mRNA_H-elongata_contig54385.12812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54385.12812.1
Unique NamemRNA_H-elongata_contig54385.12812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 6.070e-30
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    1 SRAWILARVVGEKTPGRVELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATVANNTPRMDGNSKVL 246
            S AWILARVV  K  G+VELHDEDDAS VFEL  ++V HL D+SS++ K D+VLAVFPDTT+FYCATVA ++PRMDGN+KVL
Sbjct:  217 SGAWILARVVQHKGYGKVELHDEDDASHVFELPISQVRHLEDLSSDLGKHDKVLAVFPDTTIFYCATVAKDSPRMDGNTKVL 298
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A7S3XKW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKW5_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 1.830e-7
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    7 AWILARVVGEKTPGRV-ELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFY 192
            +WILARVV      +V  + DEDD +KV +L    VL L+D S+   K D VLA+FP+TT FY
Sbjct:  149 SWILARVVEFNVAKQVYTVQDEDDVTKVMDLDHNRVLRLNDGSTHFSKGDAVLAMFPETTSFY 211
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A6V2GR38_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GR38_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.630e-5
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    1 SRAWILARVVGEKT-PGRVELHDED-DASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATVANNTPRMDG 231
            S  WILA+V+      G  +L DED +++K+F L  ++V+ L  +   + + D + AV+PDTT FY ATVA    ++ G
Sbjct:  222 STDWILAKVISHDLGTGMYKLSDEDVESNKIFNLPESQVVVLGGVD-RLSRGDIIYAVYPDTTSFYQATVAQAPRKVSG 299
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BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Match: A0A835YJG3_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.980e-5
Identity = 31/68 (45.59%), Postives = 35/68 (51.47%), Query Frame = 1 
Query:    4 RAWILARVVGEKTPGR-VELHDEDDASKVFELQTAEVLHLHDISSEVHKDDRVLAVFPDTTMFYCATV 204
            +A ILARV          E  DEDD    F +Q   V+ L D S  + K    LAVFPDTT FY ATV
Sbjct:  206 QAMILARVDKYHADSEEYECTDEDDKDNTFVIQAQNVIRLADNSKGLDKGSECLAVFPDTTSFYRATV 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54385.12812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY84_ECTSI6.070e-3070.73SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A7S3XKW5_HETAK1.830e-749.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V2GR38_9STRA2.630e-537.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A835YJG3_9STRA4.980e-545.59SGF29 tudor-like domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54385contigH-elongata_contig54385:506..2815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.5e-25
Seed eggNOG ortholog2880.D7FY84
EggNOG OGs2CZEN@1,2SA0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP30, SGF29 and Winged helix-turn-helix DNA-binding domain protein
Ec32 orthologEc-24_003440.1
Exons3
Model size246
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54385.12812.1prot_H-elongata_contig54385.12812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54385 506..2815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.7085803-CDS-H-elongata_contig54385:505..5561622930885.7085803-CDS-H-elongata_contig54385:505..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 506..556 +
1691679611.5880017-CDS-H-elongata_contig54385:505..5561691679611.5880017-CDS-H-elongata_contig54385:505..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 506..556 +
1622930885.726316-CDS-H-elongata_contig54385:2173..22691622930885.726316-CDS-H-elongata_contig54385:2173..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 2174..2269 +
1691679611.6036508-CDS-H-elongata_contig54385:2173..22691691679611.6036508-CDS-H-elongata_contig54385:2173..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 2174..2269 +
1622930885.7429209-CDS-H-elongata_contig54385:2716..28151622930885.7429209-CDS-H-elongata_contig54385:2716..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 2717..2815 +
1691679611.6139636-CDS-H-elongata_contig54385:2716..28151691679611.6139636-CDS-H-elongata_contig54385:2716..2815Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54385 2717..2815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54385.12812.1

