mRNA_H-elongata_contig54552.12840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54552.12840.1
Unique NamemRNA_H-elongata_contig54552.12840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54552.12840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54552contigH-elongata_contig54552:2638..3480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54552.12840.1prot_H-elongata_contig54552.12840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54552 2688..3454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.6223319-UTR-H-elongata_contig54552:2637..26871622930888.6223319-UTR-H-elongata_contig54552:2637..2687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54552 2638..2687 +
1691679612.6136794-UTR-H-elongata_contig54552:2637..26871691679612.6136794-UTR-H-elongata_contig54552:2637..2687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54552 2638..2687 +
1622930888.7162735-UTR-H-elongata_contig54552:3454..34801622930888.7162735-UTR-H-elongata_contig54552:3454..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54552 3455..3480 +
1691679612.6464953-UTR-H-elongata_contig54552:3454..34801691679612.6464953-UTR-H-elongata_contig54552:3454..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54552 3455..3480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.676884-CDS-H-elongata_contig54552:2687..28571622930888.676884-CDS-H-elongata_contig54552:2687..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54552 2688..2857 +
1691679612.6247663-CDS-H-elongata_contig54552:2687..28571691679612.6247663-CDS-H-elongata_contig54552:2687..2857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54552 2688..2857 +
1622930888.6952438-CDS-H-elongata_contig54552:3315..34541622930888.6952438-CDS-H-elongata_contig54552:3315..3454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54552 3316..3454 +
1691679612.6357942-CDS-H-elongata_contig54552:3315..34541691679612.6357942-CDS-H-elongata_contig54552:3315..3454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54552 3316..3454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54552.12840.1

>prot_H-elongata_contig54552.12840.1 ID=prot_H-elongata_contig54552.12840.1|Name=mRNA_H-elongata_contig54552.12840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MCLSMLGCAKTAASPRRSTKDESEPAFPKQNVGSPPSREKRRGVGGDLGF
PRQNRQRLTFKTLHPSTVIMGSGRGRLESISTRRRCFSPVCQPMSPQSRG
EK*
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mRNA from alignment at H-elongata_contig54552:2638..3480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54552.12840.1 ID=mRNA_H-elongata_contig54552.12840.1|Name=mRNA_H-elongata_contig54552.12840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig54552:2638..3480+ (Himanthalia elongata Himel1 dioecious)
CCCCCAACCCCGCCCCATTTTAACGGCCGCCTTTGTTCCCCCGCTCGAGA
ATGTGTCTCAGCATGCTCGGGTGCGCGAAGACGGCAGCCTCACCACGGCG
CTCGACAAAGGACGAAAGCGAGCCTGCTTTCCCGAAACAAAACGTTGGCT
CGCCACCGTCGCGAGAAAAACGACGCGGGGTCGGCGGAGATCTGGGGTTT
CCAAGACAAAACAGACAGAGGTAGGAGGGGAGAGGGCGTGGTGGTGTTTC
CAGTGCGTTGGTCCCCGAAATAGTCGAGGAGCGCGAGGGCAAGGGACAAA
TGCGATTGCGGCTGGGATGAGTGTGAAGACCGCATCTACGTAGATCTATT
GTAGGGACAGAATCTCTGCTATATTACGAGTAGATAAAAAAAGTACATAA
AAGTGATAGGAAAATGCCTGAATAGAAGAATGCCTGAACCATGAAAAATG
AAAGATTGTGATAAGAGACAGCCAAACAAAGGTGGTCGTAAACACTGAGA
GATCGGTCAGTTATAAAAAAGTTGGCCAGAGAAGGCCGAAATTGATGTCG
ACTGGATAAGATCAGCGATCGATCATGCAGGGACAACGCTCCGTCCTCCC
GAGGGTTGGATGGTCTAGCCGCCAAGGCGTGCAAAACTTAAGAACGCCCC
CCCCCCACCCCATATTACCTTTCCTCAGACTTACCTTTAAAACGCTCCAT
CCTTCAACCGTCATAATGGGCAGCGGCCGGGGCAGGCTAGAGAGCATCTC
CACCCGGAGGCGGTGCTTCTCTCCCGTATGCCAGCCTATGTCGCCCCAAT
CCCGTGGCGAGAAATGAGGGTGTACTTGGCTGGCATGTCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig54552:2638..3480+

>mRNA_H-elongata_contig54552.12840.1 ID=mRNA_H-elongata_contig54552.12840.1|Name=mRNA_H-elongata_contig54552.12840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig54552:2638..3480+ (Himanthalia elongata Himel1 dioecious)
ATGTGTCTCAGCATGCTCGGGTGCGCGAAGACGGCAGCCTCACCACGGCG
CTCGACAAAGGACGAAAGCGAGCCTGCTTTCCCGAAACAAAACGTTGGCT
CGCCACCGTCGCGAGAAAAACGACGCGGGGTCGGCGGAGATCTGGGGTTT
CCAAGACAAAACAGACAGAGATGTGTCTCAGCATGCTCGGGTGCGCGAAG
ACGGCAGCCTCACCACGGCGCTCGACAAAGGACGAAAGCGAGCCTGCTTT
CCCGAAACAAAACGTTGGCTCGCCACCGTCGCGAGAAAAACGACGCGGGG
TCGGCGGAGATCTGGGGTTTCCAAGACAAAACAGACAGAGACTTACCTTT
AAAACGCTCCATCCTTCAACCGTCATAATGGGCAGCGGCCGGGGCAGGCT
AGAGAGCATCTCCACCCGGAGGCGGTGCTTCTCTCCCGTATGCCAGCCTA
TGTCGCCCCAATCCCGTGGCGAGAAATGAACTTACCTTTAAAACGCTCCA
TCCTTCAACCGTCATAATGGGCAGCGGCCGGGGCAGGCTAGAGAGCATCT
CCACCCGGAGGCGGTGCTTCTCTCCCGTATGCCAGCCTATGTCGCCCCAA
TCCCGTGGCGAGAAATGA
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