prot_H-elongata_contig54348.12805.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54348.12805.1
Unique Nameprot_H-elongata_contig54348.12805.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length293
Homology
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BLAST of mRNA_H-elongata_contig54348.12805.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 7.020e-87
Identity = 206/291 (70.79%), Postives = 226/291 (77.66%), Query Frame = 0 
Query:    2 GARIFEGAIFRDMVCRFHNMRYLSLDGTFYVKSDAMSALAMAGQQLQQASAWLGLVCLCGFRQLKDEDVQLLLDSCPILTALSVADCTSLGALILSSRQLRTLXXXXXXXXXXXXXXXXXXXXXXXXXXTKLPDNAVESLVATCKSLEHLGLKGCSSLATPSIQSANLKSLDLSLCGRLTTCSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTLTLSCTKLEYVNLRGSYKLASSNIQSRCPALSVVDLCGTSINPEAFARSDGQGEGDVIQGGAPLNWHTY 292
            GARI     FRDMV  F +MRYLSLDGTFYVKS A++ALA AGQQLQ+ S       LCGFRQLKDEDVQ LLDSCP L+ LSVADCT+LG+L+L S QL+T XXXXXXXXXXXXXXXXXXXXXXXXXX   PD AVESL+ +C +LEHLGLKGCS+L +P+IQSA L+SL              XXXXXXXXXXXXXXXXXXXXXXXXX         +  LTL+C KL Y NLRGSYKL S+NIQSRCP LSVVDLCGT INPEAF RSDG+GEGDVIQGGAPL WHTY
Sbjct:  100 GARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVS-------LCGFRQLKDEDVQFLLDSCPSLSVLSVADCTTLGSLVLRSTQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAVESLMGSCLALEHLGLKGCSALVSPTIQSAKLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLDLSMLGVKNLTLNCNKLVYANLRGSYKLESANIQSRCPGLSVVDLCGTKINPEAFVRSDGEGEGDVIQGGAPLPWHTY 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54348.12805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI7.020e-8770.79Hypothetical F-box and leucine rich repeat contain... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 166..193
e-value: 51.0
score: 9.1
coord: 119..144
e-value: 0.019
score: 24.1
coord: 228..245
e-value: 520.0
score: 1.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..165
e-value: 3.8E-21
score: 77.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 166..273
e-value: 3.2E-6
score: 27.7
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 19..266
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 57..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54348contigH-elongata_contig54348:1647..3762 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54348.12805.1mRNA_H-elongata_contig54348.12805.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54348 103..3795 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54348.12805.1 ID=prot_H-elongata_contig54348.12805.1|Name=mRNA_H-elongata_contig54348.12805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MGARIFEGAIFRDMVCRFHNMRYLSLDGTFYVKSDAMSALAMAGQQLQQA
SAWLGLVCLCGFRQLKDEDVQLLLDSCPILTALSVADCTSLGALILSSRQ
LRTLDVSRCMHISEMSLDMPSLTRLDASWCTKLPDNAVESLVATCKSLEH
LGLKGCSSLATPSIQSANLKSLDLSLCGRLTTCSTSCQSLTQLSVEMCMG
LVSLALDLPMMKGLDLSMLGIVTLTLSCTKLEYVNLRGSYKLASSNIQSR
CPALSVVDLCGTSINPEAFARSDGQGEGDVIQGGAPLNWHTY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf