Unique NamemRNA_H-elongata_contig116299.1284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: D7FTX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX6_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.590e-26
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   10 RFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDDR 201
            RFET +NH VELGASWL+L PVRA+ +  GGIQ  FQLAII+SGNLSFLNYLTILPFIWCFDDR
Sbjct:  248 RFETAMNHIVELGASWLLLAPVRALSLLAGGIQTGFQLAIIISGNLSFLNYLTILPFIWCFDDR 311          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: UPI0014258091 (lipase maturation factor 1-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258091)

HSP 1 Score: 89.0 bits (219), Expect = 4.360e-19
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   10 RFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDDR 201
            +FET  NH +ELGA WL+++P R   M GG IQ LFQ+ +I+SGNLSFLN+LTILP I CFDD+
Sbjct:  269 QFETASNHFIELGAPWLLIIPWRPTLMIGGTIQVLFQVVLILSGNLSFLNWLTILPSICCFDDK 332          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A8J1XFI2_OWEFU (Lipase maturation factor n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XFI2_OWEFU)

HSP 1 Score: 86.3 bits (212), Expect = 3.860e-18
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 VLGRFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDDR 201
            +  RFET+ NH VEL A W +L+P R + +AGG IQ LFQ+ II+SGNLSFLN+LTILP I CFDD+
Sbjct:  264 IFHRFETLTNHFVELIAPWFILLPFRRLRIAGGVIQILFQVLIIISGNLSFLNWLTILPAIACFDDK 330          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A8B8EBQ5_CRAVI (Lipase maturation factor n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EBQ5_CRAVI)

HSP 1 Score: 82.4 bits (202), Expect = 8.730e-17
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 VLGRFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            +  +FET+ NH VEL A W +L P R +CM GG IQ LFQ+ +I+SGNLSFLN+LTI+P + CFDD
Sbjct:  257 IFHKFETLTNHFVELVAPWFLLGP-RRLCMIGGAIQILFQVVLIISGNLSFLNWLTIVPSLACFDD 321          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A7J7K8K0_BUGNE (Lipase maturation factor n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K8K0_BUGNE)

HSP 1 Score: 75.9 bits (185), Expect = 1.790e-16
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 ETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDDR 201
            ET  NH VEL A  ++++P+R V + GG IQ LFQ+ +I SGNLSFLN+LTILP I CFDD+
Sbjct:    2 ETAGNHFVELIAPLMLIIPLRKVQIVGGSIQILFQVILICSGNLSFLNWLTILPCIACFDDK 63          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A0G4GCT9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GCT9_VITBC)

HSP 1 Score: 81.3 bits (199), Expect = 2.250e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   13 FETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            FET+VNH +E   SW  L+P+R   +  GG Q +FQ+ +I+SGNLSFLN+LTILP I+CFDD
Sbjct:  261 FETLVNHIIECALSWNTLIPLRGCRLIAGGSQVIFQVVLILSGNLSFLNWLTILPSIFCFDD 322          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A7S2H477_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2H477_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 5.090e-16
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   19 TVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            T  NH +EL A WL+L+P R    A G +  +FQ+A+I++GNLSFLN+LTI+P +WCFDD
Sbjct:   17 TACNHVIELFAPWLVLLPWRPALAAFGALHIVFQVALILTGNLSFLNWLTIVPGLWCFDD 76          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A812MV54_9DINO (Lmf1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812MV54_9DINO)

HSP 1 Score: 80.1 bits (196), Expect = 5.730e-16
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    4 LGRFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            L  + T  NH +EL   WL+L P RA   A G +  LFQLA+I++GNLSFLN+LTI+P +WCFDD
Sbjct:  375 LHLYATASNHVIELVMPWLLLCPCRATLAAFGAVHILFQLALILTGNLSFLNWLTIIPGLWCFDD 439          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A7S0LZW9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZW9_9CRYP)

HSP 1 Score: 76.3 bits (186), Expect = 7.850e-16
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   13 FETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            F T+VNH VEL A +L+L+P R   + GG IQ LFQ  +I+SGNLSFLN+LTI P I CFDD
Sbjct:   66 FSTLVNHLVELPAPFLLLLPFRRPRIVGGVIQVLFQAVLILSGNLSFLNWLTIAPAIACFDD 127          
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Match: A0A812W742_SYMPI (LMF1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812W742_SYMPI)

