mRNA_H-elongata_contig54391.12814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54391.12814.1
Unique NamemRNA_H-elongata_contig54391.12814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54391.12814.1 vs. uniprot
Match: D7G6I1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.360e-25
Identity = 59/112 (52.68%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:    1 GRLYFQAGGEKDVQRWLVPLRVLVKFCDFENDGRTLPKEFLDLAIRRRLVRAQNHRGQTPLHLAAAFTGSEA--------SVIGASEVVEAIQRVSTWLIEYGADPNTYDGQ 312
            GRLYFQA  E ++Q+WL+ LR LVKF DF+N+ R LP E+L    R RLVRA N+ G+TPLHLA AF G           S     EV  A+QRV+TWL+E GA+PN  D Q
Sbjct: 1574 GRLYFQASNEVELQQWLLALRALVKFYDFKNEKRQLPMEYLHQGTRERLVRATNNLGETPLHLAVAFAGRTGMGDRRESDSGCDKREVGIAVQRVATWLLENGANPNACDEQ 1685
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54391.12814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6I1_ECTSI1.360e-2552.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54391contigH-elongata_contig54391:419..1609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.6e-22
Seed eggNOG ortholog2880.D7G6I1
Preferred namemyoG
KEGG koko:K10352,ko:K10357,ko:K10359,ko:K10361
KEGG Pathwayko04530,map04530
GOsGO:0006935,GO:0006996,GO:0007010,GO:0007015,GO:0007163,GO:0008104,GO:0008150,GO:0008154,GO:0009605,GO:0009987,GO:0016043,GO:0022607,GO:0030010,GO:0030029,GO:0030036,GO:0030041,GO:0030587,GO:0032502,GO:0033036,GO:0034613,GO:0034622,GO:0040011,GO:0042221,GO:0042330,GO:0043327,GO:0043933,GO:0044085,GO:0048856,GO:0050896,GO:0051179,GO:0051258,GO:0051641,GO:0051703,GO:0051704,GO:0065003,GO:0070727,GO:0071840,GO:0072657,GO:0090702,GO:0097435,GO:0099120
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size316
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54391.12814.1prot_H-elongata_contig54391.12814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54391 419..1607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.0567656-CDS-H-elongata_contig54391:418..5221622930886.0567656-CDS-H-elongata_contig54391:418..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 419..522 +
1691679611.73963-CDS-H-elongata_contig54391:418..5221691679611.73963-CDS-H-elongata_contig54391:418..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 419..522 +
1622930886.0774894-CDS-H-elongata_contig54391:930..10811622930886.0774894-CDS-H-elongata_contig54391:930..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 931..1081 +
1691679611.7524889-CDS-H-elongata_contig54391:930..10811691679611.7524889-CDS-H-elongata_contig54391:930..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 931..1081 +
1622930886.0911093-CDS-H-elongata_contig54391:1550..16071622930886.0911093-CDS-H-elongata_contig54391:1550..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1551..1607 +
1691679611.7608564-CDS-H-elongata_contig54391:1550..16071691679611.7608564-CDS-H-elongata_contig54391:1550..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1551..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54391.12814.1

