prot_H-elongata_contig54296.12800.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54296.12800.1
Unique Nameprot_H-elongata_contig54296.12800.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length41
Homology
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BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Match: A0A6H5L1C1_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1C1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.720e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQ 37
            QID FT+PTLK FLKSRG++  GKKGDLV RV+QALQ
Sbjct:  589 QIDRFTVPTLKSFLKSRGMSATGKKGDLVARVQQALQ 625
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BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Match: A0A0M0JFS2_9EUKA (X-ray repair cross-complementing protein 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFS2_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:    1 QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQK 38
            +++SFT+PTLK F K+ GL +GGKKGDLV RV   L+K
Sbjct:  637 RLESFTIPTLKEFCKANGLPVGGKKGDLVARVHDWLEK 674
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1C1_9PHAE2.720e-975.68SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0M0JFS2_9EUKA1.420e-660.53X-ray repair cross-complementing protein 6 n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 2..36
e-value: 3.0E-6
score: 36.8
IPR003034SAP domainPFAMPF02037SAPcoord: 3..36
e-value: 2.2E-10
score: 40.1
IPR003034SAP domainPROSITEPS50800SAPcoord: 2..36
score: 10.725
IPR036361SAP domain superfamilyGENE3D1.10.720.30coord: 1..40
e-value: 1.1E-7
score: 33.4
IPR036361SAP domain superfamilySUPERFAMILY68906SAP domaincoord: 2..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54296contigH-elongata_contig54296:3247..3369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54296.12800.1mRNA_H-elongata_contig54296.12800.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54296 3247..3369 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54296.12800.1 ID=prot_H-elongata_contig54296.12800.1|Name=mRNA_H-elongata_contig54296.12800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQKEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR036361SAP_dom_sf