HSP 1 Score: 79.3 bits (194), Expect = 1.060e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    4 LGRFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLSFLNYLTILPFIWCFDD 198
            L  + T  NH +EL   WL+LVP RA   A G +  LFQL +I++GNLSFLN+LTI+P +WCFDD
Sbjct:  271 LHLYATASNHIIELVMPWLLLVPCRAAPAAFGAVHILFQLTLILTGNLSFLNWLTIIPGLWCFDD 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116299.1284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTX6_ECTSI1.590e-2679.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00142580914.360e-1962.50lipase maturation factor 1-like isoform X1 n=2 Tax... [more]
A0A8J1XFI2_OWEFU3.860e-1862.69Lipase maturation factor n=1 Tax=Owenia fusiformis... [more]
A0A8B8EBQ5_CRAVI8.730e-1759.09Lipase maturation factor n=1 Tax=Crassostrea virgi... [more]
A0A7J7K8K0_BUGNE1.790e-1659.68Lipase maturation factor n=1 Tax=Bugula neritina T... [more]
A0A0G4GCT9_VITBC2.250e-1658.06Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2H477_9DINO5.090e-1655.00Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812MV54_9DINO5.730e-1655.38Lmf1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S0LZW9_9CRYP7.850e-1661.29Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A812W742_SYMPI1.060e-1555.38LMF1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116299contigH-elongata_contig116299:141..344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog2880.D7FTX6
EggNOG free text desc.protein glycosylation in Golgi
EggNOG OGs28KNS@1,2QT4H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.9503427-CDS-H-elongata_contig116299:140..3441622929675.9503427-CDS-H-elongata_contig116299:140..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116299 141..344 -
1691679115.4381716-CDS-H-elongata_contig116299:140..3441691679115.4381716-CDS-H-elongata_contig116299:140..344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116299 141..344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116299.1284.1prot_H-elongata_contig116299.1284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116299 141..344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116299.1284.1

>prot_H-elongata_contig116299.1284.1 ID=prot_H-elongata_contig116299.1284.1|Name=mRNA_H-elongata_contig116299.1284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
VLGRFETVVNHAVELGASWLMLVPVRAVCMAGGGIQALFQLAIIMSGNLS
FLNYLTILPFIWCFDDR*
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mRNA from alignment at H-elongata_contig116299:141..344-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116299.1284.1 ID=mRNA_H-elongata_contig116299.1284.1|Name=mRNA_H-elongata_contig116299.1284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig116299:141..344- (Himanthalia elongata Himel1 dioecious)
GTGCTCGGCAGGTTCGAGACCGTCGTCAACCATGCGGTAGAGCTGGGCGC TTCGTGGCTGATGCTCGTGCCGGTCCGTGCAGTGTGCATGGCCGGAGGCG GGATTCAAGCCCTGTTCCAACTCGCGATCATCATGTCGGGCAACCTCTCC TTCCTGAACTATCTGACAATCCTCCCCTTCATATGGTGCTTCGATGACAG GTAG
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Coding sequence (CDS) from alignment at H-elongata_contig116299:141..344-

>mRNA_H-elongata_contig116299.1284.1 ID=mRNA_H-elongata_contig116299.1284.1|Name=mRNA_H-elongata_contig116299.1284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig116299:141..344- (Himanthalia elongata Himel1 dioecious)
GTGCTCGGCAGGTTCGAGACCGTCGTCAACCATGCGGTAGAGCTGGGCGC
TTCGTGGCTGATGCTCGTGCCGGTCCGTGCAGTGTGCATGGCCGGAGGCG
GGATTCAAGCCCTGTTCCAACTCGCGATCATCATGTCGGGCAACCTCTCC
TTCCTGAACTATCTGACAATCCTCCCCTTCATATGGTGCTTCGATGACAG
GTAGGTGCTCGGCAGGTTCGAGACCGTCGTCAACCATGCGGTAGAGCTGG
GCGCTTCGTGGCTGATGCTCGTGCCGGTCCGTGCAGTGTGCATGGCCGGA
GGCGGGATTCAAGCCCTGTTCCAACTCGCGATCATCATGTCGGGCAACCT
CTCCTTCCTGAACTATCTGACAATCCTCCCCTTCATATGGTGCTTCGATG
ACAGGTAG
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