mRNA_H-elongata_contig54532.12836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54532.12836.1
Unique NamemRNA_H-elongata_contig54532.12836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A6H5KVE2_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVE2_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 2.940e-105
Identity = 200/415 (48.19%), Postives = 249/415 (60.00%), Query Frame = 1
Query:    7 TAATADEFDITEFDGLTRSELQAMCKRLQLRAVGKTCELVSRLREHQRKRKQQHEERDQLL--EKVTTHTHHTKDPP--SPSSEELIVDVVSE-------EHYSPGSSFALDLPGTSAIAVQPQLSYSAVGPDRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGV---------------------------------NVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEERRKAATNIVADGPSDRGYSSVFHFTSEAIWNRAP 1119
            TAAT  ++   + + L+RSELQ +CK+L LRAVGKT EL+SR+ E        H  R++ L  +  TT +  +  P   +P  E  + +++S         +YS GS      P             +    +  R  F EL+DEQWA V +LG+LL EWNG+MNLISR+DI NVM RHVVPCLAMAKA+  +DG                                  +VLDVGTGGGLPGLP+AI +P V+FTLIDG GKKI AV DMA+RLGL NVR FH RAE+V+E FDF++GRAV +LPKFVGF+DKNLK N  R    T N  D          S+  LKRG+LYMRGE+ +EEL ELGARPSTV+ L+ VLEE  +     +  G  DRGYSS+FHFTSEAIWNR P
Sbjct:   88 TAATQQQYTAQDLEALSRSELQGLCKKLNLRAVGKTSELLSRVLESD-----DHARREKALGTKPATTESTASSSPKDEAPMGESTMAELLSSVDDGGNNTNYSSGSQEKAT-PXXXXXXXXXAAPSTDFFLEDIRPVFDELSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDGTYGEMRGAGEDPSRTLPPDPQPPPRREYLPSLSWSVLDVGTGGGLPGLPLAICFPMVKFTLIDGRGKKIKAVADMADRLGLRNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNDGR----TSNPADSSS-----SSSNNSLKRGILYMRGEVSEEELAELGARPSTVIPLQRVLEEAGQDGDVGLGGGADDRGYSSIFHFTSEAIWNRVP 487          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A7S2V0Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.280e-54
Identity = 100/221 (45.25%), Postives = 141/221 (63.80%), Query Frame = 1
Query:  391 PELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPP---LKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEERRKAATNIV 1044
            P+L+++QWA +E+LG+LL EWN ++NLISR+DI+NVM RH++PCLAMA +I +  G  V+DVGTGGGLPGLP+AI  PQ +F L+D  GKKI AV DMAERLGL +V+A HTR ED++E  D I+GR+V +LP+F+ +  KNL                   VH       PP     RG+ Y++G   ++EL  +  +P   ++L  V      +  N++
Sbjct:   60 PKLSNDQWAQLEKLGDLLTEWNEKVNLISRKDIDNVMVRHILPCLAMAASIDIDPGWTVMDVGTGGGLPGLPLAICNPQTQFLLVDARGKKIEAVADMAERLGLAHVKALHTRVEDINEPCDLILGRSVTALPRFMMWTRKNL-------------------VH-----PGPPGSTKMRGIAYIKGGNFEDELGGIDLKPEKAIALNTVFSSLADSDKNVL 256          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A355SZU0_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Opitutae TaxID=414999 RepID=A0A355SZU0_9BACT)

HSP 1 Score: 178 bits (452), Expect = 8.710e-51
Identity = 92/211 (43.60%), Postives = 134/211 (63.51%), Query Frame = 1
Query:  370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
            ++ ++ FP +A+E W ++++  +LL EWN ++NLISR+DIE++  RH+  CLA+   +KL +G  ++DVGTGGG PG+ MAI YPQ +FTLID  GKKI  V D+  +LGL NV A  TRAE+V + FDF+ GRAV +LP+F  ++  N++R                      EK++ P   GVLY +G    +EL+ LG RP  V++LE
