prot_H-elongata_contig543.12802.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig543.12802.1
Unique Nameprot_H-elongata_contig543.12802.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length586
Homology
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-13
Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 0
Query:  510 CAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 565
            CAPGTE TGRWTK EH  FL+ +  Y   W+ V+ +VGTRT  Q RTHAQKY  KL
Sbjct:   22 CAPGTEQTGRWTKGEHDLFLKALGVYGKEWKRVAAMVGTRTVVQTRTHAQKYFQKL 77          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: W7TIJ3_9STRA (SANT/Myb domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIJ3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.320e-13
Identity = 48/111 (43.24%), Postives = 61/111 (54.95%), Query Frame = 0
Query:  468 PALIDAPTLSVVPPSLPGALPDPVAGGVALIDLHTEPTVTRPCAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFLFGQSRDAA 578
            PAL+ A      PPSL G  P P  G           ++   CAPG E+TGRW++ EH RF++G+KK+   W+ V+  VGTRT  Q RTHAQKY  KL      G S + A
Sbjct:   24 PALVQA-WEGHSPPSL-GPSPPPSLGS----------SLAPVCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKHMANGASLEDA 122          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.880e-12
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0
Query:  498 IDLHTEPTVTRPCAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 565
            ++  T    TR    GT NTGRWT+DEH RF++G++ Y   W+ V+ ++ +RT  Q RTHAQKY  KL
Sbjct:    1 MNYATHAPTTRTTEKGTVNTGRWTRDEHERFVKGLELYGREWKKVASMIPSRTVVQIRTHAQKYFQKL 68          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A4D9CLC8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLC8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-11
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0
Query:  510 CAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFLFGQSRDAA 578
            CAPG E+TGRW++ EH RF++G+KK+   W+ V+  VGTRT  Q RTHAQKY  KL  +   G S + A
Sbjct:  220 CAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKQMANGASLEDA 288          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A835ZEA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.040e-11
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 0
Query:  517 TGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 565
            TGRWT +EH RFL+G++++  +W+L++DL+ TRT  Q RTHAQK+  K+
Sbjct:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKM 49          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A2R5GNG8_9STRA (Myb family DNA-binding protein, SHAQKYF family n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNG8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 0
Query:  512 PGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 565
            P  ENTGRWTK+EHT+FLEG+K +   W+ +S+++ +RT  Q RTHAQKY  KL
Sbjct:   46 PTGENTGRWTKEEHTKFLEGLKLHGKEWKKISNMIDSRTVVQIRTHAQKYFQKL 99          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S3PLD0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLD0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.240e-10
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 0
Query:  512 PGTENTGRWTKDEHTRFLEGIKKYQNR-WQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFL 570
            PGTENTGRW+ +EH++FLEG+  + N+ W  ++D+V TRT  Q RTHAQKY  KL  + L
Sbjct:  393 PGTENTGRWSHEEHSKFLEGMNMFGNKNWTCIADVVKTRTVVQVRTHAQKYFKKLRKQKL 452          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A2R5GBW6_9STRA (Myb family DNA-binding protein, SHAQKYF family n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBW6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.000e-10
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  512 PGTENTGRWTKDEHTRFLEGIKKYQNR-WQLVSDLVGTRTPTQCRTHAQKYTIKLNV 567
            PGTENTGRWT +EH RFL GI KY  + W  ++++V TRT  Q RTHAQKY  K  +
Sbjct:  512 PGTENTGRWTNEEHARFLSGIAKYGTKHWTAIANVVKTRTVVQVRTHAQKYFKKRGI 568          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S3K773_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3K773_EUPCR)

HSP 1 Score: 69.7 bits (169), Expect = 4.730e-10
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0
Query:  517 TGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNV 567
            TGRWT DEH RFLE I+KY   W+ V   VGTR+ TQ R+HAQK+  K+N+
Sbjct:   50 TGRWTDDEHNRFLEAIEKYGRDWKRVQQHVGTRSSTQSRSHAQKFFRKINL 100          
