mRNA_H-elongata_contig54363.12807.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54363.12807.1
Unique NamemRNA_H-elongata_contig54363.12807.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: D7FV31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV31_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.270e-79
Identity = 160/366 (43.72%), Postives = 182/366 (49.73%), Query Frame = 1
Query:    1 RYEDLVGD---ADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELG----------------------RRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPG----------------------------------------------------------------------------VVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
            RYEDLV D    DL  VAERAFG +GLGIVVVT VPD+  +RR L  LG                      +RFA LP+ET+ RYEHP SSFSFGWSHGKE+LE GRPDLAKGSFYANPCFDAPF  D G                                                                            +V ++ SFAHPNVWPD +V  FS AFK LG+AVVRVG LVARQCDRYV+ VH GY++GK+ RIVSTSRC KGR L+YFPRS                                     DG  +G   E        DD +FSDWCGWH+DHS+LTG+V A
Sbjct:    7 RYEDLVRDDEAGDLHAVAERAFGHQGLGIVVVTGVPDVAGARRELFALGHKPLTSHPYKAGTEHAGFSPDQKRFAALPEETKVRYEHPQSSFSFGWSHGKESLETGRPDLAKGSFYANPCFDAPFGGDGGXXXXXXXXXXXXXXXXXXXXXXXXXVDCRSPDHLLHRPENGNDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALVEKYPSFAHPNVWPDADVAGFSAAFKALGRAVVRVGGLVARQCDRYVATVHPGYDKGKMSRIVSTSRCPKGRLLYYFPRSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDDMGGSGE-------GDDRAFSDWCGWHNDHSALTGLVPA 365          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2G9H5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G9H5_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.890e-65
Identity = 113/264 (42.80%), Postives = 147/264 (55.68%), Query Frame = 1
Query:    4 YEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
            Y+DL    DLT   E AF  +GLGI+ V+ +P +   R  L+ L RRFA LP E +  +EHP S ++FGWSHG+E L+ G+PDLAKGS+YANP +D P  DD  ++ ++ +F HPN+WP EEVPE   AFK LGQ +V VG+LVA+QCD ++      YE GKL   ++TS CCK R LHYF  S  +  +R                                                 D +FSDWCGWH+DH SLTG+V A
Sbjct:   39 YKDLKSGVDLTSQIEEAFSSDGLGILTVSDIPHLSVCRSRLLPLARRFAMLPGEVKESFEHPESFYAFGWSHGREKLQ-GKPDLAKGSYYANPQYDRP-VDDESLIQQYPAFIHPNIWPTEEVPELEDAFKALGQLIVHVGLLVAQQCDAFIESRCSTYENGKLHEAIATSLCCKARLLHYFAMSSTDLLKRS-----------------------------------------------QDTAFSDWCGWHNDHGSLTGLVPA 253          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A835Z9V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V9_9STRA)

HSP 1 Score: 218 bits (554), Expect = 2.050e-65
Identity = 117/265 (44.15%), Postives = 148/265 (55.85%), Query Frame = 1
Query:    1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