Sbjct:    4 EQLKQQFPNIAEETWPVLQKWSQLLREWNEKINLISRKDIEHLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKITVVQDLINQLGLKNVEAKQTRAEEVKKQFDFVTGRAVKNLPEFFMWIKNNVRRG---------------------EKNTIP--NGVLYWKGGEMDDELEVLGIRPRKVINLE 191          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A6N4WUR2_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Lentimonas TaxID=417293 RepID=A0A6N4WUR2_9BACT)

HSP 1 Score: 178 bits (452), Expect = 8.710e-51
Identity = 90/211 (42.65%), Postives = 134/211 (63.51%), Query Frame = 1
Query:  370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
            ++ ++ FP +++++W ++E+   LL +WN ++NLISR+DIE +  RH+  CLA+   +KL +G  ++DVGTGGG PG+ MAI YPQ +F LID  GKKI  V D+ ++LGL NV A HTRAE + + FDF+ GRAV +LP++  ++ KN++R                      EK++ P   GVLY +G    +ELD LG RP  V++LE
Sbjct:    4 EQLKEQFPNISEDKWPVLEKWAVLLRDWNSKINLISRKDIEYLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFLLIDAIGKKIKVVQDLIDQLGLKNVEAKHTRAEAITKQFDFVTGRAVKNLPEYFSWIKKNVRRG---------------------EKNTIP--NGVLYWKGGDMDDELDTLGIRPRKVINLE 191          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A350ARR8_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350ARR8_9BACT)

HSP 1 Score: 175 bits (443), Expect = 1.640e-49
Identity = 92/208 (44.23%), Postives = 127/208 (61.06%), Query Frame = 1
Query:  379 RKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
            R  FP ++DE W ++E+   LL EWN ++NLISR+DIE++   H+  CL +   +KL +G  V+DVGTGGG PG+ MAI YPQ +FTLID  GKKI  V D+ ++LGL NV A  TRAE +++ FDFI GRAV +LP++  ++  N+ R   RN+                      +  GVLY +G    +ELD LG RP  V++LE
Sbjct:    5 RAQFPNVSDETWPILEKWAVLLREWNEKINLISRKDIEHLEEHHLSHCLEITNHLKLMNGARVMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKIKVVQDLVDQLGLKNVEAKQTRAEQINKEFDFITGRAVKNLPEYFSWIKGNV-RKGQRNS----------------------IPNGVLYWKGGDMDDELDALGIRPRKVINLE 189          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A2E8KST0_9FLAO (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E8KST0_9FLAO)

HSP 1 Score: 174 bits (441), Expect = 2.330e-49
Identity = 89/207 (43.00%), Postives = 129/207 (62.32%), Query Frame = 1
Query:  379 RKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSL 999
            RKHFP+L D+Q A  E+LGE    WN ++NL+SR+DI+   +RHV+  LA+AKA+K  +G  +LDVGTGGGLPGLP+AI YP+V+FTL D  GKKI  V ++ E +GL N +A+H RA +V   FDFI+ RAV  + KF+ +V+  +++                           P   G+LY++G   ++EL+E+  R S +LS+
Sbjct:    5 RKHFPDLTDKQVAQFEKLGESFVHWNSQINLVSRKDIDEFYTRHVLHSLAIAKAMKFAEGSEILDVGTGGGLPGLPLAILYPEVKFTLCDSIGKKIKVVKELIEDVGLKNTKAYHRRANEVPGKFDFIVSRAVTRMNKFIPWVENKIRKRCIN-----------------------PWPNGILYLKGGDLRQELNEIN-RDSEILSI 187          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A2D7F536_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D7F536_9BACT)

HSP 1 Score: 173 bits (439), Expect = 6.460e-49
Identity = 92/212 (43.40%), Postives = 129/212 (60.85%), Query Frame = 1
