mRNA_H-elongata_contig54310.12804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54310.12804.1
Unique NamemRNA_H-elongata_contig54310.12804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Match: A0A6H5KFE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.950e-19
Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:    3 VGQLEMDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPV-GTRASKKQNRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQRAL*ASPQSSSLPPV 323
            VGQLEMDR+ ILQGCRDGFAACYD F G A + A    A  DDG  V G  A     R+GAE+AL+YFPDS LS   DI   + + G LI + +        S LPP+
Sbjct:  117 VGQLEMDRRVILQGCRDGFAACYDAFVGPAKSLA---AAAADDGADVVGPLA-----RSGAEMALEYFPDSLLSTLADINATYLETGHLISDNQG---QGLFSPLPPL 213
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BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Match: D8LUD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUD0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.760e-19
Identity = 56/108 (51.85%), Postives = 65/108 (60.19%), Query Frame = 3 
Query:    3 VGQLEMDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPV-GTRASKKQNRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQRAL*ASPQSSSLPPV 323
            VGQLEMDR+ ILQGCRDGFAACYD F G A + A    A  DDG  V G  A     R+GAEVAL+YFPDS LS   DI   + + G LI + +        S LPP+
Sbjct:  650 VGQLEMDRRVILQGCRDGFAACYDAFVGPAKSLA---AAAADDGADVVGPLA-----RSGAEVALEYFPDSLLSTPADINATYLETGHLISDNQG---QGLFSPLPPL 746
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54310.12804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFE2_9PHAE5.950e-1950.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LUD0_ECTSI9.760e-1951.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54310contigH-elongata_contig54310:64..1357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2e-13
Seed eggNOG ortholog2880.D8LUD0
EggNOG free text desc.Patatin-like phospholipase
EggNOG OGs29GN1@1,2RPUA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size682
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54310.12804.1prot_H-elongata_contig54310.12804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54310 81..965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.7317872-UTR-H-elongata_contig54310:63..801622930884.7317872-UTR-H-elongata_contig54310:63..80Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54310 64..80 +
1691679611.2369967-UTR-H-elongata_contig54310:63..801691679611.2369967-UTR-H-elongata_contig54310:63..80Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54310 64..80 +
1622930884.7824874-UTR-H-elongata_contig54310:965..13571622930884.7824874-UTR-H-elongata_contig54310:965..1357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54310 966..1357 +
1691679611.2767813-UTR-H-elongata_contig54310:965..13571691679611.2767813-UTR-H-elongata_contig54310:965..1357Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54310 966..1357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.7508335-CDS-H-elongata_contig54310:80..2201622930884.7508335-CDS-H-elongata_contig54310:80..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54310 81..220 +
1691679611.2469754-CDS-H-elongata_contig54310:80..2201691679611.2469754-CDS-H-elongata_contig54310:80..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54310 81..220 +