            +Y DL   ADL    E+A+G EGLGI+ VT VP++   R  L+ L +  A LP E +A  EHPSSS+ FGWS GKE L +G PD +KGS+YANP +D P  DD   + +  +  HPN+WP + +P+   AFK LGQ V+ VG+LVARQCD Y +R   GY  G LER+V+ SRC KGR LHYFP      +   G +   + A+         P   G                          SFSDWCGWH DH SLTG+V A
Sbjct:   18 KYTDLQSGADLCSAIEQAYGNEGLGILAVTGVPNLQVLRAKLLPLAKTLAELPAEVQAELEHPSSSYMFGWSLGKERLSSGTPDFSKGSYYANPVYDRP-VDDESQIAQFPASIHPNIWPTKHLPDLEPAFKVLGQLVIAVGVLVARQCDAYAARARPGYSGG-LERMVAASRCAKGRLLHYFPLGEGRGSDNGGSA--QRAATXXXXXXXXSPPLEG-------------------------ASFSDWCGWHLDHGSLTGLVPA 253          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S4EZ27_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ27_CHRCT)

HSP 1 Score: 214 bits (545), Expect = 1.570e-64
Identity = 114/265 (43.02%), Postives = 150/265 (56.60%), Query Frame = 1
Query:    1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
            +YEDL+  +DLT   ERAFG +G+GI+ V  VP I D+R  L+ L  RFA LP++T+A+YEH  S ++ GWS G+E L+ GRPD++KGS+YANP  D PF DD   +  H +FA PN+WP EE+P    AF E GQ + RVG LVA QCD +V      Y   +L+ ++ TSRCCKGR LHYFP   ++ A R   +      S  A                                   D  FS+WCGWH+DH SLT ++ A
Sbjct:   18 QYEDLLAGSDLTAEIERAFGYDGMGILTVAGVPGISDARDRLLPLAHRFAMLPEKTKAKYEHAGSFYAVGWSFGREKLQ-GRPDVSKGSYYANPLQDKPF-DDAATIAAHPAFAEPNIWPSEELPALRGAFMEAGQLMHRVGCLVAAQCDAFVRARCDAYPADRLQHVIKTSRCCKGRLLHYFP---IDTAGRECAASHEASDSAAAQST--------------------------------DDEFSNWCGWHNDHGSLTALLPA 245          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: K8Z5X4_NANGC (DIOX_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z5X4_NANGC)

HSP 1 Score: 214 bits (544), Expect = 4.310e-64
Identity = 112/257 (43.58%), Postives = 148/257 (57.59%), Query Frame = 1
Query:   28 DLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHG-VGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
            DL+   E+AFG  G+G++ V+ VP + + RR+++ L   FA+LP   RA+YEH  SS+SFGWSHGKE L+ GRPDL KGS+YANP  D P +D   ++ ++ +F HPN+WP  ++P    AFK++G  +V VG LVARQCD YVSR+   Y   +LE+IV  SR CK R LHYFP           +    KG  G A G  GT   + G                            S+WCGWH+DH SLTG+ SA
Sbjct:    6 DLSREIEKAFGEHGMGLLTVSGVPGLSEKRRSILHLAYAFASLPSTVRAKYEHSLSSYSFGWSHGKECLQEGRPDLLKGSYYANPLHDTPCSDQ-NLIEKYPAFLHPNIWPTADLPALEPAFKDMGGLIVEVGALVARQCDSYVSRMCPAYPPNRLEKIVRESRVCKARLLHYFP-----------IIPEGKGPDGAARGWEGTGEAWAGA---------------------------SEWCGWHNDHGSLTGLTSA 223          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A8J6C695_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C695_DIALT)

HSP 1 Score: 209 bits (531), Expect = 4.350e-62
Identity = 117/264 (44.32%), Postives = 149/264 (56.44%), Query Frame = 1
Query:    4 YEDLVGDADLTDVAERAFGR-EGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVS 792