>prot_H-elongata_contig54385.12812.1 ID=prot_H-elongata_contig54385.12812.1|Name=mRNA_H-elongata_contig54385.12812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
SRAWILARVVGEKTPGRVELHDEDDASKVFELQTAEVLHLHDISSEVHKD
DRVLAVFPDTTMFYCATVANNTPRMDGNSKVL
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mRNA from alignment at H-elongata_contig54385:506..2815+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54385.12812.1 ID=mRNA_H-elongata_contig54385.12812.1|Name=mRNA_H-elongata_contig54385.12812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2310bp|location=Sequence derived from alignment at H-elongata_contig54385:506..2815+ (Himanthalia elongata Himel1 dioecious)
TCCCGGGCCTGGATCCTCGCGCGCGTGGTGGGCGAGAAGACACCTGGACG
GGTAAGAGTCGATTTCCCCGGGGTTTCCATATTTTCTGAATAATTTATTA
TTGTTTTTTGCGATTTCCAAATTTTGGTTTTGATTTCTGGAAAATATTCA
CCCGAGAGCGCTGAACCGGAACATAAACAAAGATTTGCCAAATATCCAAA
TCCAAATGTGGCCAGCTCGATGTTCGGCGTGGTGGTCCCGTGCAGTGTGT
GATGTCGTATGCTCGGAAGCCAACACCCGTTTGACTTTTTGAAATATCAT
GAAAAATCTCGGAATAAGCGGAGATGCGTAGTAATCCAAAGACGTTCTTG
CTCTTGAACGACGTTACCGGCTCTCCAATCAAATTTCGGTTTTCGGTTTT
CGTTTCGTTTCGAAACCCAAATCCAAACATAATTTTGAATCGCAAACACT
GTATTATTTGTTATTTGTCGCAGGACCATGAAATTTGCTAATTATTATAC
GTATATAAGTGGGTACTGTTTTAAGCATATAATTCTGTTTTTTAGGCTAT
TACTTGGGATAAGTGTTATTGGGTTCGGTGTATTCAGTGCTTTGCTGATT
TACTGATGAGGATGAGGTGTTAAAGAAGGTTGGAAGAAAAATCAGCTAAA
TTCCTTTGGCTCATTATGTACCTTATGGTGTTCTGACCCTGATATCATAT
CGTGATCCTGATAGAGATATTACCTTCTCCCTCTTGGGTATCTATACTAA
CTTCAGTATAAGATGATGTTACATTCTCCCTCTTGGGTCTTTATACTAAC
TTCAGTATAATTAATAGATCCTGATGGTGATATTACTTTCTCCCTCTTAG
GTCTATATACTAACTTCAGTATAATAATAGATCCTGATGGCGATATTACC
TTCTCCCTCTTGGTTCTCAAAGGTAGTAATTGACACATTCGAACCTCACG
ATAGTTAGACCCCTGGAGTGCACCTCTCACGGCGCTAAGAAGGTGTGGAT
GTTCGGAGGGTTGGAATGATAACACGAATCTTTCCAGAAATGGTATACGT
TACAGTATTGATTTCGCACGGCCTTAAGGAGGGCGCTCCAAGAGACTCAA
GATAGTACGGTAGCCGAAATGTCTTGTGTTTTAAGGTTGTTACTGCTGAC
CAACGTGTACTCTCAACATTACTCGAGAGCACGAACAATACTGTTCCTGT
GTAGGGTCTACGGCGCAACGGAGCGAAGGACTCAGCGCACTGTAAGGCTA
TTATGAAGTATAATAGCTATTAATCGTATAGTATAGTAGAAACTTTTACG
GTTGGGGCGAGTGTATTCTAGGTGTGTGTGTGTGTGTGTGTGTATTTATT
AAATTGCACATAACCGCGCAATCCGGCTTTGTCATGCTAGCTCTTCTAGG
CTATTAATATTATTAATAAATAATAATGCAACTAACCCACCTGGAGGGGG
GGGGTTATATAATTGTTATGTGTCCTTCGATACTGCGCGGCTCTCTCGTT
CGAGTCTTGACCGCATCGTGGTGGGCAACCATTAAAGTTGGTGCGTAACA
AAAAAAAAGGGCCGTATTTGGGCGTAATAGCGATAACTAAAGTGCACCAC
TACACTAAAGATAGGACGTTAACCACGTCGGAATAACGTAATAGATCCCT
TGTGTACGAAAACTGCAGGTGGAGCTGCACGACGAGGACGACGCCTCCAA
GGTCTTTGAACTCCAAACCGCGGAGGTCCTACACCTCCACGACATCTCTT
CCGAAGTCCACAAGGTTAGGGGAAAACATAAAAACAAGCAACAATAGAAC
GCCTTCTCCTCCCCCCATCCCCCCCTTTTTTGGGAGGGGGGAGGGAGGGG
GGCAGGCGAGACGACTTATTTATTTTTGTTCGTATTTTCCTTGTTCCTTA
GGTCGGAGGAGGAGTTAGACGGAGACGCGCAAACACACACATTACTCTTT
CCTCTGATTCTATTTTACACTTTTCCGCCGGGGTGCACGCGCTGCGATAA
AGTTCTGCCCGACGCGGTTGCTTTCCGTTTTTTATCCTTATCCTGGTTTA
TGTGTTGTAACATATACATCCCACCCTGTTTTATGATACTTCTCATGTGG
CGCTGTGCTCTAATAATGCAGCGCTAAACAAGCGAAATGTTTAGCAATTT
TTATTAACCTATTCGTTGCGCCACGCGAAATCATAACCGTGTACACGCTT
GAATTTACCAGGATGACAGGGTGTTGGCGGTGTTCCCAGACACGACCATG
TTTTACTGCGCCACCGTGGCGAACAACACGCCTCGCATGGATGGGAACTC
CAAGGTACTG
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Coding sequence (CDS) from alignment at H-elongata_contig54385:506..2815+

>mRNA_H-elongata_contig54385.12812.1 ID=mRNA_H-elongata_contig54385.12812.1|Name=mRNA_H-elongata_contig54385.12812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig54385:506..2815+ (Himanthalia elongata Himel1 dioecious)
TCCCGGGCCTGGATCCTCGCGCGCGTGGTGGGCGAGAAGACACCTGGACG
GTCCCGGGCCTGGATCCTCGCGCGCGTGGTGGGCGAGAAGACACCTGGAC
GGGTGGAGCTGCACGACGAGGACGACGCCTCCAAGGTCTTTGAACTCCAA
ACCGCGGAGGTCCTACACCTCCACGACATCTCTTCCGAAGTCCACAAGGT
GGAGCTGCACGACGAGGACGACGCCTCCAAGGTCTTTGAACTCCAAACCG
CGGAGGTCCTACACCTCCACGACATCTCTTCCGAAGTCCACAAGGATGAC
AGGGTGTTGGCGGTGTTCCCAGACACGACCATGTTTTACTGCGCCACCGT
GGCGAACAACACGCCTCGCATGGATGGGAACTCCAAGGTACTGGATGACA
GGGTGTTGGCGGTGTTCCCAGACACGACCATGTTTTACTGCGCCACCGTG
GCGAACAACACGCCTCGCATGGATGGGAACTCCAAGGTACTG
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