1622930884.7686603-CDS-H-elongata_contig54310:832..9651622930884.7686603-CDS-H-elongata_contig54310:832..965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54310 833..965 +
1691679611.2561765-CDS-H-elongata_contig54310:832..9651691679611.2561765-CDS-H-elongata_contig54310:832..965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54310 833..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54310.12804.1

>prot_H-elongata_contig54310.12804.1 ID=prot_H-elongata_contig54310.12804.1|Name=mRNA_H-elongata_contig54310.12804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MDRQKILQGCRDGFAACYDIFKGSAAAEAGRETAPGDDGLPVGTRASKKQ
NRTGAEVALDYFPDSTLSVSTDIGGNHFQPGRLIGEQRAL*
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mRNA from alignment at H-elongata_contig54310:64..1357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54310.12804.1 ID=mRNA_H-elongata_contig54310.12804.1|Name=mRNA_H-elongata_contig54310.12804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1294bp|location=Sequence derived from alignment at H-elongata_contig54310:64..1357+ (Himanthalia elongata Himel1 dioecious)
AGGTCGGTCAGCTGGAGATGGACCGTCAGAAGATACTGCAGGGCTGTCGG
GACGGGTTCGCGGCTTGTTACGACATTTTCAAGGGATCGGCCGCAGCAGA
AGCGGGAAGGGAGACTGCGCCAGGAGACGACGGTCTCCCCGTAGGCACTC
GGGCTAGGTAAGAAGGCGGCTCTCCCGAGGGAACCTTGCCGCCGTGCTTC
CGTCCATCAGACATCAAGGTCGAATTCTGGTCATTTATATAGTACTGGTA
CATGATTATCTGTGACGGAGTGGAGTGGAGTGAAGCGAAGTGTAAAAAAA
TCAGTGAAATAAGTGAGTGAGTGGTCGGCGTTTTTTTTTTTTTATAAAGC
GGATGGATGGCTCTGCTGCTGGCGGCTAGCGGCTGCGACGAGTCGATCGA
TGAAGACGCGGAGCGTAGAACACAATCGGTTGACGGCACGCTCCTCCGCG
CTATATCTCTCGATCCTTAGCAAGCTCCGGCGGCGGCAAACCTCTCTCGC
ACCCGCGGCACCAGACCCTCACTGTGCTCTCTCTCCTCTCAATACTTTAC
AAAGTACGTTTCATAAACTAGAATATTTTGATTAGATCCCTAAGCTGGAT
CACTCTTACCCCCCCCCCCCCTCTTTCCACGCGTGCGTGTTTGATCGATG
TCCATGCCCCGCTCGTTCGTATGTGTCCCAACCGTCTCTCTTTCTATTTA
TCTTCCTCCTACGACACGCCTCTCTCTCATCCTCAAAACCCTGGGTTCGG
GGCCACCGCCCTAAAAAAGCAAAAAACAAAACAGGACGGGTGCAGAGGTG
GCGCTCGACTACTTCCCCGATTCCACGCTTTCCGTTTCCACTGATATTGG
TGGAAACCACTTCCAGCCTGGGCGCCTGATCGGGGAGCAGCGAGCGCTGT
AAGCCTCGCCACAATCATCGTCACTACCGCCAGTATACGACGAAATGTGG
AATAAGAATCGGAGCTCAACGCTGTCAGACGGGTATTTGATTGATTGTTT
TGATTGTGATTCAATTATTACATAAGCTGATGTCAAAATCCAGCCCGTGG
TCGCGAGGTAGAAAAAATACACCATCCGGAAAGGAGAAAAACGTCCAAGG
TACTCTCCAATACAAAAGGAAACGGCAAATGGTGCATGTATGCATTCGAA
CATGACGATAGTTGGTCCCCTGGATTGCACCTCTCACGGCGCTAAGAAGG
TGTGGATGTTCGAAGGGTTGGAATTATATATATATAAATACTTGGAAAAA
GCGACTTCTCTAAAGAAAAAGAAACGCAAAAAAGAGAACACACG
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Coding sequence (CDS) from alignment at H-elongata_contig54310:64..1357+

>mRNA_H-elongata_contig54310.12804.1 ID=mRNA_H-elongata_contig54310.12804.1|Name=mRNA_H-elongata_contig54310.12804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig54310:64..1357+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGTCAGAAGATACTGCAGGGCTGTCGGGACGGGTTCGCGGCTTG
TTACGACATTTTCAAGGGATCGGCCGCAGCAGAAGCGGGAAGGGAGACTG
CGCCAGGAGACGACGGTCTCCCCGTAGGCACTCGGGCTAGATGGACCGTC
AGAAGATACTGCAGGGCTGTCGGGACGGGTTCGCGGCTTGTTACGACATT
TTCAAGGGATCGGCCGCAGCAGAAGCGGGAAGGGAGACTGCGCCAGGAGA
CGACGGTCTCCCCGTAGGCACTCGGGCTAGCAAAAAACAAAACAGGACGG
GTGCAGAGGTGGCGCTCGACTACTTCCCCGATTCCACGCTTTCCGTTTCC
ACTGATATTGGTGGAAACCACTTCCAGCCTGGGCGCCTGATCGGGGAGCA
GCGAGCGCTGTAACAAAAAACAAAACAGGACGGGTGCAGAGGTGGCGCTC
GACTACTTCCCCGATTCCACGCTTTCCGTTTCCACTGATATTGGTGGAAA
CCACTTCCAGCCTGGGCGCCTGATCGGGGAGCAGCGAGCGCTGTAA
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