mRNA_H-elongata_contig54363.12807.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: D7FV31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV31_ECTSI) HSP 1 Score: 256 bits (655), Expect = 3.270e-79 Identity = 160/366 (43.72%), Postives = 182/366 (49.73%), Query Frame = 1
Query: 1 RYEDLVGD---ADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELG----------------------RRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPG----------------------------------------------------------------------------VVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
RYEDLV D DL VAERAFG +GLGIVVVT VPD+ +RR L LG +RFA LP+ET+ RYEHP SSFSFGWSHGKE+LE GRPDLAKGSFYANPCFDAPF D G +V ++ SFAHPNVWPD +V FS AFK LG+AVVRVG LVARQCDRYV+ VH GY++GK+ RIVSTSRC KGR L+YFPRS DG +G E DD +FSDWCGWH+DHS+LTG+V A
Sbjct: 7 RYEDLVRDDEAGDLHAVAERAFGHQGLGIVVVTGVPDVAGARRELFALGHKPLTSHPYKAGTEHAGFSPDQKRFAALPEETKVRYEHPQSSFSFGWSHGKESLETGRPDLAKGSFYANPCFDAPFGGDGGXXXXXXXXXXXXXXXXXXXXXXXXXVDCRSPDHLLHRPENGNDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALVEKYPSFAHPNVWPDADVAGFSAAFKALGRAVVRVGGLVARQCDRYVATVHPGYDKGKMSRIVSTSRCPKGRLLYYFPRSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDDMGGSGE-------GDDRAFSDWCGWHNDHSALTGLVPA 365
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2G9H5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G9H5_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.890e-65 Identity = 113/264 (42.80%), Postives = 147/264 (55.68%), Query Frame = 1
Query: 4 YEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
Y+DL DLT E AF +GLGI+ V+ +P + R L+ L RRFA LP E + +EHP S ++FGWSHG+E L+ G+PDLAKGS+YANP +D P DD ++ ++ +F HPN+WP EEVPE AFK LGQ +V VG+LVA+QCD ++ YE GKL ++TS CCK R LHYF S + +R D +FSDWCGWH+DH SLTG+V A
Sbjct: 39 YKDLKSGVDLTSQIEEAFSSDGLGILTVSDIPHLSVCRSRLLPLARRFAMLPGEVKESFEHPESFYAFGWSHGREKLQ-GKPDLAKGSYYANPQYDRP-VDDESLIQQYPAFIHPNIWPTEEVPELEDAFKALGQLIVHVGLLVAQQCDAFIESRCSTYENGKLHEAIATSLCCKARLLHYFAMSSTDLLKRS-----------------------------------------------QDTAFSDWCGWHNDHGSLTGLVPA 253
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A835Z9V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V9_9STRA) HSP 1 Score: 218 bits (554), Expect = 2.050e-65 Identity = 117/265 (44.15%), Postives = 148/265 (55.85%), Query Frame = 1
Query: 1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
+Y DL ADL E+A+G EGLGI+ VT VP++ R L+ L + A LP E +A EHPSSS+ FGWS GKE L +G PD +KGS+YANP +D P DD + + + HPN+WP + +P+ AFK LGQ V+ VG+LVARQCD Y +R GY G LER+V+ SRC KGR LHYFP + G + + A+ P G SFSDWCGWH DH SLTG+V A
Sbjct: 18 KYTDLQSGADLCSAIEQAYGNEGLGILAVTGVPNLQVLRAKLLPLAKTLAELPAEVQAELEHPSSSYMFGWSLGKERLSSGTPDFSKGSYYANPVYDRP-VDDESQIAQFPASIHPNIWPTKHLPDLEPAFKVLGQLVIAVGVLVARQCDAYAARARPGYSGG-LERMVAASRCAKGRLLHYFPLGEGRGSDNGGSA--QRAATXXXXXXXXSPPLEG-------------------------ASFSDWCGWHLDHGSLTGLVPA 253
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S4EZ27_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EZ27_CHRCT) HSP 1 Score: 214 bits (545), Expect = 1.570e-64 Identity = 114/265 (43.02%), Postives = 150/265 (56.60%), Query Frame = 1
Query: 1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
