mRNA_H-elongata_contig5436.12806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5436.12806.1
Unique NamemRNA_H-elongata_contig5436.12806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6H5KVR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR4_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.780e-58
Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            MEYWVRTP CK AK KH+ ++D + +SREQ   ETVFTCPFTG +RDI+LERNMFPYDVPTDVEHWTLWSR DL + EME FV+ WAAENH HAVEWECDNNEG+RSIDW+HVHVF
Sbjct:  310 MEYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRDIVLERNMFPYDVPTDVEHWTLWSRRDLPKDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVF 425          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: D8LK74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK74_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.530e-57
Identity = 88/117 (75.21%), Postives = 100/117 (85.47%), Query Frame = 1
Query:    1 QMEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            QM+YWVRTP CK AK KH+ ++D + +SREQ   ETVFTCPFTG +R I+LERNMFPYDVPTDVEHWTLWSR+DL   EME FV+ WAAENH HAVEWECDNNEG+RSIDW+HVHVF
Sbjct:  314 QMDYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRAIVLERNMFPYDVPTDVEHWTLWSRKDLPNDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVF 430          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A836CLJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.240e-33
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            ME+WVR   CK  K +H+ ++D    SREQ   +TVFT P TG  RD +LE NMFPY  P DVEHWTLWSR D+   E++ +V +W   N  H   W  D+N GDRSI W+HVHV+
Sbjct:  133 MEFWVRGEECKRLKTEHLDFIDSHYSSREQFIEDTVFTDPMTGEVRDTVLEPNMFPYQTPPDVEHWTLWSRSDMTHEEIQAWVTEWLMVNKPHVRRWNYDDNAGDRSIYWFHVHVY 248          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6A3KAU7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KAU7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.050e-25
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            ++YW RT  C E K  HM  +D +  SRE+  + T   T    +  LE NMFPYD P  +EHWTLWSR ++D AE+EE+V  W  EN  H   W  D N   RSID +HVHV+
Sbjct:   63 LQYWDRTDECLERKWAHMDMVDDLFESREELILAT---TLSHTETALEPNMFPYDTPDGIEHWTLWSRHEMDNAEIEEYVCDWLRENAPHVERWNYDENLS-RSIDIFHVHVY 171          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A7S3HKL5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKL5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 8.160e-25
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            +E+W RT  CKEAKL+H   +D M  SRE   + T   T  + DI+LE NMFPY  P  VEH+TLWS EDL   ++  FV++W   +  H   W+ D+N G+RSID +HVHVF
Sbjct:  352 LEWWERTDHCKEAKLRHTDRIDHMCGSRESLVLKT---TLWKEDIVLEPNMFPYYTPYGVEHYTLWSVEDLTHEQIVSFVDRWLYRHMPHVRRWQYDDNSGERSIDLFHVHVF 461          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A7S3HJF2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJF2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.180e-24
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            +E+W RT  CKEAKL+H   +D M  SRE   + T   T  + DI+LE NMFPY  P  VEH+TLWS EDL   ++  FV++W   +  H   W+ D+N G+RSID +HVHVF
Sbjct:  487 LEWWERTDHCKEAKLRHTDRIDHMCGSRESLVLKT---TLWKEDIVLEPNMFPYYTPYGVEHYTLWSVEDLTHEQIVSFVDRWLYRHMPHVRRWQYDDNSGERSIDLFHVHVF 596          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A3M6VCZ3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCZ3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.240e-24
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            +EYW RT  C E K  HM  +D+M  SRE+  + T   T   ++ +LE NMFPYD P  + HWTLWSR +++  E+EEFV  W  EN      W  D N   RSID +HVHV+
Sbjct:    6 VEYWDRTDECLERKWAHMDMVDRMFNSREELILAT---TLHHKETVLEPNMFPYDTPKGISHWTLWSRHEMNHTEIEEFVCNWIRENAPQVERWNYDENLS-RSIDIFHVHVY 114          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A0P1AIQ1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIQ1_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 1.810e-24
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 QMEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            ++EYW R+  C + K  HM  +DK   SRE+  + T   T    + +LERNMFPYD P+ +EHWTLWSR ++ + E+E+FV  W  +N L    W  D N   RSID +HVHV+
Sbjct:   57 RLEYWGRSHECLQRKWAHMEAIDKSFDSREELILAT---TLSNEESVLERNMFPYDTPSGIEHWTLWSRHEMKEIEIEQFVWNWLRKNALQVDSWNYDENMS-RSIDIFHVHVY 166          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: K3X7P6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7P6_GLOUD)

