mRNA_H-elongata_contig54441.12824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54441.12824.1
Unique NamemRNA_H-elongata_contig54441.12824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54441.12824.1 vs. uniprot
Match: D8LCH8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.280e-40
Identity = 86/171 (50.29%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:    1 RPDRVGNFHRALDNEVVRLAFGEFCRRTLSSENVEFVRQVRELHRSSSAKGTTAEQLREKLRFIAEKFLGTESDTEVNVKGSSRVDALCAIEAALEASKN-------------YRGGAKNNGEGPW---AWVLATAATDSLVHLARDVHPLIFDGIWPRFLLSDEFQDMMN 465
            R  R  NFH A+DN +V +AF  FC + LSSENVEFV QVRE+++    + TTA  LREKLR +A  F+   S TEVNVKGS+R  ALCAI AALEA+ +              RG A      P    AW LA  A ++L  LA +VH +IFDG+WPRFL+S+EF  MMN
Sbjct:   97 RGRREENFHAAMDNRLVYMAFSSFCNKNLSSENVEFVLQVREVNQLLEMEETTAGDLREKLRQVAVAFVNPNSATEVNVKGSTRASALCAIGAALEAAGHDGCXXXXXXXXXXXRGSAGKESCCPGTSCAWALAEEAIEALARLAEEVHSVIFDGLWPRFLVSEEFHAMMN 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54441.12824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCH8_ECTSI1.280e-4050.29RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54441contigH-elongata_contig54441:1692..3776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-26_005110.1
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.1994243-CDS-H-elongata_contig54441:1691..18081622930887.1994243-CDS-H-elongata_contig54441:1691..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54441 1692..1808 +
1691679612.1033382-CDS-H-elongata_contig54441:1691..18081691679612.1033382-CDS-H-elongata_contig54441:1691..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54441 1692..1808 +
1622930887.2144134-CDS-H-elongata_contig54441:3428..37761622930887.2144134-CDS-H-elongata_contig54441:3428..3776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54441 3429..3776 +
1691679612.1121013-CDS-H-elongata_contig54441:3428..37761691679612.1121013-CDS-H-elongata_contig54441:3428..3776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54441 3429..3776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54441.12824.1prot_H-elongata_contig54441.12824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54441 1692..3776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54441.12824.1

>prot_H-elongata_contig54441.12824.1 ID=prot_H-elongata_contig54441.12824.1|Name=mRNA_H-elongata_contig54441.12824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
RPDRVGNFHRALDNEVVRLAFGEFCRRTLSSENVEFVRQVRELHRSSSAK
GTTAEQLREKLRFIAEKFLGTESDTEVNVKGSSRVDALCAIEAALEASKN
YRGGAKNNGEGPWAWVLATAATDSLVHLARDVHPLIFDGIWPRFLLSDEF
QDMMN
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mRNA from alignment at H-elongata_contig54441:1692..3776+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54441.12824.1 ID=mRNA_H-elongata_contig54441.12824.1|Name=mRNA_H-elongata_contig54441.12824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2085bp|location=Sequence derived from alignment at H-elongata_contig54441:1692..3776+ (Himanthalia elongata Himel1 dioecious)
CGTCCCGACCGCGTTGGAAACTTCCACCGTGCCCTCGACAACGAGGTTGT
GCGTCTTGCTTTCGGGGAGTTCTGCAGGAGGACGCTCTCCTCGGAGAATG
TGGAATTCGTTCGTCAGGTGAAGAGGTTTCTGCTTTGTTGTCTCTCATTG
GGATGCTCCCTCTCTCTTCTATAAATACGCACTGCAGTGTTAATCACGAA