            +E L+   DL+     AFG  E LGI+ V+ VP +   R  L+ L R FA LP + RA +EH  S ++ GWSHGKE L  G PDLAKGS+Y NP ++ PF DD  ++ R  SFA PNVWP + VP+   AF +LGQ +VR G+LVA+QCD YVS     YE GKLER++S+S+ CKGR LHYF       A  PG + G  GA   A G                               D +G +S WCGWH+DH SLT +V+
Sbjct:   14 FEALLRGDDLSARIAEAFGADESLGILTVSGVPGLTPLRERLLPLAREFARLPADVRAAHEHAPSFYAVGWSHGKEKLGGGAPDLAKGSYYNNPLYNRPF-DDEALIARFPSFAAPNVWPSQHVPQMEGAFMQLGQVMVRTGLLVAKQCDAYVSARCPAYEAGKLERLLSSSKVCKGRLLHYF-------ATAPGHAPGEGGAPAAAPGA------------------------------DVEGEWSSWCGWHNDHGSLTALVA 239          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S4BCQ1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCQ1_CHRCT)

HSP 1 Score: 199 bits (506), Expect = 7.430e-60
Identity = 96/184 (52.17%), Postives = 125/184 (67.93%), Query Frame = 1
Query:    1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFP 552
            +YEDL+  +DLT   ERAFG +G+GI+ V  VP I D+R  L+ L  RFA LP++T+A+YEH  S ++ GWS G+E L+ GRPD++KGS+YANP  D PF DD   +  H +FA PN+WP EE+P    AF E GQ + RVG LVA QCD +V      Y   +L+ ++ TSRCCKGR LHYFP
Sbjct:   18 QYEDLLAGSDLTAEIERAFGYDGMGILTVAGVPGISDARDRLLPLAHRFAMLPEKTKAKYEHAGSFYAVGWSFGREKLQ-GRPDVSKGSYYANPLQDKPF-DDAATIAAHPAFAEPNIWPSEELPALRGAFMEAGQLMHRVGCLVAAQCDAFVRARCDAYPADRLQHVIKTSRCCKGRLLHYFP 199          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A6H5JFZ5_9PHAE (DIOX_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.570e-58
Identity = 112/225 (49.78%), Postives = 124/225 (55.11%), Query Frame = 1
Query:    1 RYEDLVGD---ADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPG-----------------------------------------------------------------------VVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDR 453
            RYEDLV D    DL  VAERAFG +GLGIVVVT VPD+  +RR L  LG +FA LP+ET+ARYEHP S FSFGWSHGKE+LE G PDLAKGSFYANPCFDAPF  D G                                                                       +V ++ SFAHPNVWPD +VP FS AFK LG+AVVRVG LVARQCDR
Sbjct:    9 RYEDLVRDDEAGDLHAVAERAFGHQGLGIVVVTGVPDVAGARRELFALGHKFAALPEETKARYEHPQSCFSFGWSHGKESLETGGPDLAKGSFYANPCFDAPFGGDGGXXXXXXXXXXAGSGEDGGVEGRGPDRLLHRPEKGDHCGGNNAGEEGXXXXXXXXXXXXXXXXXXXXXXXXALVEKYPSFAHPNVWPDADVPGFSAAFKALGRAVVRVGGLVARQCDR 233          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2QT45_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QT45_9EUKA)

HSP 1 Score: 198 bits (504), Expect = 5.790e-58
Identity = 104/262 (39.69%), Postives = 146/262 (55.73%), Query Frame = 1
Query:    4 YEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVV 789
            YE+L    DL  + E+AFG  GLGI+ +  + ++G  R  +   G +FA + +  +A+YEH  S + FGWSHGKE L+ G PD +KGSFY NP  + PF +DPG+V +  +FA PN+WP +EVP     F  +G+ VV+VG +VA QCD++VS   + YE+ +L R++ST++ CK R LHYFP        R G                                  +E E     + D    FS+WCGWH+DHSSLTG+V