Query:  376 YRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVL 1011
            Y++ FP + ++ W ++ER  ELL EWN ++NLISR+DI+ +  RH++ CLA+   + L  G  +LDVGTGGGLPGLPMAI YPQ +FTLID   KK+  V  +A+ LGL NV A   RAE +   FDF+ GRAV +LP+F+ ++  NL++               G  H         L  GV+Y +G   + EL+ LG +  TV+ LE+VL
Sbjct:    6 YQQLFPNIPEDAWPVLERWAELLREWNTKINLISRKDIDALEERHLLHCLAITNVLILNKGARILDVGTGGGLPGLPMAICYPQAKFTLIDSIAKKVEVVQTIADELGLKNVVARQVRAEALKTQFDFVTGRAVKNLPEFLSWIQNNLEK---------------GDXH--------SLPNGVIYWKGGSIEAELNPLGIQSKTVVELENVL 194          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: W7TNU2_9STRA (16s rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNU2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.660e-49
Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = 1
Query:  319 TSAIAVQPQLSYSAVGPDRYRK-HFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAI-KLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVE 888
            ++A   Q Q+  S  G     K  FPEL   QW  +ERLG L+ EWN ++N+ISR+D+ENV+S HV+PC+ ++K + K  +G  V+DVGTGGG PGLP+AI  PQV+F L+D  GKK+  V DMA RLGL NVR  HTR E+V E F+F+ GR+V ++P+FVG+V   L    S          DDG+++++
Sbjct:   44 SAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVP---DDGILYIK 232          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: D5EM03_CORAD (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EM03_CORAD)

HSP 1 Score: 171 bits (433), Expect = 4.900e-48
Identity = 91/216 (42.13%), Postives = 127/216 (58.80%), Query Frame = 1
Query:  370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEE 1017
            ++ R  FP + D  W ++     LL EWN ++NLISR+DIE++  RH+  CL +   ++L +G  ++DVGTGGG PGL MAI YPQ +FTL+D  GKKI  V D+AERLGL NV A   RAE + + FDFI GRAV +LP++  ++  NL+R   RN+                      +  GVLY +G   + EL+ LG RP   + +E  LE+
Sbjct:    2 EQIRARFPNVDDGTWTLLAEWATLLREWNEKINLISRKDIEHLEERHLAHCLVITNHLRLMNGARIMDVGTGGGFPGLIMAICYPQAQFTLVDSIGKKIGVVADIAERLGLRNVEARQCRAESIRKEFDFITGRAVKNLPEYFSWIKGNLRRG-QRNS----------------------IPNGVLYWKGGELEPELEALGIRPRLSIDVEQALED 194          
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A368BBI9_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A368BBI9_9BACT)

HSP 1 Score: 169 bits (427), Expect = 4.300e-47
Identity = 91/210 (43.33%), Postives = 125/210 (59.52%), Query Frame = 1
Query:  370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSL 999
            D  RK FP++ +  W ++E    LL EWN ++NLISR+DIE + +RH+  CL++   +KL  G  ++DVGTGGG PG+ MAI YPQ  FTLID  GKKI  V D+A++L L NV A   RAE+V + FDFI GRAV +LP++  ++  N++R                      E++S P   GVLY +G    +EL  LG RP   +SL