ATCTGTAATGCCACCCGATCAACTGTTCTGTCTATAGTTTTCAATTTTCC
GTTTTCAATTATTTCTCCGTCAGCCCACTGGACGGAGACAAAAGAGAGTT
CTTGGCTCTGCTCACAGCTTTCCAGCTAGCTCCACAGCTTGCTTTCGGCA
CCAAACCGGGGCAGCGGGGTATTATTTGTGATCTACCGCCATGATAACTT
TTTGTGTGAACAGAGGGGGGGCTCTATAGATTTTTGGAGTAAAGTCGCTG
CAGACAGGGAGTAACCTGCACGCGTACCGCTGAATCATTCCTCCGCAGCA
AGATAGTTATTCCTTGGAGAGGAGACTTATCCTCCGGTGGCAGCGAAATA
TTAGCTTGGTTACATCAAGTCTCTCGAAAGCCGGACCCTACGTGCATGTT
TCCCGAATGCCCTACAGTAAACTTCTCTATTTTTTATTATAATTTTTTAA
AATAGTAATATTATTTTTTATTACAGTAGTAGTAAATAAAAATACTTGGG
TTCGCTCGAGATATGATACCAACGCCTTCTATTTTTATTTTAAAACATAT
GAACTACAGTTATTCCAACCCTCCGAACATCCACACCTTCCTAGAACCAT
GAGAGGTGTAGTCCAGGGGACCAACTATATCGTCAGGTTCGAATGTGGAC
ATTTTAACCACACATGGTGGTTATGGGGGGGGGTTAGGCGTAGCATTATC
CATATGTAGAGAGTTATCATGCATCTCGATTGAGGTTGTAGGGGTGTAAT
TATTTTTATTAGAAAAACATTGAAGATGAGCGTTTTGTAGTGCGTGTAAC
TGTCGTGCGTAATCCTAAAACCCTCTTCAGGTACAGTACAAAGTACAGTA
GTACAGAGAGGATGTGATTTTGTGTTGGGTCCTTCGGCAGTGGATTATGT
TGCATTTTCTCCTCGGAGGCTCTTCTTTCCAAGAGCTCCAGGTTCTATGT
TTCCACCACATCATGGCAAACGAAGGCACAGACTGCTTGCTGCGCATTCA
AGAGATCTTCACCGCCCATCTATTGGCTACTGTTGCATTATTAATAAAAT
TTCCGCCACAGGGATAATAAGGGGAAACTACACTGCCGTTGAGCCGGTGG
GACTTTTGAGTTAGTTTTCGAATCCATTTCGCTGGAAATATGGTTTCTTA
TTTACCCTTGTCATACACACTGACACGACAATACACGCACACCAACCACA
CTGCTGATTGATCATTGATTGATTTCTCACATATTCATATTAATAGTAAG
CTGATGGAAAAATCCAGCCCATGGTTAGAGGCTAGAAATAAAACAAAAAA
CGTCATCCAGGAGGAAAACGTACACACTGCTTGTGAGTTGAGTTCGCTGT
CATCGGCGGCAAAAAGTGCCTACGCACGACCCTTCCCCTTCGCTCCTCTT
TTCATTATTAACCCCTGTAGAACTCGATCTGTTTCTTACATACTAAATTC
AGTGCAAAGATTTCCTTAAGGGTTTTAATCTCACTCGATCGTCGTGTATT
TAATACCATAAAAATTAAAATTAAAAAAAATCATCAGGTGCGTGAACTTC
ACCGCTCGTCTTCAGCCAAGGGGACAACAGCAGAGCAGCTTAGAGAAAAG
CTCCGTTTCATCGCCGAAAAATTTCTCGGCACGGAGAGCGATACTGAAGT
CAATGTCAAGGGATCCTCCAGGGTGGACGCGCTGTGTGCGATCGAAGCCG
CGCTGGAAGCGAGCAAGAATTATCGCGGTGGGGCAAAAAATAATGGCGAA
GGACCATGGGCATGGGTGCTAGCGACGGCGGCAACAGATTCGCTTGTACA
TCTTGCTCGGGATGTTCACCCTCTCATTTTCGACGGAATTTGGCCGCGCT
TTCTACTGTCGGATGAGTTTCAAGACATGATGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig54441:1692..3776+

>mRNA_H-elongata_contig54441.12824.1 ID=mRNA_H-elongata_contig54441.12824.1|Name=mRNA_H-elongata_contig54441.12824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig54441:1692..3776+ (Himanthalia elongata Himel1 dioecious)
CGTCCCGACCGCGTTGGAAACTTCCACCGTGCCCTCGACAACGAGGTTGT
GCGTCTTGCTTTCGGGGAGTTCTGCAGGAGGACGCTCTCCTCGGAGAATG
TGGAATTCGTTCGTCAGCGTCCCGACCGCGTTGGAAACTTCCACCGTGCC
CTCGACAACGAGGTTGTGCGTCTTGCTTTCGGGGAGTTCTGCAGGAGGAC
GCTCTCCTCGGAGAATGTGGAATTCGTTCGTCAGGTGCGTGAACTTCACC
GCTCGTCTTCAGCCAAGGGGACAACAGCAGAGCAGCTTAGAGAAAAGCTC
CGTTTCATCGCCGAAAAATTTCTCGGCACGGAGAGCGATACTGAAGTCAA
TGTCAAGGGATCCTCCAGGGTGGACGCGCTGTGTGCGATCGAAGCCGCGC
TGGAAGCGAGCAAGAATTATCGCGGTGGGGCAAAAAATAATGGCGAAGGA
CCATGGGCATGGGTGCTAGCGACGGCGGCAACAGATTCGCTTGTACATCT
TGCTCGGGATGTTCACCCTCTCATTTTCGACGGAATTTGGCCGCGCTTTC
TACTGTCGGATGAGTTTCAAGACATGATGAACGTGCGTGAACTTCACCGC
TCGTCTTCAGCCAAGGGGACAACAGCAGAGCAGCTTAGAGAAAAGCTCCG
TTTCATCGCCGAAAAATTTCTCGGCACGGAGAGCGATACTGAAGTCAATG
TCAAGGGATCCTCCAGGGTGGACGCGCTGTGTGCGATCGAAGCCGCGCTG
GAAGCGAGCAAGAATTATCGCGGTGGGGCAAAAAATAATGGCGAAGGACC
ATGGGCATGGGTGCTAGCGACGGCGGCAACAGATTCGCTTGTACATCTTG
CTCGGGATGTTCACCCTCTCATTTTCGACGGAATTTGGCCGCGCTTTCTA
CTGTCGGATGAGTTTCAAGACATGATGAAC
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