Sbjct:   14 YEELKSGKDLCQIVEKAFGYNGLGIIGIYGIEEVGKLREAVFRDGFKFATMDEHVKAKYEHKDSYYGFGWSHGKENLQ-GYPDYSKGSFYNNPLVNKPF-EDPGMVDKLPAFASPNLWPSQEVPSLEKNFMNMGKLVVKVGTMVAAQCDKFVSSKCKTYEKNRLYRMISTNKVCKARLLHYFPIEEKNQHSREGKQ--------------------------------SEDEKSSKKMQD---PFSNWCGWHNDHSSLTGLV 238          
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2SF68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SF68_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.150e-57
Identity = 92/174 (52.87%), Postives = 121/174 (69.54%), Query Frame = 1
Query:   28 DLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYF 549
            DL+D   RA+  +GLGI+ V+ +P + + R  L+ L +RFA LP+ T+A+YEHP S +SFGWSHGKE L+ G+PDLAKGSFYANP +D P  DD  ++ +   F HPN+WP E+VPE   AFK +G+ VV VG LVA QCD +V +    Y E KL +I+ +S CCK R LHYF
Sbjct:   55 DLSDAVARAYSYDGLGILTVSNIPGLEERRAALLPLAKRFAELPETTKAKYEHPESFYSFGWSHGKEKLQ-GKPDLAKGSFYANPQYDRP-VDDEALIQQFTPFIHPNIWPTEDVPELEGAFKRMGELVVEVGALVALQCDAFVRKEIPSYPEHKLHKIIKSSLCCKARLLHYF 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV31_ECTSI3.270e-7943.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2G9H5_9STRA1.890e-6542.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z9V9_9STRA2.050e-6544.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4EZ27_CHRCT1.570e-6443.02Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
K8Z5X4_NANGC4.310e-6443.58DIOX_N domain-containing protein n=3 Tax=Monodopsi... [more]
A0A8J6C695_DIALT4.350e-6244.32Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S4BCQ1_CHRCT7.430e-6052.17Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6H5JFZ5_9PHAE1.570e-5849.78DIOX_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2QT45_9EUKA5.790e-5839.69Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A7S2SF68_9STRA4.150e-5752.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54363contigH-elongata_contig54363:1795..3724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue7.1e-67
Seed eggNOG ortholog2880.D7FV31
EggNOG OGs28J4J@1,2QRGK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-12_004950.1
Exons4
Model size795
Cds size795
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54363.12807.1prot_H-elongata_contig54363.12807.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54363 1795..3724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.1276062-CDS-H-elongata_contig54363:1794..19371622930885.1276062-CDS-H-elongata_contig54363:1794..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 1795..1937 +
1691679611.4098523-CDS-H-elongata_contig54363:1794..19371691679611.4098523-CDS-H-elongata_contig54363:1794..1937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 1795..1937 +
1622930885.1467454-CDS-H-elongata_contig54363:2473..27821622930885.1467454-CDS-H-elongata_contig54363:2473..2782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 2474..2782 +
