mRNA_H-elongata_contig54463.12827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54463.12827.1
Unique NamemRNA_H-elongata_contig54463.12827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 3.780e-43
Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    7 LTLRDVCQQEFYRFQERFKEAKMKDYPLGALFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
            LT+++VCQQEF RF  RF +  + DYP+  L +FWA EG +LYPNMAR ARVLLSVPA+SAVLERDFSTAGRL+TG+RSRL+  Y+EM LFLNGNQEYIP+EVP L
Sbjct:  682 LTMKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKL 787          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.870e-16
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
            + K+W +  H+ YP +ARVARV+   PA++AVLERDFS AGR++T SRS +  +Y+EM +FL+GN + IP ++  L
Sbjct:  607 VLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKL 681          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.750e-15
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   94 ALFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPS 321
            ++ K+W     S YP +AR ARV+   PA++AVLE DF  AGR++T SRS    +Y+EM LFL+GN + IP ++P+
Sbjct:   36 SVLKWWK-RWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPA 110          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
            + K+W +  H+ YP +ARVARV++   A++AVLE DFS AGR++T SRS +  +Y+EM LFL+GN + IP ++  L
Sbjct:  380 VLKWWKMWAHA-YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL 454          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.610e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  130 LYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRL-AGEYIEMTLFLNGNQEYIPIEVPSL 324
            +YP +ARVARV+   PA++AVLERDFS AGR++T SR  + +  Y+EM LFL+GN + IP ++  L
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL 70          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.590e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   97 LFKFWAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPIEVPSL 324
            + ++W   G  LYP +AR ARV+   PA++AVLERDF+ A  ++  SRS    +Y+EM LFL+GN + IP ++P L
Sbjct:  547 VLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPEL 621          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.830e-10
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  151 VARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPI-EVPSL 324
            VARVL S+P++SA +ERDF TAGR++T  RS LA   ++MT FLN N+ Y+ I + P L
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKL 100          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: A0A1A8IFU3_NOTKU (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8IFU3_NOTKU)

HSP 1 Score: 60.8 bits (146), Expect = 9.160e-10
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  109 WAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQE 297
            W  E HSLYP+++++A   L VP  S   ER FSTAG ++T SRS L+ E++++ +FL  N E
Sbjct:   45 WWKEHHSLYPHLSKLALCYLVVPGTSVPSERVFSTAGDIVTASRSVLSAEHVDILIFLKKNME 107          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 62.8 bits (151), Expect = 1.450e-9
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  109 WAVEGHSLYPNMARVARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGN 291
            W  E   ++P++AR+AR +LS+PA SA  ERDFSTAG +++  RS+L+ E ++  LFL+ N
Sbjct:  173 WWKEHSEMFPSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 59.3 bits (142), Expect = 4.970e-9
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  151 VARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEYIPI 309
            VARV+ S+P++SA +ERDF TAGR++T  R+ LA   ++MT FLN N+ Y+ I
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNI 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54463.12827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.780e-4370.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE5.870e-1650.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE7.750e-1547.37Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.700e-1448.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE5.610e-1453.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI6.590e-1246.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA3.830e-1054.24Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A1A8IFU3_NOTKU9.160e-1046.03Dimer_Tnp_hAT domain-containing protein n=2 Tax=No... [more]
UPI0019661A931.450e-947.54zinc finger BED domain-containing protein DAYSLEEP... [more]
H3GTQ6_PHYRM4.970e-952.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54463contigH-elongata_contig54463:275..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.4746742-CDS-H-elongata_contig54463:274..5981622930887.4746742-CDS-H-elongata_contig54463:274..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54463 275..598 -
1691679612.2291827-CDS-H-elongata_contig54463:274..5981691679612.2291827-CDS-H-elongata_contig54463:274..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54463 275..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54463.12827.1prot_H-elongata_contig54463.12827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54463 275..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54463.12827.1

>prot_H-elongata_contig54463.12827.1 ID=prot_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
PKLTLRDVCQQEFYRFQERFKEAKMKDYPLGALFKFWAVEGHSLYPNMAR
VARVLLSVPANSAVLERDFSTAGRLLTGSRSRLAGEYIEMTLFLNGNQEY
IPIEVPSL
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mRNA from alignment at H-elongata_contig54463:275..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54463.12827.1 ID=mRNA_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig54463:275..598- (Himanthalia elongata Himel1 dioecious)
CCCAAGCTAACCTTGCGCGACGTATGTCAACAGGAATTTTATCGCTTCCA AGAGCGCTTCAAAGAGGCAAAGATGAAAGACTACCCGCTGGGGGCGCTGT TTAAGTTCTGGGCCGTGGAGGGGCACTCGCTCTACCCGAACATGGCGCGT GTGGCTCGAGTTCTGCTGTCGGTGCCGGCAAATTCTGCCGTCCTCGAGCG GGACTTCAGCACGGCTGGCCGCCTTCTTACCGGGTCCCGCAGCCGACTGG CGGGGGAGTACATCGAGATGACGCTGTTTCTCAATGGGAACCAGGAGTAC ATCCCGATTGAGGTGCCCTCGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig54463:275..598-

>mRNA_H-elongata_contig54463.12827.1 ID=mRNA_H-elongata_contig54463.12827.1|Name=mRNA_H-elongata_contig54463.12827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig54463:275..598- (Himanthalia elongata Himel1 dioecious)
CCCAAGCTAACCTTGCGCGACGTATGTCAACAGGAATTTTATCGCTTCCA
AGAGCGCTTCAAAGAGGCAAAGATGAAAGACTACCCGCTGGGGGCGCTGT
TTAAGTTCTGGGCCGTGGAGGGGCACTCGCTCTACCCGAACATGGCGCGT
GTGGCTCGAGTTCTGCTGTCGGTGCCGGCAAATTCTGCCGTCCTCGAGCG
GGACTTCAGCACGGCTGGCCGCCTTCTTACCGGGTCCCGCAGCCGACTGG
CGGGGGAGTACATCGAGATGACGCTGTTTCTCAATGGGAACCAGGAGTAC
ATCCCGATTGAGGTGCCCTCGCTGCCCAAGCTAACCTTGCGCGACGTATG
TCAACAGGAATTTTATCGCTTCCAAGAGCGCTTCAAAGAGGCAAAGATGA
AAGACTACCCGCTGGGGGCGCTGTTTAAGTTCTGGGCCGTGGAGGGGCAC
TCGCTCTACCCGAACATGGCGCGTGTGGCTCGAGTTCTGCTGTCGGTGCC
GGCAAATTCTGCCGTCCTCGAGCGGGACTTCAGCACGGCTGGCCGCCTTC
TTACCGGGTCCCGCAGCCGACTGGCGGGGGAGTACATCGAGATGACGCTG
TTTCTCAATGGGAACCAGGAGTACATCCCGATTGAGGTGCCCTCGCTG
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