mRNA_H-elongata_contig54534.12837.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 6.500e-22 Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 2
Query: 71 QRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
+RD AGRMMT SR + D KYV+M FLHGN+DL+ E I ELPADGV+G Q+KIPGR SNP+ L L G FGPV
Sbjct: 681 ERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPV 756
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 4.150e-19 Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTD-VKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
L+RDFS+AGRMMT SRR+ D YV+M FLHGNLDLI EDI +L + V A+SKIPGR +NP+ L+ L GAF PV
Sbjct: 26 LERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPV 100
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 4.820e-18 Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 2
Query: 44 GQLVWCSELQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
G L + L+ DFS+AGRMMT SR + D KYV+M FLHGNLDLI EDI +L + V A++KIPGR +NP+ L+ L GAF PV
Sbjct: 403 GALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPV 484
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.540e-17 Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
L+RDFS+AGRMMT SR + D KYV+M FLHGNLDLI EDI +L A++KIPGR +NP+ L+ L G F PV
Sbjct: 638 LERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPV 711
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.230e-16 Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
L+RDF+DA MM SR + D KYV+M FLHGNLDLI E I EL + V Q+KIPGR SNP+P L GL G G V
Sbjct: 578 LERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLV 651
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.430e-16 Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTDVKY-VDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
L+RDFS+AGRMMT SR + D KY V+M FLHGNLDLI EDI L + V A++ PGR +NP+ L+ L GAF PV
Sbjct: 26 LERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPV 100
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 3.770e-13 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2
Query: 134 YVDMSFFLHGNLDLISEDIAELPADGVDGAQSK-IPGRFSNPLP*LQGLAGAFGPV 298
YV+M FLHGNLDLI +DI LP DG D A +K +PGR NP P L+ ++GAFGPV
Sbjct: 67 YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPV 122
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 9.250e-13 Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
L+ FS+AGRM T SR + D YV+M FLHGNL+LI EDI +L + V A++K PGR +NP+ L+ L GAF PV
Sbjct: 174 LECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRLANPVDGLEPLDGAFAPV 247
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 7.200e-10 Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 2
Query: 68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDI 190
L+ DF DAGR+MT SR +TD KYV+M FLHGNLDLI EDI
Sbjct: 68 LEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54534.12837.1 >prot_H-elongata_contig54534.12837.1 ID=prot_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MWWKRWESSYPLLARAARVVFGAPARFQRCWAHDDVIEKIHRCQVRGHELback to top mRNA from alignment at H-elongata_contig54534:2096..2395+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54534.12837.1 ID=mRNA_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig54534:2096..2395+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54534:2096..2395+ >mRNA_H-elongata_contig54534.12837.1 ID=mRNA_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig54534:2096..2395+ (Himanthalia elongata Himel1 dioecious)back to top |