+YEDL+ +DLT ERAFG +G+GI+ V VP I D+R L+ L RFA LP++T+A+YEH S ++ GWS G+E L+ GRPD++KGS+YANP D PF DD + H +FA PN+WP EE+P AF E GQ + RVG LVA QCD +V Y +L+ ++ TSRCCKGR LHYFP ++ A R + S A D FS+WCGWH+DH SLT ++ A
Sbjct: 18 QYEDLLAGSDLTAEIERAFGYDGMGILTVAGVPGISDARDRLLPLAHRFAMLPEKTKAKYEHAGSFYAVGWSFGREKLQ-GRPDVSKGSYYANPLQDKPF-DDAATIAAHPAFAEPNIWPSEELPALRGAFMEAGQLMHRVGCLVAAQCDAFVRARCDAYPADRLQHVIKTSRCCKGRLLHYFP---IDTAGRECAASHEASDSAAAQST--------------------------------DDEFSNWCGWHNDHGSLTALLPA 245
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: K8Z5X4_NANGC (DIOX_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z5X4_NANGC) HSP 1 Score: 214 bits (544), Expect = 4.310e-64 Identity = 112/257 (43.58%), Postives = 148/257 (57.59%), Query Frame = 1
Query: 28 DLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHG-VGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVSA 795
DL+ E+AFG G+G++ V+ VP + + RR+++ L FA+LP RA+YEH SS+SFGWSHGKE L+ GRPDL KGS+YANP D P +D ++ ++ +F HPN+WP ++P AFK++G +V VG LVARQCD YVSR+ Y +LE+IV SR CK R LHYFP + KG G A G GT + G S+WCGWH+DH SLTG+ SA
Sbjct: 6 DLSREIEKAFGEHGMGLLTVSGVPGLSEKRRSILHLAYAFASLPSTVRAKYEHSLSSYSFGWSHGKECLQEGRPDLLKGSYYANPLHDTPCSDQ-NLIEKYPAFLHPNIWPTADLPALEPAFKDMGGLIVEVGALVARQCDSYVSRMCPAYPPNRLEKIVRESRVCKARLLHYFP-----------IIPEGKGPDGAARGWEGTGEAWAGA---------------------------SEWCGWHNDHGSLTGLTSA 223
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A8J6C695_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C695_DIALT) HSP 1 Score: 209 bits (531), Expect = 4.350e-62 Identity = 117/264 (44.32%), Postives = 149/264 (56.44%), Query Frame = 1
Query: 4 YEDLVGDADLTDVAERAFGR-EGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVVS 792
+E L+ DL+ AFG E LGI+ V+ VP + R L+ L R FA LP + RA +EH S ++ GWSHGKE L G PDLAKGS+Y NP ++ PF DD ++ R SFA PNVWP + VP+ AF +LGQ +VR G+LVA+QCD YVS YE GKLER++S+S+ CKGR LHYF A PG + G GA A G D +G +S WCGWH+DH SLT +V+
Sbjct: 14 FEALLRGDDLSARIAEAFGADESLGILTVSGVPGLTPLRERLLPLAREFARLPADVRAAHEHAPSFYAVGWSHGKEKLGGGAPDLAKGSYYNNPLYNRPF-DDEALIARFPSFAAPNVWPSQHVPQMEGAFMQLGQVMVRTGLLVAKQCDAYVSARCPAYEAGKLERLLSSSKVCKGRLLHYF-------ATAPGHAPGEGGAPAAAPGA------------------------------DVEGEWSSWCGWHNDHGSLTALVA 239
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S4BCQ1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCQ1_CHRCT) HSP 1 Score: 199 bits (506), Expect = 7.430e-60 Identity = 96/184 (52.17%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 1 RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFP 552
+YEDL+ +DLT ERAFG +G+GI+ V VP I D+R L+ L RFA LP++T+A+YEH S ++ GWS G+E L+ GRPD++KGS+YANP D PF DD + H +FA PN+WP EE+P AF E GQ + RVG LVA QCD +V Y +L+ ++ TSRCCKGR LHYFP
Sbjct: 18 QYEDLLAGSDLTAEIERAFGYDGMGILTVAGVPGISDARDRLLPLAHRFAMLPEKTKAKYEHAGSFYAVGWSFGREKLQ-GRPDVSKGSYYANPLQDKPF-DDAATIAAHPAFAEPNIWPSEELPALRGAFMEAGQLMHRVGCLVAAQCDAFVRARCDAYPADRLQHVIKTSRCCKGRLLHYFP 199
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A6H5JFZ5_9PHAE (DIOX_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ5_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.570e-58 Identity = 112/225 (49.78%), Postives = 124/225 (55.11%), Query Frame = 1
