mRNA_H-elongata_contig54510.12835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54510.12835.1
Unique NamemRNA_H-elongata_contig54510.12835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54510.12835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54510contigH-elongata_contig54510:130..797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.098537-CDS-H-elongata_contig54510:129..2321622930888.098537-CDS-H-elongata_contig54510:129..232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54510 130..232 +
1691679612.4330623-CDS-H-elongata_contig54510:129..2321691679612.4330623-CDS-H-elongata_contig54510:129..232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54510 130..232 +
1622930888.126248-CDS-H-elongata_contig54510:651..7971622930888.126248-CDS-H-elongata_contig54510:651..797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54510 652..797 +
1691679612.4502223-CDS-H-elongata_contig54510:651..7971691679612.4502223-CDS-H-elongata_contig54510:651..797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54510 652..797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54510.12835.1prot_H-elongata_contig54510.12835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54510 130..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54510.12835.1

>prot_H-elongata_contig54510.12835.1 ID=prot_H-elongata_contig54510.12835.1|Name=mRNA_H-elongata_contig54510.12835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
QGSADDRRRRLETTSRLPPLCAGAPRDWPHAGASDSADLVHEGPIIAFRL
AKHFLRHVPTRHFLSQLAEGANNVRGRPRGAMD
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mRNA from alignment at H-elongata_contig54510:130..797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54510.12835.1 ID=mRNA_H-elongata_contig54510.12835.1|Name=mRNA_H-elongata_contig54510.12835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=668bp|location=Sequence derived from alignment at H-elongata_contig54510:130..797+ (Himanthalia elongata Himel1 dioecious)
CAAGGATCGGCTGATGATCGTCGGCGGCGACTCGAAACGACATCGCGTCT
GCCACCCTTGTGTGCAGGCGCACCTCGCGACTGGCCGCACGCTGGAGCAT
CGGGTGAGCCGATCCGTTTTATTATCTTGCCTCTCGAGCTACCTGGGGTT
TTGTTTTGTCATATCTCGAGTCGAGGCCATAAGGGAAATGTCTTGCTCGA
ATGAACCGCTCTTGTCATAATCGTCTTTGTCGGGAATAACTTTGCGCCCG
ATGCGGCTTAGTATGCTCTCGTAGCAGCGGCGGGGGCGGCAATCATGGAA
CTGTGAATGCTACCATCTTCCTAATTAGATTGTCCATCTGATAATAATAT
CGCCCGTCTCTCACGCAACTGTCGTGAGCAACTGGTGACGTGGCGGGACT
AAGCCTTCCATTTACTCCTTGGAAGTGTCCGTAACGCAATGGCTTCCCTC
CCCCCCCCCGCCTCCTTCCTTCCTCGCATAACCACGGTTTTAAACGGCAT
CCACACACAACTCGTGTGGTAGATTCTGCGGATCTCGTCCACGAGGGTCC
TATCATCGCCTTTAGACTCGCGAAACACTTCTTGCGACACGTCCCGACAC
GGCACTTCCTCAGCCAACTCGCTGAGGGCGCTAACAACGTACGCGGAAGA
CCCCGAGGAGCCATGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig54510:130..797+

>mRNA_H-elongata_contig54510.12835.1 ID=mRNA_H-elongata_contig54510.12835.1|Name=mRNA_H-elongata_contig54510.12835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig54510:130..797+ (Himanthalia elongata Himel1 dioecious)
CAAGGATCGGCTGATGATCGTCGGCGGCGACTCGAAACGACATCGCGTCT
GCCACCCTTGTGTGCAGGCGCACCTCGCGACTGGCCGCACGCTGGAGCAT
CGGCAAGGATCGGCTGATGATCGTCGGCGGCGACTCGAAACGACATCGCG
TCTGCCACCCTTGTGTGCAGGCGCACCTCGCGACTGGCCGCACGCTGGAG
CATCGGATTCTGCGGATCTCGTCCACGAGGGTCCTATCATCGCCTTTAGA
CTCGCGAAACACTTCTTGCGACACGTCCCGACACGGCACTTCCTCAGCCA
ACTCGCTGAGGGCGCTAACAACGTACGCGGAAGACCCCGAGGAGCCATGG
ACATTCTGCGGATCTCGTCCACGAGGGTCCTATCATCGCCTTTAGACTCG
CGAAACACTTCTTGCGACACGTCCCGACACGGCACTTCCTCAGCCAACTC
GCTGAGGGCGCTAACAACGTACGCGGAAGACCCCGAGGAGCCATGGAC
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