mRNA_H-elongata_contig5449.12833.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.960e-49 Identity = 81/179 (45.25%), Postives = 113/179 (63.13%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAFG 540
Y Q F LGG V + D++ EI +R W + RY REL+D+P+ LK R+++AEA+EALLYGC TW+ Y LR++HHR+LL +IG + K+ +R SY + L CES++ +R RR+L+AG L R GRLPKR+ FG L G +R RGG+ + W CV D++AFG
Sbjct: 72 YAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.280e-45 Identity = 81/179 (45.25%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAFG 540
Y Q F GG V D++ EI +R W + RY REL+D+PK LK R+++AEA+EALLYGC TW+ Y LR++HHR+L +IG + K+ +R SY R LE C+S++ +R RR+L+AG L R GRLPKR+ FG L G +R RGG+ + W CV D++AFG
Sbjct: 335 YAQTTEFQYPGGLVNDHGDLTREINCRSRGAWACLRRYGRELFDRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.660e-45 Identity = 77/178 (43.26%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAF 537
Y Q F LGG V + D++ EI ++A W I RY EL+D+P LK R+++AEA+EALLYGC TW+ R+N Y L+T HHR+LL +IG + KR +R SY +AL+ C+S++ +R RR+L+AG + R GRLPKR+ FG L G +G + W C++ D++ F
Sbjct: 51 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 160 bits (405), Expect = 6.660e-45 Identity = 78/187 (41.71%), Postives = 114/187 (60.96%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAFG---ITGHW 555
Y Q F LGG + + D++ EI ++A W I RY EL+D+P LK R+++AEA+EALLYGC TW+ R+N Y L+T HHR+LL +IG + KR +R SY +AL+ C+S++ +R RR+L+AG + R GRLPKR+ FG L G +G + W C++ D++ F + G W
Sbjct: 102 YAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.290e-44 Identity = 75/176 (42.61%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIR 531
Y Q F LGG V + D++ EI +R W + RY REL+D+P+ LK R+++AEA+EALLYGC TW+ Y LR++HHR+LL ++G + K+ +R + + L+ C+S+ +R RRIL+AG L R GRLPKR+ FG L G +R RGG+ + W CV D++
Sbjct: 72 YAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLK 247
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 166 bits (421), Expect = 2.080e-44 Identity = 80/179 (44.69%), Postives = 113/179 (63.13%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAFG 540
Y Q F LGG V + D++ EI +R W + RY REL+D+P+ LK R+++AEA+EALLYGC TW+ Y LR++HHR+LL +IG + K+ +R SY + L+ C+S++ +R RR+L+AG L R GRLPKR+ FG L G +R RGG+ + W CV D+ AFG
Sbjct: 424 YAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.200e-44 Identity = 77/178 (43.26%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAF 537
Y Q F LGG V + D++ EI ++A W I RY EL+D+P LK R+++AEA+EALLYGC TW+ R+N Y L+T HHR+LL +IG + KR +R SY +AL+ C+S++ +R RR+L+AG + R GRLPKR+ FG L G +G + W C++ D++ F
Sbjct: 70 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 5.120e-44 Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAFG 540
Y Q F LGG + +D++ EI +R W + R REL+D+P+ LK R+++AEA+EALLYGC TW+ Y LR++HHR+LL +IG + K+ +R SY +A + C+S++ +R RR+L A L R GRLPKR+ G L G +R RGG+ + W CV D++AFG
Sbjct: 52 YAQTTEFRDLGGLANEHSDLTREISYRSRGAWACLRRCGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLNGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 162 bits (409), Expect = 4.550e-43 Identity = 78/178 (43.82%), Postives = 111/178 (62.36%), Query Frame = 1
Query: 4 YRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAF 537
Y Q F LGG V + D++ EI ++A W I RY EL+D+P LK R+++AEA+EALLYGC TW+ R+N Y L+T HHR+LL +IG + KR +R SY +AL+ C+S++ +R RR+L+AG + R GRLPKR+ FG L G RG + W C++ D++ F
Sbjct: 353 YAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 530
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE) HSP 1 Score: 158 bits (400), Expect = 5.860e-43 Identity = 76/179 (42.46%), Postives = 111/179 (62.01%), Query Frame = 1
Query: 1 SYRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVALSLKTRMVKAEAIEALLYGCSTWTLRKNDYAKLRTVHHRVLLCIIGIQSKRPDHRMTSYNRALEITRCESIDTMLRTRRILWAGTLIRISGGRLPKRIAFGNLEGAVRRERGGKVKEWNDCVQSDIRAF 537
+Y Q F LGG V + D++ EI +R W + RY REL+D+P+ LK R+++AEA+EALLYGC TW+ Y LR++HHR+LL +IG + K+ +R SY + L+ C+S++ +R RR+L AG L R S GRLPKR+ G L G +R + G+ + W CV ++AF
Sbjct: 71 NYAQTTEFRYLGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQNWPTCVLDYLKAF 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5449.12833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5449.12833.1 >prot_H-elongata_contig5449.12833.1 ID=prot_H-elongata_contig5449.12833.1|Name=mRNA_H-elongata_contig5449.12833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp SYRQVQSFTSLGGAVTQTTDMSVEIVRWARACWNRIMRYLRELYDQPKVAback to top mRNA from alignment at H-elongata_contig5449:8058..8672+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5449.12833.1 ID=mRNA_H-elongata_contig5449.12833.1|Name=mRNA_H-elongata_contig5449.12833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig5449:8058..8672+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5449:8058..8672+ >mRNA_H-elongata_contig5449.12833.1 ID=mRNA_H-elongata_contig5449.12833.1|Name=mRNA_H-elongata_contig5449.12833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig5449:8058..8672+ (Himanthalia elongata Himel1 dioecious)back to top |