1691679611.4192479-CDS-H-elongata_contig54363:2473..27821691679611.4192479-CDS-H-elongata_contig54363:2473..2782Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 2474..2782 +
1622930885.1697829-CDS-H-elongata_contig54363:3255..34491622930885.1697829-CDS-H-elongata_contig54363:3255..3449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 3256..3449 +
1691679611.427504-CDS-H-elongata_contig54363:3255..34491691679611.427504-CDS-H-elongata_contig54363:3255..3449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 3256..3449 +
1622930885.196131-CDS-H-elongata_contig54363:3575..37241622930885.196131-CDS-H-elongata_contig54363:3575..3724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 3576..3724 +
1691679611.4361773-CDS-H-elongata_contig54363:3575..37241691679611.4361773-CDS-H-elongata_contig54363:3575..3724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54363 3576..3724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54363.12807.1

>prot_H-elongata_contig54363.12807.1 ID=prot_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFA
NLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPF
ADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCD
RYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGL
KGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWC
GWHHDHSSLTGVVSA
back to top

mRNA from alignment at H-elongata_contig54363:1795..3724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54363.12807.1 ID=mRNA_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1930bp|location=Sequence derived from alignment at H-elongata_contig54363:1795..3724+ (Himanthalia elongata Himel1 dioecious)
AGATACGAAGACCTCGTGGGCGACGCAGACCTTACGGATGTTGCGGAGAG GGCATTCGGCCGGGAAGGCCTCGGGATCGTTGTGGTGACCCGTGTACCGG ACATCGGCGACTCCAGGCGGAATCTGATGGAGCTAGGACGCAGGTACCTT TCTCGGCCAATATTCCAGTGGTGGCCACGAGCTCGTGTGCACCGGGAGTT GGAGACTAGTTTTCCCCTCCTGTTGCCCGCGACATCGGCGGTAGCTTCCG GTAATGTGCCCCTTGAGCTTAGTTATCGTACGATGTCACGTCCGAGGTGG GTGGAGGTGGAGGTTGAGGGATGGGGCGAGCTTCTCCAGCGACGAGCTTA ACATCATATATGTTTTCCTCTTACGGGTAGGAAATCGCGGGGCTTTTCCC CGAAATACTGTACGACACCCCCCTCTCGGCACAAACTTGACGCAGCGTGT TGTAGTGTGGCTGGCCGCGTAGCGCTTGACTTGACCTGACCTGACTTGAC CCGGTCGTTGTCGCGAGGAAGAGGAGGACATGTCAGCGAAGGACCGCCGG ATTGAGGCACTTGTAACTTTGGACTTCCGTCTCGAGTCTCCCGTCTCAGG AAACCCCCACGTCTCGAAGTAAAGTCATTTTCTTCCTTCGCCGCATTCGC CGCTGTCGCCCACGTCTCGCATCTAAAAGGTTCGCCAACCTCCCCCAGGA AACCCGTGCGCGATACGAACACCCATCCAGCAGCTTCTCCTTCGGGTGGA GCCACGGGAAGGAGACGCTGGAGGCGGGCCGGCCGGATCTTGCCAAGGGG TCATTCTATGCCAACCCCTGCTTCGACGCTCCCTTTGCAGACGACCCGGG CGTGGTGACACGTCACGTCTCTTTTGCCCACCCGAACGTCTGGCCCGACG AGGAGGTGCCGGAGTTTTCCGTGGCGTTCAAGGAACTTGGGCAGGCGGTC GTGCGGGTGGGAATCCTCGTGGCGCGTCAGTGTGACAGGTGAGACGATGT TGTTGGAGGACCCGGCTGTCTGGGGTTGCTTCGAGGCGGGGAGGGGGGGG