Sbjct:    2 DSIRKQFPQIEEAAWPLLEAWSALLREWNTKINLISRKDIEYLEARHLSHCLSITNHLKLMSGARIMDVGTGGGFPGIIMAICYPQAHFTLIDSIGKKITVVQDLADKLELKNVEARQCRAEEVKKKFDFITGRAVKNLPEYFSWIKDNVRRG---------------------ERNSIP--NGVLYWKGGELDDELAALGIRPRKTISL 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVE2_9PHAE2.940e-10548.19SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V0Z1_9STRA1.280e-5445.25Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A355SZU0_9BACT8.710e-5143.60Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A6N4WUR2_9BACT8.710e-5142.65Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A350ARR8_9BACT1.640e-4944.23Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A2E8KST0_9FLAO2.330e-4943.00Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A2D7F536_9BACT6.460e-4943.40Ribosomal RNA small subunit methyltransferase G n=... [more]
W7TNU2_9STRA7.660e-4947.4016s rrna methyltransferase n=1 Tax=Nannochloropsis... [more]
D5EM03_CORAD4.900e-4842.13Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A368BBI9_9BACT4.300e-4743.33Ribosomal RNA small subunit methyltransferase G n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54532contigH-elongata_contig54532:977..3521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.0
Seed ortholog evalue3.2e-41
Seed eggNOG ortholog583355.Caka_2145
Preferred namersmG
KEGG koko:K03501
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.Specifically methylates the N7 position of a guanine in 16S rRNA
EggNOG OGs3K82P@414999,46VAP@74201,COG0357@1,COG0357@2
EC2.1.1.170
COG Functional cat.J
Best tax levelOpitutae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionrRNA small subunit methyltransferase G
Ec32 orthologEc-10_005240.1
Exons3
Model size1119
Cds size1119
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54532.12836.1prot_H-elongata_contig54532.12836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54532 977..3521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.197786-CDS-H-elongata_contig54532:976..15411622930888.197786-CDS-H-elongata_contig54532:976..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 977..1541 +
1691679612.4664354-CDS-H-elongata_contig54532:976..15411691679612.4664354-CDS-H-elongata_contig54532:976..1541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 977..1541 +
1622930888.2208407-CDS-H-elongata_contig54532:2361..25341622930888.2208407-CDS-H-elongata_contig54532:2361..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 2362..2534 +
1691679612.4806082-CDS-H-elongata_contig54532:2361..25341691679612.4806082-CDS-H-elongata_contig54532:2361..2534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 2362..2534 +
1622930888.2410896-CDS-H-elongata_contig54532:3140..35211622930888.2410896-CDS-H-elongata_contig54532:3140..3521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 3141..3521 +
1691679612.4901211-CDS-H-elongata_contig54532:3140..35211691679612.4901211-CDS-H-elongata_contig54532:3140..3521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54532 3141..3521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54532.12836.1

>prot_H-elongata_contig54532.12836.1 ID=prot_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=373bp
ATTAATADEFDITEFDGLTRSELQAMCKRLQLRAVGKTCELVSRLREHQR
KRKQQHEERDQLLEKVTTHTHHTKDPPSPSSEELIVDVVSEEHYSPGSSF
