mRNA_H-elongata_contig54472.12828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54472.12828.1
Unique NamemRNA_H-elongata_contig54472.12828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54472.12828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54472contigH-elongata_contig54472:541..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.5302784-CDS-H-elongata_contig54472:540..9481622930887.5302784-CDS-H-elongata_contig54472:540..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54472 541..948 +
1691679612.2375755-CDS-H-elongata_contig54472:540..9481691679612.2375755-CDS-H-elongata_contig54472:540..948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54472 541..948 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.547322-UTR-H-elongata_contig54472:948..10061622930887.547322-UTR-H-elongata_contig54472:948..1006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54472 949..1006 +
1691679612.245864-UTR-H-elongata_contig54472:948..10061691679612.245864-UTR-H-elongata_contig54472:948..1006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54472 949..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54472.12828.1prot_H-elongata_contig54472.12828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54472 541..948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54472.12828.1

>prot_H-elongata_contig54472.12828.1 ID=prot_H-elongata_contig54472.12828.1|Name=mRNA_H-elongata_contig54472.12828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
SLFPSLTHTHTHTHKHIHAKRSGIFHHEGITFSPVILCHYCSSTWCGNVQ
DTRMKKYALNQGSHCTVSYFFKTSALSQNACLFFARFYFSLLRAQRCCQP
PTANRQPNRPPHPSDCRVPMIYLSLPPFHSICMLY*
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mRNA from alignment at H-elongata_contig54472:541..1006+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54472.12828.1 ID=mRNA_H-elongata_contig54472.12828.1|Name=mRNA_H-elongata_contig54472.12828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=466bp|location=Sequence derived from alignment at H-elongata_contig54472:541..1006+ (Himanthalia elongata Himel1 dioecious)
TCCCTCTTCCCCTCCCTCACACACACACACACACACACACACAAACATAT
ACACGCGAAACGTAGCGGTATTTTCCACCATGAAGGGATAACGTTTTCTC
CCGTAATCCTGTGCCATTATTGCTCTTCTACATGGTGTGGAAACGTCCAA
GATACACGGATGAAGAAATACGCGCTAAATCAAGGATCTCACTGTACTGT
ATCGTACTTCTTCAAGACTTCAGCACTATCGCAAAACGCATGCCTTTTTT
TTGCTCGATTTTACTTCTCTCTCCTGCGCGCCCAAAGGTGCTGCCAACCG
CCAACCGCCAACCGCCAACCGAACCGACCTCCCCACCCGTCCGACTGTCG
CGTTCCAATGATTTATCTCTCTCTGCCTCCCTTTCACTCGATCTGCATGC
TCTATTGATATCCATCCTCAACGCAAAACACATATACCAGGTAGGTCTTG
GGGTAGGGGGTATAAA
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Coding sequence (CDS) from alignment at H-elongata_contig54472:541..1006+

>mRNA_H-elongata_contig54472.12828.1 ID=mRNA_H-elongata_contig54472.12828.1|Name=mRNA_H-elongata_contig54472.12828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig54472:541..1006+ (Himanthalia elongata Himel1 dioecious)
TCCCTCTTCCCCTCCCTCACACACACACACACACACACACACAAACATAT
ACACGCGAAACGTAGCGGTATTTTCCACCATGAAGGGATAACGTTTTCTC
CCGTAATCCTGTGCCATTATTGCTCTTCTACATGGTGTGGAAACGTCCAA
GATACACGGATGAAGAAATACGCGCTAAATCAAGGATCTCACTGTACTGT
ATCGTACTTCTTCAAGACTTCAGCACTATCGCAAAACGCATGCCTTTTTT
TTGCTCGATTTTACTTCTCTCTCCTGCGCGCCCAAAGGTGCTGCCAACCG
CCAACCGCCAACCGCCAACCGAACCGACCTCCCCACCCGTCCGACTGTCG
CGTTCCAATGATTTATCTCTCTCTGCCTCCCTTTCACTCGATCTGCATGC
TCTATTGATCCCTCTTCCCCTCCCTCACACACACACACACACACACACAC
AAACATATACACGCGAAACGTAGCGGTATTTTCCACCATGAAGGGATAAC
GTTTTCTCCCGTAATCCTGTGCCATTATTGCTCTTCTACATGGTGTGGAA
ACGTCCAAGATACACGGATGAAGAAATACGCGCTAAATCAAGGATCTCAC
TGTACTGTATCGTACTTCTTCAAGACTTCAGCACTATCGCAAAACGCATG
CCTTTTTTTTGCTCGATTTTACTTCTCTCTCCTGCGCGCCCAAAGGTGCT
GCCAACCGCCAACCGCCAACCGCCAACCGAACCGACCTCCCCACCCGTCC
GACTGTCGCGTTCCAATGATTTATCTCTCTCTGCCTCCCTTTCACTCGAT
CTGCATGCTCTATTGA
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