mRNA_H-elongata_contig543.12802.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.330e-13 Identity = 34/56 (60.71%), Postives = 39/56 (69.64%), Query Frame = 2
Query: 2072 CAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 2239
CAPGTE TGRWTK EH FL+ + Y W+ V+ +VGTRT Q RTHAQKY KL
Sbjct: 22 CAPGTEQTGRWTKGEHDLFLKALGVYGKEWKRVAAMVGTRTVVQTRTHAQKYFQKL 77
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: W7TIJ3_9STRA (SANT/Myb domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIJ3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 5.800e-13 Identity = 48/111 (43.24%), Postives = 61/111 (54.95%), Query Frame = 2
Query: 1946 PALIDAPTLSVVPPSLPGALPDPVAGGVALIDLHTEPTVTRPCAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFLFGQSRDAA 2278
PAL+ A PPSL G P P G ++ CAPG E+TGRW++ EH RF++G+KK+ W+ V+ VGTRT Q RTHAQKY KL G S + A
Sbjct: 24 PALVQA-WEGHSPPSL-GPSPPPSLGS----------SLAPVCAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKHMANGASLEDA 122
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.550e-12 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2
Query: 2036 IDLHTEPTVTRPCAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 2239
++ T TR GT NTGRWT+DEH RF++G++ Y W+ V+ ++ +RT Q RTHAQKY KL
Sbjct: 1 MNYATHAPTTRTTEKGTVNTGRWTRDEHERFVKGLELYGREWKKVASMIPSRTVVQIRTHAQKYFQKL 68
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A4D9CLC8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLC8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.320e-11 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 2
Query: 2072 CAPGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFLFGQSRDAA 2278
CAPG E+TGRW++ EH RF++G+KK+ W+ V+ VGTRT Q RTHAQKY KL + G S + A
Sbjct: 220 CAPGAEHTGRWSRLEHDRFVDGLKKWGKEWKRVAGEVGTRTVVQTRTHAQKYFQKLQKQMANGASLEDA 288
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A835ZEA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 7.670e-11 Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 2
Query: 2093 TGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 2239
TGRWT +EH RFL+G++++ +W+L++DL+ TRT Q RTHAQK+ K+
Sbjct: 1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKM 49
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A2R5GNG8_9STRA (Myb family DNA-binding protein, SHAQKYF family n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNG8_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.710e-10 Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 2
Query: 2078 PGTENTGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKL 2239
P ENTGRWTK+EHT+FLEG+K + W+ +S+++ +RT Q RTHAQKY KL
Sbjct: 46 PTGENTGRWTKEEHTKFLEGLKLHGKEWKKISNMIDSRTVVQIRTHAQKYFQKL 99
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S3PLD0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLD0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 6.440e-10 Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query: 2078 PGTENTGRWTKDEHTRFLEGIKKYQNR-WQLVSDLVGTRTPTQCRTHAQKYTIKLNVRFL 2254
PGTENTGRW+ +EH++FLEG+ + N+ W ++D+V TRT Q RTHAQKY KL + L
Sbjct: 393 PGTENTGRWSHEEHSKFLEGMNMFGNKNWTCIADVVKTRTVVQVRTHAQKYFKKLRKQKL 452
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A7S3K773_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3K773_EUPCR) HSP 1 Score: 69.7 bits (169), Expect = 7.820e-10 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2
Query: 2093 TGRWTKDEHTRFLEGIKKYQNRWQLVSDLVGTRTPTQCRTHAQKYTIKLNV 2245
TGRWT DEH RFLE I+KY W+ V VGTR+ TQ R+HAQK+ K+N+
Sbjct: 50 TGRWTDDEHNRFLEAIEKYGRDWKRVQQHVGTRSSTQSRSHAQKFFRKINL 100
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: A0A2R5GBW6_9STRA (Myb family DNA-binding protein, SHAQKYF family n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBW6_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 8.120e-10 Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2
Query: 2078 PGTENTGRWTKDEHTRFLEGIKKYQNR-WQLVSDLVGTRTPTQCRTHAQKYTIKLNV 2245
PGTENTGRWT +EH RFL GI KY + W ++++V TRT Q RTHAQKY K +
Sbjct: 512 PGTENTGRWTNEEHARFLSGIAKYGTKHWTAIANVVKTRTVVQVRTHAQKYFKKRGI 568
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Match: L1IG99_GUITC (Uncharacterized protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IG99_GUITC) HSP 1 Score: 65.5 bits (158), Expect = 8.160e-10 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 2
Query: 2087 ENTGRWTKDEHTRFLEGIKKYQNRWQL---VSDLVGTRTPTQCRTHAQKYTIKLN 2242
+N +WTK+EH RFL+ +KKY L VS+ VGTRTP Q R+HAQKY ++LN
Sbjct: 1 QNQSQWTKEEHDRFLQALKKYLPSGALAKKVSEFVGTRTPLQVRSHAQKYFLRLN 55 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig543.12802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig543.12802.1 >prot_H-elongata_contig543.12802.1 ID=prot_H-elongata_contig543.12802.1|Name=mRNA_H-elongata_contig543.12802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=586bp MTRDSLRGARAPAFLPSRRITRSKRTPPQRKTSQASGREPRAKRPRISNGback to top mRNA from alignment at H-elongata_contig543:4646..7640+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig543.12802.1 ID=mRNA_H-elongata_contig543.12802.1|Name=mRNA_H-elongata_contig543.12802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2995bp|location=Sequence derived from alignment at H-elongata_contig543:4646..7640+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig543:4646..7640+ >mRNA_H-elongata_contig543.12802.1 ID=mRNA_H-elongata_contig543.12802.1|Name=mRNA_H-elongata_contig543.12802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3516bp|location=Sequence derived from alignment at H-elongata_contig543:4646..7640+ (Himanthalia elongata Himel1 dioecious)back to top |