Query: 1 RYEDLVGD---ADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPG-----------------------------------------------------------------------VVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDR 453
RYEDLV D DL VAERAFG +GLGIVVVT VPD+ +RR L LG +FA LP+ET+ARYEHP S FSFGWSHGKE+LE G PDLAKGSFYANPCFDAPF D G +V ++ SFAHPNVWPD +VP FS AFK LG+AVVRVG LVARQCDR
Sbjct: 9 RYEDLVRDDEAGDLHAVAERAFGHQGLGIVVVTGVPDVAGARRELFALGHKFAALPEETKARYEHPQSCFSFGWSHGKESLETGGPDLAKGSFYANPCFDAPFGGDGGXXXXXXXXXXAGSGEDGGVEGRGPDRLLHRPEKGDHCGGNNAGEEGXXXXXXXXXXXXXXXXXXXXXXXXALVEKYPSFAHPNVWPDADVPGFSAAFKALGRAVVRVGGLVARQCDR 233
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2QT45_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QT45_9EUKA) HSP 1 Score: 198 bits (504), Expect = 5.790e-58 Identity = 104/262 (39.69%), Postives = 146/262 (55.73%), Query Frame = 1
Query: 4 YEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYFPRSFLENAQRPGVSGGLKGASGLAHGVGTPPTFRGGAAIGDGIGVGTETEIGISDVVDDDGSFSDWCGWHHDHSSLTGVV 789
YE+L DL + E+AFG GLGI+ + + ++G R + G +FA + + +A+YEH S + FGWSHGKE L+ G PD +KGSFY NP + PF +DPG+V + +FA PN+WP +EVP F +G+ VV+VG +VA QCD++VS + YE+ +L R++ST++ CK R LHYFP R G +E E + D FS+WCGWH+DHSSLTG+V
Sbjct: 14 YEELKSGKDLCQIVEKAFGYNGLGIIGIYGIEEVGKLREAVFRDGFKFATMDEHVKAKYEHKDSYYGFGWSHGKENLQ-GYPDYSKGSFYNNPLVNKPF-EDPGMVDKLPAFASPNLWPSQEVPSLEKNFMNMGKLVVKVGTMVAAQCDKFVSSKCKTYEKNRLYRMISTNKVCKARLLHYFPIEEKNQHSREGKQ--------------------------------SEDEKSSKKMQD---PFSNWCGWHNDHSSLTGLV 238
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Match: A0A7S2SF68_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SF68_9STRA) HSP 1 Score: 196 bits (499), Expect = 4.150e-57 Identity = 92/174 (52.87%), Postives = 121/174 (69.54%), Query Frame = 1
Query: 28 DLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFANLPQETRARYEHPSSSFSFGWSHGKETLEAGRPDLAKGSFYANPCFDAPFADDPGVVTRHVSFAHPNVWPDEEVPEFSVAFKELGQAVVRVGILVARQCDRYVSRVHRGYEEGKLERIVSTSRCCKGRFLHYF 549
DL+D RA+ +GLGI+ V+ +P + + R L+ L +RFA LP+ T+A+YEHP S +SFGWSHGKE L+ G+PDLAKGSFYANP +D P DD ++ + F HPN+WP E+VPE AFK +G+ VV VG LVA QCD +V + Y E KL +I+ +S CCK R LHYF
Sbjct: 55 DLSDAVARAYSYDGLGILTVSNIPGLEERRAALLPLAKRFAELPETTKAKYEHPESFYSFGWSHGKEKLQ-GKPDLAKGSFYANPQYDRP-VDDEALIQQFTPFIHPNIWPTEDVPELEGAFKRMGELVVEVGALVALQCDAFVRKEIPSYPEHKLHKIIKSSLCCKARLLHYF 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54363.12807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54363.12807.1 >prot_H-elongata_contig54363.12807.1 ID=prot_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp RYEDLVGDADLTDVAERAFGREGLGIVVVTRVPDIGDSRRNLMELGRRFAback to top mRNA from alignment at H-elongata_contig54363:1795..3724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54363.12807.1 ID=mRNA_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1930bp|location=Sequence derived from alignment at H-elongata_contig54363:1795..3724+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54363:1795..3724+ >mRNA_H-elongata_contig54363.12807.1 ID=mRNA_H-elongata_contig54363.12807.1|Name=mRNA_H-elongata_contig54363.12807.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig54363:1795..3724+ (Himanthalia elongata Himel1 dioecious)back to top |