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: L1IG99_GUITC (Uncharacterized protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IG99_GUITC)

HSP 1 Score: 65.5 bits (158), Expect = 5.350e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0
Query:  515 ENTGRWTKDEHTRFLEGIKKYQNRWQL---VSDLVGTRTPTQCRTHAQKYTIKLN 566
            +N  +WTK+EH RFL+ +KKY     L   VS+ VGTRTP Q R+HAQKY ++LN
Sbjct:    1 QNQSQWTKEEHDRFLQALKKYLPSGALAKKVSEFVGTRTPLQVRSHAQKYFLRLN 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHT8_9STRA2.140e-1360.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TIJ3_9STRA3.320e-1343.24SANT/Myb domain protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1C6P3_9STRA2.880e-1247.06Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CLC8_9STRA1.070e-1152.17Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZEA3_9STRA5.040e-1153.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2R5GNG8_9STRA1.400e-1057.41Myb family DNA-binding protein, SHAQKYF family n=1... [more]
A0A7S3PLD0_9STRA3.240e-1055.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5GBW6_9STRA4.000e-1057.89Myb family DNA-binding protein, SHAQKYF family n=1... [more]
A0A7S3K773_EUPCR4.730e-1058.82Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
L1IG99_GUITC5.350e-1054.55Uncharacterized protein (Fragment) n=2 Tax=Guillar... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 256..304
e-value: 0.0015
score: 27.8
coord: 58..102
e-value: 1.4E-5
score: 34.6
coord: 421..466
e-value: 2.8E-7
score: 40.2
coord: 306..355
e-value: 6.8E-4
score: 28.9
IPR001005SANT/Myb domainSMARTSM00717santcoord: 516..564
e-value: 6.1E-13
score: 59.0
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 517..561
e-value: 4.7E-15
score: 55.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 371..467
e-value: 2.8E-9
score: 39.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 306..366
e-value: 1.3E-5
score: 26.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 39..112
e-value: 2.4E-8
score: 35.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 257..305
e-value: 6.9E-6
score: 27.9
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 422..467
e-value: 2.2E-7
score: 30.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 56..104
score: 8.849
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 419..468
score: 8.733
NoneNo IPR availableGENE3D1.10.10.60coord: 519..565
e-value: 2.6E-15
score: 58.2
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 417..565
NoneNo IPR availablePANTHERPTHR12802:SF20MPN DOMAIN-CONTAINING PROTEIN CG4751coord: 417..565
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 519..564
e-value: 1.1E-7
score: 30.1
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 514..566
score: 15.071
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 307..355
score: 8.506
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 514..565
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 57..103
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 306..357
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 249..306
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 417..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig543contigH-elongata_contig543:5220..7273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig543.12802.1mRNA_H-elongata_contig543.12802.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig543 4646..7640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig543.12802.1 ID=prot_H-elongata_contig543.12802.1|Name=mRNA_H-elongata_contig543.12802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=586bp
MTRDSLRGARAPAFLPSRRITRSKRTPPQRKTSQASGREPRAKRPRISNG
AAVSTRRYCVSCGNSKGELAKCATCKGLYHIRCVGSSGKGVPGPGWVCGV
CNLPEELTRAVAIAPGPCAPASQPMSETKSHSAVLVQSMLARLSGTSIST
SDQRLYSGLKNSVDDPLIAHTKLPFDHQEKGADSNSVTDAVLAWTLKRVG
GEGGTGNTLPREPLKQRSSKESDQESVQRRSGGMRRAISGVGDSNCLLVF
GSIGPRCYCGNTDVTKATARCVSCAAVFHPSCMDPPYPTVKSLPVGGYTC
LACRPTCGVCDMGISPELPASLKIACAGCKHVFHRACLTPLVTGQCEEWE
CLECSLALEDRDDNNDALPVETREPSAPHAGSMINRDVSRSKTDEQQGLA
STARTVATSRVVGKANRRQRACVVCGVAEGKRMNVCGSCGDAYHSLCLDR
PRTRRAGDSWRCDSCRPPALIDAPTLSVVPPSLPGALPDPVAGGVALIDL
HTEPTVTRPCAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRT
PTQCRTHAQKYTIKLNVRFLFGQSRDAARSEFERR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR001005SANT/Myb
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR006447Myb_dom_plants
IPR017930Myb_dom
IPR001841Znf_RING
IPR009057Homeobox-like_sf
IPR011011Znf_FYVE_PHD