CAAGCGGAGGATAATTTTGTCGTCGTGTGCGGTGAAGATGAAGGCAACGA TAAGGCAAGGTAATGCGTGGCTCGACGCGTCATTACACATGCACTACGAA GGGGGCCGTATTACTAGCAAGCTTTCCCCCCCTAAGCTTCGTGGGTTAAC GCTGACTGGCGCGGATAAGATTGTTTCTCCTACTTCCGACGCTTTCAAGT CTTACTAGGCTAACTGGTCAAGTCATCCGCTTTATTTTTTCCAGTCACTG CTGAATCACTGGCCTAATGGTCGCACACACACACCCTTCGCCTTCTATTT CCTGACCGAGTACTATTAAAATAGCGCGGGAGTTGATGGGTATGGAAGGC ATAACGCGCGCTTCTATGAGTCCAAGATAACGCGGTTTTGACCCCCTTTC ACCCTCGCCAGGTACGTCTCAAGAGTGCACCGTGGCTACGAAGAGGGCAA GCTCGAGCGTATCGTCTCCACATCGCGTTGTTGCAAGGGTCGCTTCCTCC ATTACTTCCCTCGTAGCTTCCTCGAGAACGCTCAGAGGCCAGGCGTGAGT GGTGGCCTTAAAGGGGCCAGCGGCCTGGCGCACGGCGTTGGGACACCTCC CACTTGTCTGGCGGTGGCAGAGACAGATATAAAAACAAGAAGAGATCGTG ATGATGGCCGTAAGGAACACGTCGATAAGCTGTGCAGGACGAGTGGTCGG GACGGTGACAGTAGCCGAGGTGAAATCGCAGTCAGAGGTGGTGCGGCGAT CGGGGACGGTATCGGGGTGGGGACGGAGACGGAGATCGGCATCTCTGACG TGGTCGACGATGACGGCTCTTTCTCAGACTGGTGCGGCTGGCACCACGAC CACAGCTCTCTCACAGGTGTGGTCTCTGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54363:1795..3724+

>mRNA_H-elongata_contig54363.12807.1 ID=mRNA_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig54363:1795..3724+ (Himanthalia elongata Himel1 dioecious)
AGATACGAAGACCTCGTGGGCGACGCAGACCTTACGGATGTTGCGGAGAG
GGCATTCGGCCGGGAAGGCCTCGGGATCGTTGTGGTGACCCGTGTACCGG
ACATCGGCGACTCCAGGCGGAATCTGATGGAGCTAGGACGCAGAGATACG
AAGACCTCGTGGGCGACGCAGACCTTACGGATGTTGCGGAGAGGGCATTC
GGCCGGGAAGGCCTCGGGATCGTTGTGGTGACCCGTGTACCGGACATCGG
CGACTCCAGGCGGAATCTGATGGAGCTAGGACGCAGGTTCGCCAACCTCC
CCCAGGAAACCCGTGCGCGATACGAACACCCATCCAGCAGCTTCTCCTTC
GGGTGGAGCCACGGGAAGGAGACGCTGGAGGCGGGCCGGCCGGATCTTGC
CAAGGGGTCATTCTATGCCAACCCCTGCTTCGACGCTCCCTTTGCAGACG
ACCCGGGCGTGGTGACACGTCACGTCTCTTTTGCCCACCCGAACGTCTGG
CCCGACGAGGAGGTGCCGGAGTTTTCCGTGGCGTTCAAGGAACTTGGGCA
GGCGGTCGTGCGGGTGGGAATCCTCGTGGCGCGTCAGTGTGACAGGTTCG
CCAACCTCCCCCAGGAAACCCGTGCGCGATACGAACACCCATCCAGCAGC
TTCTCCTTCGGGTGGAGCCACGGGAAGGAGACGCTGGAGGCGGGCCGGCC
GGATCTTGCCAAGGGGTCATTCTATGCCAACCCCTGCTTCGACGCTCCCT
TTGCAGACGACCCGGGCGTGGTGACACGTCACGTCTCTTTTGCCCACCCG
AACGTCTGGCCCGACGAGGAGGTGCCGGAGTTTTCCGTGGCGTTCAAGGA
ACTTGGGCAGGCGGTCGTGCGGGTGGGAATCCTCGTGGCGCGTCAGTGTG
ACAGGTACGTCTCAAGAGTGCACCGTGGCTACGAAGAGGGCAAGCTCGAG
CGTATCGTCTCCACATCGCGTTGTTGCAAGGGTCGCTTCCTCCATTACTT
CCCTCGTAGCTTCCTCGAGAACGCTCAGAGGCCAGGCGTGAGTGGTGGCC
TTAAAGGGGCCAGCGGCCTGGCGCACGGCGTTGGGACACCTCCCACTTGT
ACGTCTCAAGAGTGCACCGTGGCTACGAAGAGGGCAAGCTCGAGCGTATC
GTCTCCACATCGCGTTGTTGCAAGGGTCGCTTCCTCCATTACTTCCCTCG
TAGCTTCCTCGAGAACGCTCAGAGGCCAGGCGTGAGTGGTGGCCTTAAAG
GGGCCAGCGGCCTGGCGCACGGCGTTGGGACACCTCCCACTTTCAGAGGT
GGTGCGGCGATCGGGGACGGTATCGGGGTGGGGACGGAGACGGAGATCGG
CATCTCTGACGTGGTCGACGATGACGGCTCTTTCTCAGACTGGTGCGGCT
GGCACCACGACCACAGCTCTCTCACAGGTGTGGTCTCTGCTTCAGAGGTG
GTGCGGCGATCGGGGACGGTATCGGGGTGGGGACGGAGACGGAGATCGGC
ATCTCTGACGTGGTCGACGATGACGGCTCTTTCTCAGACTGGTGCGGCTG
GCACCACGACCACAGCTCTCTCACAGGTGTGGTCTCTGCT
back to top