HSP 1 Score: 98.6 bits (244), Expect = 3.460e-24
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            ++YW R+  C E K  HM  +D+++ SRE+  + T   T     I+LE NMFPY  P  +EHWTLWSR ++   E+E +V  W  EN  H   W  D N   RSID +HVHV+
Sbjct:    8 IDYWDRSEECLERKWDHMDMIDEVSPSREEHILST---TLRDEHIILEPNMFPYTTPDGIEHWTLWSRNEMGDQEVEAYVSSWITENAPHVKSWNFDEN-SSRSIDLFHVHVY 116          
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6U1PGM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PGM4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.880e-24
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
            +EYW RT  C   K  HM ++D    SRE    F      + RD +LE NMFPYD P D+ HWT+W R ++ + E+ ++VE W  + + + VEW  D+N G+RSID YHVHV+
Sbjct:   69 IEYWDRTDDCINKKWDHMDFIDANFDSREN---FILETALLNRDHMLEPNMFPYDTPEDILHWTMWCRWEMSEEELIKYVENWM-KKYPYIVEWNYDDNAGERSIDLYHVHVY 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR4_9PHAE1.780e-5876.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK74_ECTSI1.530e-5775.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLJ2_9STRA1.240e-3351.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3KAU7_9STRA8.050e-2546.90Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A7S3HKL5_9STRA8.160e-2548.67Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3HJF2_9STRA1.180e-2448.67Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A3M6VCZ3_9STRA1.240e-2446.02Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1AIQ1_PLAHL1.810e-2444.74Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
K3X7P6_GLOUD3.460e-2443.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U1PGM4_9STRA3.880e-2444.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5436contigH-elongata_contig5436:10301..11055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.7e-47
Seed eggNOG ortholog2880.D8LK74
EggNOG OGs2DZE1@1,2S6YE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5436.12806.1prot_H-elongata_contig5436.12806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5436 10304..11055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.0070145-UTR-H-elongata_contig5436:10300..103031622930885.0070145-UTR-H-elongata_contig5436:10300..10303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5436 10301..10303 +
1691679611.3587625-UTR-H-elongata_contig5436:10300..103031691679611.3587625-UTR-H-elongata_contig5436:10300..10303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5436 10301..10303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.0259595-CDS-H-elongata_contig5436:10303..103931622930885.0259595-CDS-H-elongata_contig5436:10303..10393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5436 10304..10393 +
1691679611.3762712-CDS-H-elongata_contig5436:10303..103931691679611.3762712-CDS-H-elongata_contig5436:10303..10393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5436 10304..10393 +
1622930885.0477457-CDS-H-elongata_contig5436:10806..110551622930885.0477457-CDS-H-elongata_contig5436:10806..11055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5436 10807..11055 +
1691679611.3952723-CDS-H-elongata_contig5436:10806..110551691679611.3952723-CDS-H-elongata_contig5436:10806..11055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5436 10807..11055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5436.12806.1

>prot_H-elongata_contig5436.12806.1 ID=prot_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERN
MFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNE
GDRSIDWYHVHVF
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mRNA from alignment at H-elongata_contig5436:10301..11055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5436.12806.1 ID=mRNA_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=755bp|location=Sequence derived from alignment at H-elongata_contig5436:10301..11055+ (Himanthalia elongata Himel1 dioecious)
CAGATGGAGTACTGGGTGCGCACCCCAGCGTGTAAGGAGGCCAAATTGAA GCACATGGCTTACATGGACAAGATGACATTTTCAAGGGAACAGGTGGGCA CCGATCATACCGTAAAGTTATCCTCTAATAATCGAAATTATTCCCCATAA TATTTTGAGTGTCGTCGCTGTCCGTTCTCAATTTAGTTCCTCTTTCCCTT GAGAAGTTAGAGCTCGTGACGATTGTTTATCAAAACTAATACTATATATA TATATATACATATGACATCCCAACCCTCCGATCATTCTCACTTCCTTAGC GCCGCCGTGAGAGGTGCAGTTCAGGTGACCAACTACCGTCAGGTTCGAAT GTTTCCAATACCACTTTTGAGCACAAAATCATCACATAGGTATGTGATTA ATCGTGTTTCCCAATAGTTAATACGTAGTAGTAGTAAAAAATACCCTAAA AAAATGTTTCCCAACTGCAACGACGACGTTTTTGTAACTCCCCACAGTTC ATCGAGGAGACGGTCTTTACCTGCCCATTTACTGGAGTCCAACGAGACAT CCTGCTTGAGCGAAACATGTTTCCGTACGACGTTCCCACTGACGTTGAGC ACTGGACGCTTTGGAGCCGAGAGGACCTCGACCAGGCAGAGATGGAAGAG TTTGTCGAAAAGTGGGCGGCGGAAAACCACCTGCATGCGGTCGAATGGGA GTGCGACAACAACGAGGGCGACCGCTCCATAGATTGGTACCACGTACACG TCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig5436:10301..11055+

>mRNA_H-elongata_contig5436.12806.1 ID=mRNA_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig5436:10301..11055+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTACTGGGTGCGCACCCCAGCGTGTAAGGAGGCCAAATTGAAGCA
CATGGCTTACATGGACAAGATGACATTTTCAAGGGAACAGATGGAGTACT
GGGTGCGCACCCCAGCGTGTAAGGAGGCCAAATTGAAGCACATGGCTTAC
ATGGACAAGATGACATTTTCAAGGGAACAGGAGACGGTCTTTACCTGCCC
ATTTACTGGAGTCCAACGAGACATCCTGCTTGAGCGAAACATGTTTCCGT
ACGACGTTCCCACTGACGTTGAGCACTGGACGCTTTGGAGCCGAGAGGAC
CTCGACCAGGCAGAGATGGAAGAGTTTGTCGAAAAGTGGGCGGCGGAAAA
CCACCTGCATGCGGTCGAATGGGAGTGCGACAACAACGAGGGCGACCGCT
CCATAGATTGGTACCACGTACACGTCTTTGAGACGGTCTTTACCTGCCCA
TTTACTGGAGTCCAACGAGACATCCTGCTTGAGCGAAACATGTTTCCGTA
CGACGTTCCCACTGACGTTGAGCACTGGACGCTTTGGAGCCGAGAGGACC
TCGACCAGGCAGAGATGGAAGAGTTTGTCGAAAAGTGGGCGGCGGAAAAC
CACCTGCATGCGGTCGAATGGGAGTGCGACAACAACGAGGGCGACCGCTC
CATAGATTGGTACCACGTACACGTCTTT
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