ALDLPGTSAIAVQPQLSYSAVGPDRYRKHFPELADEQWAMVERLGELLAE
WNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPG
LPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHEL
FDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKS
SPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEERRKAATNIVAD
GPSDRGYSSVFHFTSEAIWNRAP
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mRNA from alignment at H-elongata_contig54532:977..3521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54532.12836.1 ID=mRNA_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2545bp|location=Sequence derived from alignment at H-elongata_contig54532:977..3521+ (Himanthalia elongata Himel1 dioecious)
GCGACGACTGCGGCTACCGCAGATGAGTTCGATATCACTGAATTTGATGG GCTCACGCGATCCGAACTCCAGGCGATGTGCAAGAGGCTCCAGCTACGGG CAGTTGGCAAAACATGCGAGTTGGTATCCAGACTGCGCGAGCACCAGAGG AAGCGGAAGCAGCAGCACGAGGAGCGGGATCAGTTGTTGGAAAAAGTAAC AACACATACCCATCATACCAAGGATCCACCATCTCCTTCCTCAGAGGAGC TCATTGTGGATGTGGTAAGCGAAGAACATTATAGCCCGGGATCATCTTTC GCTTTAGATTTGCCAGGGACCTCTGCTATTGCGGTTCAACCGCAGCTCTC ATATTCTGCAGTTGGCCCAGATAGATACCGCAAGCACTTCCCCGAACTCG CTGACGAACAGTGGGCGATGGTTGAGCGTCTAGGGGAGCTTCTGGCCGAG TGGAACGGAAGGATGAATCTAATCTCGAGGAGGGACATAGAAAACGTCAT GTCGCGCCACGTTGTACCGTGCCTTGCCATGGCCAAGGCGATCAAGCTCC AGGATGGAGTCAACGGTGAGCAGGGAAGTTTGTAGTATCCGAAATTTGAA ATTTTCATGTTTATAATTGTTGTCGCTGACAATTTGTACAGTAGTGTTAC GAGACTCCGAATCCCTCGTCAACGAGTTAGCAAATCTAAGCTGGCGGCGT ATTCTGCGTGCTCTTCAAGACAATTTTTCGTCGCTTGTGGGGTGGGCAAG ACGATGTGTGAACCTTTGTACCCAGCTAGGTGACTTGTTACGGTGTACAA AGTTGGTCCCCTGGACTACACCTCTCACGATGCTAAGAAGGCGTGGGTGT GCGGAGGGTTCAAATGAGTTCATACGTTAAAAAAAAAGGTATAACATACC CATATAATTATGGTTGATGGCTGTTGTCGCCAGATTTTATCTGCAACGCG CAGTCAGAAATCAAGGAGCGCTACATCTTTAAAAATATTTAACGTAGCTT GCGACGCCGGTGTTGCCCGTGCCGTCAAATAAGGGGGGAGTGTCTCATCA TGTCACACAACCATTCATGTCAACTAAAAGTACCCCTGGTACCAAGTCCC CGTCGCACCGCTGGTACCATGTCTACCACGTGGGCGCAGTCAATGACAGC CCCATGCGTACGCCTATTCAATGGCTTGTGGAGACATTTGGCCGAGAAAT GAACACGCACACCTGTAGAATTGCATTATTTTCCCCACTGTAGTTACGCG TTCGTCGTGGCGCACGGAGCCTCGGTTAATGATGTCTGACTATCATTATG ACGACCTCGTCCCATTACCACACCCCTTTCCCAATAATCTTCCTGCCGAT CTCTCAACTGTTTTTGCACCCCGAAATACACATAGTCCTGGATGTAGGAA CGGGAGGAGGTTTGCCCGGGCTCCCCATGGCCATCTACTACCCGCAGGTT GAGTTTACTCTGATCGATGGCACCGGGAAGAAGATACACGCGGTGCATGA CATGGCAGAGCGCTTAGGCCTCACGAACGTTCGAGCGTTCCACACCAGGG CAGAAGATGTTAGTCTTAATTATAGAGTTCTAGCAACAACGCTACGCTTA TGCTTATAGAGCTGTGGAAGCACGACTCATAGTTATAATTACAGCAGCGC CACTTATGCTTTGACAGACTGTAGCTGTAGGCGTTACTCTTGTATCTTTG GTTTTAAGCGGGGGGGTTTCCGATTGGACCGATCTCCAACTCGAAAAATA GAGAAGATACAAAACGCTCGAAGCACAAGGGGGGGGAACTAACCCATTTC TGTCCGGCGCGCTGGCCGTGGTCACCACATATAGGGGTGCAAACTCATTC CAGGTTTCAGGCTCGGCGTATGTTGTTGGTCACTATTAGTTGCCGATGAG GTGCTCAAGGGTTGTGCGTGACGGGATCGATTTAGTGTCGAGCGTTCCTG TCTCGTTCTACTAATAGACATGACCGAGAGAAATAGCCGTTACGTGGCTA GAGTAGTGTAGGTTCACTTTCATGAAACATCCAGTATACCGGAATGCACA ACGCTCGACTGTCTTGGCTAATATCTTATATAAGATATTTGTTTTTGCCA AGAAATCTATTTCTTTTGAACAACTGTCGCTTTTTCCTTTATTTTTTACC CCCCTCCCTCGCAGGTCCACGAGTTATTCGATTTTATCATAGGCAGGGCC GTAGCGTCGCTCCCCAAGTTCGTCGGTTTCGTCGACAAAAACTTGAAGCG AAACGCGTCCCGAAATACGATGAGTACAGTCAACGGTGATGATGACGGCG TGGTCCACGTCGAAGTGGAGAAGAGCTCGCCGCCATTGAAGCGAGGCGTG CTGTACATGCGAGGGGAGATCGACCAGGAAGAATTGGACGAGTTGGGCGC TCGGCCCTCGACGGTCTTGTCGCTTGAGCACGTGTTGGAAGAGAGAAGGA AGGCTGCGACGAACATTGTCGCAGACGGGCCTAGCGATAGAGGCTACTCA TCCGTTTTTCACTTCACTTCCGAGGCTATCTGGAACAGGGCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig54532:977..3521+

