mRNA_H-elongata_contig54391.12815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54391.12815.1
Unique NamemRNA_H-elongata_contig54391.12815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54391.12815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54391contigH-elongata_contig54391:1515..2001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size264
Cds size159
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54391.12815.1prot_H-elongata_contig54391.12815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54391 1620..2001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.9538918-UTR-H-elongata_contig54391:1514..16191622930885.9538918-UTR-H-elongata_contig54391:1514..1619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54391 1515..1619 +
1691679611.7134175-UTR-H-elongata_contig54391:1514..16191691679611.7134175-UTR-H-elongata_contig54391:1514..1619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54391 1515..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.9696887-CDS-H-elongata_contig54391:1619..17541622930885.9696887-CDS-H-elongata_contig54391:1619..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1620..1754 +
1691679611.7232542-CDS-H-elongata_contig54391:1619..17541691679611.7232542-CDS-H-elongata_contig54391:1619..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1620..1754 +
1622930885.9883687-CDS-H-elongata_contig54391:1977..20011622930885.9883687-CDS-H-elongata_contig54391:1977..2001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1978..2001 +
1691679611.7308466-CDS-H-elongata_contig54391:1977..20011691679611.7308466-CDS-H-elongata_contig54391:1977..2001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54391 1978..2001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54391.12815.1

>prot_H-elongata_contig54391.12815.1 ID=prot_H-elongata_contig54391.12815.1|Name=mRNA_H-elongata_contig54391.12815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MHYAAAAAQPAVLKEFENRGGDRHLERGSDGKTAADLLLPPQKMELERRT
CDI
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mRNA from alignment at H-elongata_contig54391:1515..2001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54391.12815.1 ID=mRNA_H-elongata_contig54391.12815.1|Name=mRNA_H-elongata_contig54391.12815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at H-elongata_contig54391:1515..2001+ (Himanthalia elongata Himel1 dioecious)
CGCGCATCTTTCTCGACCTGCTCAAATGGATGAAAGCGAGTTTCCACCTG
GCTGATTGAGTACGGCGCGGACCCAAACACTTACGATGGTCAGGGGGAAA
CCTCTATGCACTACGCGGCGGCGGCGGCACAGCCTGCGGTTTTGAAGGAA
TTCGAGAATAGAGGCGGTGATCGCCACCTGGAGAGAGGGTCGGACGGGAA
GACCGCAGCTGATCTGCTTCTGCCTCCTCAAAAGATGGAGGTTCGGGTCA
CTATTCGCGGGCGCCCAGACTGTCGTATATATGGATGGACAGATTAACAG
ACGTGCGAGAACAACCGTTTCTGAATGCTTCATGAATTGTAAGGCGTTCT
ACTCTCAAACCTCTTGTGTCGTCCTTTATTTATGTGCGTCAACTAACGAA
TTGTATCTTCCGTGCTCTCCATCCCATTCAATCATGCCTCCATGAATCAA
ATCCTTACATCAGCTCGAGCGGCGGACTTGTGACATT
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Coding sequence (CDS) from alignment at H-elongata_contig54391:1515..2001+

>mRNA_H-elongata_contig54391.12815.1 ID=mRNA_H-elongata_contig54391.12815.1|Name=mRNA_H-elongata_contig54391.12815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig54391:1515..2001+ (Himanthalia elongata Himel1 dioecious)
ATGCACTACGCGGCGGCGGCGGCACAGCCTGCGGTTTTGAAGGAATTCGA
GAATAGAGGCGGTGATCGCCACCTGGAGAGAGGGTCGGACGGGAAGACCG
CAGCTGATCTGCTTCTGCCTCCTCAAAAGATGGAGATGCACTACGCGGCG
GCGGCGGCACAGCCTGCGGTTTTGAAGGAATTCGAGAATAGAGGCGGTGA
TCGCCACCTGGAGAGAGGGTCGGACGGGAAGACCGCAGCTGATCTGCTTC
TGCCTCCTCAAAAGATGGAGCTCGAGCGGCGGACTTGTGACATTCTCGAG
CGGCGGACTTGTGACATT
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