>prot_H-elongata_contig54391.12814.1 ID=prot_H-elongata_contig54391.12814.1|Name=mRNA_H-elongata_contig54391.12814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
GRLYFQAGGEKDVQRWLVPLRVLVKFCDFENDGRTLPKEFLDLAIRRRLV
RAQNHRGQTPLHLAAAFTGSEASVIGASEVVEAIQRVSTWLIEYGADPNT
YDGQ
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mRNA from alignment at H-elongata_contig54391:419..1609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54391.12814.1 ID=mRNA_H-elongata_contig54391.12814.1|Name=mRNA_H-elongata_contig54391.12814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1191bp|location=Sequence derived from alignment at H-elongata_contig54391:419..1609+ (Himanthalia elongata Himel1 dioecious)
GGGCGACTGTATTTCCAGGCAGGGGGCGAGAAGGATGTGCAGCGGTGGTT
GGTACCCTTGAGGGTGCTGGTCAAATTTTGTGACTTCGAGAACGACGGGC
GAACGTAAGACAGCGTTCCGTTTTTGCCTCACGGCATATTATACTTGATA
TAAAGTAGGCTGAGGTTTTCAAAATTACCTCTGGCGAAATAAAAATGGCT
CGTGATATCTACGCGTGCACCGTCACCGGTGGCGGGTAAAATATATTCGT
TTGTAGTCATGGGAAACCTCCCACGGAGGCCCTCCTTTAGTTCAACCGAG
TTTGATTGGCGATCTTCCCGGCTATTTTCGACGACTTTCTGAAATCTCAA
GATTACGTTTGATGGACGTGTGGTAAGATATGGGGGCCCTCGTTTTCCAC
CACGTAAGTTGTTGTTCGGATTTTCTTTCTAACATCGAACACTACGCAGT
TCGAAGGTCAATCGCCGCACTATTGACGTGGATAATTATGTTCCGATCGG
CCGAGATGGCAGGTTGCCCAAGGAATTCCTAGACCTTGCGATACGTCGTC
GATTGGTGCGGGCTCAGAATCACCGCGGTCAAACGCCCCTTCATCTTGCG
GCAGCTTTTACGGGGAGCGAAGCTAGCGTCATCGGAGCAAGCGAAGTAGT
CGAAGCCATTCAGGTACAAACCAAATTTCGAGAACCGCCCGTAGATATAC
ACAAGCGTATTTCGTAACGACGTGAACGTTTTAAGCCGTTTGAACTTTTG
GGAAGCTTTCCGCGGCGAGAAAAACCACGCGTGGCATAGAAACGTTCCCT
TGATACATACATATATATTTTTTCCCACCAGAGGGAAGTATCGACCGATT
TTGTCTCGAGCTTCGCGTGTCGCGAGTTAGGTAAAAATGCGACAGATATC
GCGCCTCAAATCGCGCTTAACGCTGTTTCAGTGATATACCCTCCCGTCCC
ATCCCCAACTCCCTCCCCATATTGCCAGCTCTTCCACGGTACGATTTAAT
GTGGTACAATGTCGTCTTGCCAGCAATCGTACTAAACCCTGACTTCAATC
CCGCGTCGTTGTGTGGACGAATTTGCTGCACGATCCCTACTTCCCTCGCG
CATCTTTCTCGACCTGCTCAAATGGATGAAAGCGAGTTTCCACCTGGCTG
ATTGAGTACGGCGCGGACCCAAACACTTACGATGGTCAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig54391:419..1609+

>mRNA_H-elongata_contig54391.12814.1 ID=mRNA_H-elongata_contig54391.12814.1|Name=mRNA_H-elongata_contig54391.12814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig54391:419..1609+ (Himanthalia elongata Himel1 dioecious)
GGGCGACTGTATTTCCAGGCAGGGGGCGAGAAGGATGTGCAGCGGTGGTT
GGTACCCTTGAGGGTGCTGGTCAAATTTTGTGACTTCGAGAACGACGGGC
GAACGGGCGACTGTATTTCCAGGCAGGGGGCGAGAAGGATGTGCAGCGGT
GGTTGGTACCCTTGAGGGTGCTGGTCAAATTTTGTGACTTCGAGAACGAC
GGGCGAACGTTGCCCAAGGAATTCCTAGACCTTGCGATACGTCGTCGATT
GGTGCGGGCTCAGAATCACCGCGGTCAAACGCCCCTTCATCTTGCGGCAG
CTTTTACGGGGAGCGAAGCTAGCGTCATCGGAGCAAGCGAAGTAGTCGAA
GCCATTCAGGTTGCCCAAGGAATTCCTAGACCTTGCGATACGTCGTCGAT
TGGTGCGGGCTCAGAATCACCGCGGTCAAACGCCCCTTCATCTTGCGGCA
GCTTTTACGGGGAGCGAAGCTAGCGTCATCGGAGCAAGCGAAGTAGTCGA
AGCCATTCAGCGAGTTTCCACCTGGCTGATTGAGTACGGCGCGGACCCAA
ACACTTACGATGGTCAGCGAGTTTCCACCTGGCTGATTGAGTACGGCGCG
GACCCAAACACTTACGATGGTCAG
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