>mRNA_H-elongata_contig54532.12836.1 ID=mRNA_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2238bp|location=Sequence derived from alignment at H-elongata_contig54532:977..3521+ (Himanthalia elongata Himel1 dioecious)
GCGACGACTGCGGCTACCGCAGATGAGTTCGATATCACTGAATTTGATGG
GCTCACGCGATCCGAACTCCAGGCGATGTGCAAGAGGCTCCAGCTACGGG
CAGTTGGCAAAACATGCGAGTTGGTATCCAGACTGCGCGAGCACCAGAGG
AAGCGGAAGCAGCAGCACGAGGAGCGGGATCAGTTGTTGGAAAAAGTAAC
AACACATACCCATCATACCAAGGATCCACCATCTCCTTCCTCAGAGGAGC
TCATTGTGGATGTGGTAAGCGAAGAACATTATAGCCCGGGATCATCTTTC
GCTTTAGATTTGCCAGGGACCTCTGCTATTGCGGTTCAACCGCAGCTCTC
ATATTCTGCAGTTGGCCCAGATAGATACCGCAAGCACTTCCCCGAACTCG
CTGACGAACAGTGGGCGATGGTTGAGCGTCTAGGGGAGCTTCTGGCCGAG
TGGAACGGAAGGATGAATCTAATCTCGAGGAGGGACATAGAAAACGTCAT
GTCGCGCCACGTTGTACCGTGCCTTGCCATGGCCAAGGCGATCAAGCTCC
AGGATGGAGTCAACGGCGACGACTGCGGCTACCGCAGATGAGTTCGATAT
CACTGAATTTGATGGGCTCACGCGATCCGAACTCCAGGCGATGTGCAAGA
GGCTCCAGCTACGGGCAGTTGGCAAAACATGCGAGTTGGTATCCAGACTG
CGCGAGCACCAGAGGAAGCGGAAGCAGCAGCACGAGGAGCGGGATCAGTT
GTTGGAAAAAGTAACAACACATACCCATCATACCAAGGATCCACCATCTC
CTTCCTCAGAGGAGCTCATTGTGGATGTGGTAAGCGAAGAACATTATAGC
CCGGGATCATCTTTCGCTTTAGATTTGCCAGGGACCTCTGCTATTGCGGT
TCAACCGCAGCTCTCATATTCTGCAGTTGGCCCAGATAGATACCGCAAGC
ACTTCCCCGAACTCGCTGACGAACAGTGGGCGATGGTTGAGCGTCTAGGG
GAGCTTCTGGCCGAGTGGAACGGAAGGATGAATCTAATCTCGAGGAGGGA
CATAGAAAACGTCATGTCGCGCCACGTTGTACCGTGCCTTGCCATGGCCA
AGGCGATCAAGCTCCAGGATGGAGTCAACGTCCTGGATGTAGGAACGGGA
GGAGGTTTGCCCGGGCTCCCCATGGCCATCTACTACCCGCAGGTTGAGTT
TACTCTGATCGATGGCACCGGGAAGAAGATACACGCGGTGCATGACATGG
CAGAGCGCTTAGGCCTCACGAACGTTCGAGCGTTCCACACCAGGGCAGAA
GATTCCTGGATGTAGGAACGGGAGGAGGTTTGCCCGGGCTCCCCATGGCC
ATCTACTACCCGCAGGTTGAGTTTACTCTGATCGATGGCACCGGGAAGAA
GATACACGCGGTGCATGACATGGCAGAGCGCTTAGGCCTCACGAACGTTC
GAGCGTTCCACACCAGGGCAGAAGATGTCCACGAGTTATTCGATTTTATC
ATAGGCAGGGCCGTAGCGTCGCTCCCCAAGTTCGTCGGTTTCGTCGACAA
AAACTTGAAGCGAAACGCGTCCCGAAATACGATGAGTACAGTCAACGGTG
ATGATGACGGCGTGGTCCACGTCGAAGTGGAGAAGAGCTCGCCGCCATTG
AAGCGAGGCGTGCTGTACATGCGAGGGGAGATCGACCAGGAAGAATTGGA
CGAGTTGGGCGCTCGGCCCTCGACGGTCTTGTCGCTTGAGCACGTGTTGG
AAGAGAGAAGGAAGGCTGCGACGAACATTGTCGCAGACGGGCCTAGCGAT
AGAGGCTACTCATCCGTTTTTCACTTCACTTCCGAGGCTATCTGGAACAG
GGCGCCGGTCCACGAGTTATTCGATTTTATCATAGGCAGGGCCGTAGCGT
CGCTCCCCAAGTTCGTCGGTTTCGTCGACAAAAACTTGAAGCGAAACGCG
TCCCGAAATACGATGAGTACAGTCAACGGTGATGATGACGGCGTGGTCCA
CGTCGAAGTGGAGAAGAGCTCGCCGCCATTGAAGCGAGGCGTGCTGTACA
TGCGAGGGGAGATCGACCAGGAAGAATTGGACGAGTTGGGCGCTCGGCCC
TCGACGGTCTTGTCGCTTGAGCACGTGTTGGAAGAGAGAAGGAAGGCTGC
GACGAACATTGTCGCAGACGGGCCTAGCGATAGAGGCTACTCATCCGTTT
TTCACTTCACTTCCGAGGCTATCTGGAACAGGGCGCCG
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