mRNA_H-elongata_contig101453.128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101453.128.1
Unique NamemRNA_H-elongata_contig101453.128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.250e-20
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.720e-20
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SL+ILRK  G G+ +  ++S CGVC +GK +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:  303 LVSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLL 407
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.750e-20
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++RS QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:  235 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLL 339
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:  415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 519
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.250e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            +  A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S H+++R  QL   D MGP  P      G + Y  KITD++ K+    L+
Sbjct:   39 LVTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.260e-19
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ F  ++S CGVC + K +Q  HPK S  +++R  QL   D +GP  P      G + Y  KITD+Y KV    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.130e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.290e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.310e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
[Close]
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.360e-19
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:   79 VANAQVWHRRLDHLHAQSLDILRKRYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGPFTPVTI---GGYKYVSKITDEYKKVDRRLLV 384
            + +A  WHRRL HL+A+SLDILRK  G G+ +  ++S CGVC + K +Q  HPK S  +++R  QL   D MGP  P      G + Y  KITD+Y K+    L+
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLL 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101453.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ34_9PHAE1.250e-2043.81Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KP59_9PHAE2.720e-2043.81CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JSL6_9PHAE6.750e-2044.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE1.210e-1943.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFQ6_9PHAE1.250e-1943.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.260e-1944.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE2.130e-1943.81Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5K500_9PHAE2.290e-1943.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE2.310e-1943.81Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJR8_9PHAE2.360e-1943.81Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101453contigH-elongata_contig101453:48..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog225117.XP_009362851.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.2040188-CDS-H-elongata_contig101453:47..4401622929554.2040188-CDS-H-elongata_contig101453:47..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101453 48..440 -
1691679067.5834594-CDS-H-elongata_contig101453:47..4401691679067.5834594-CDS-H-elongata_contig101453:47..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101453 48..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101453.128.1prot_H-elongata_contig101453.128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101453 48..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101453.128.1

>prot_H-elongata_contig101453.128.1 ID=prot_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
ESGNLYLFVLDLSADGNGAKEIAMNVVANAQVWHRRLDHLHAQSLDILRK
RYGIGITFEGAVSDCGVCAVGKAQQPVHPKTSNHKVNRSFQLCYGDLMGP
FTPVTIGGYKYVSKITDEYKKVDRRLLVDF*
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mRNA from alignment at H-elongata_contig101453:48..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101453.128.1 ID=mRNA_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig101453:48..440- (Himanthalia elongata Himel1 dioecious)
GAGAGCGGCAACCTCTACTTGTTCGTGCTGGACTTGAGCGCGGATGGAAA
TGGTGCCAAGGAGATAGCAATGAACGTAGTCGCAAATGCCCAGGTGTGGC
ACCGACGGCTGGATCATCTCCATGCGCAGAGCCTGGATATTCTACGCAAG
CGATACGGCATTGGCATCACCTTCGAGGGGGCTGTCTCGGACTGCGGCGT
TTGCGCTGTGGGGAAGGCTCAACAGCCTGTTCATCCTAAGACGTCCAATC
ACAAGGTCAACCGGTCTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCC
TTCACGCCTGTGACCATAGGCGGCTACAAGTACGTCAGCAAAATAACCGA
TGAGTACAAAAAAGTGGACCGCCGTCTACTCGTTGACTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig101453:48..440-

>mRNA_H-elongata_contig101453.128.1 ID=mRNA_H-elongata_contig101453.128.1|Name=mRNA_H-elongata_contig101453.128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig101453:48..440- (Himanthalia elongata Himel1 dioecious)
GAGAGCGGCAACCTCTACTTGTTCGTGCTGGACTTGAGCGCGGATGGAAA
TGGTGCCAAGGAGATAGCAATGAACGTAGTCGCAAATGCCCAGGTGTGGC
ACCGACGGCTGGATCATCTCCATGCGCAGAGCCTGGATATTCTACGCAAG
CGATACGGCATTGGCATCACCTTCGAGGGGGCTGTCTCGGACTGCGGCGT
TTGCGCTGTGGGGAAGGCTCAACAGCCTGTTCATCCTAAGACGTCCAATC
ACAAGGTCAACCGGTCTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCC
TTCACGCCTGTGACCATAGGCGGCTACAAGTACGTCAGCAAAATAACCGA
TGAGTACAAAAAAGTGGACCGCCGTCTACTCGTTGACTTCTAAGAGAGCG
GCAACCTCTACTTGTTCGTGCTGGACTTGAGCGCGGATGGAAATGGTGCC
AAGGAGATAGCAATGAACGTAGTCGCAAATGCCCAGGTGTGGCACCGACG
GCTGGATCATCTCCATGCGCAGAGCCTGGATATTCTACGCAAGCGATACG
GCATTGGCATCACCTTCGAGGGGGCTGTCTCGGACTGCGGCGTTTGCGCT
GTGGGGAAGGCTCAACAGCCTGTTCATCCTAAGACGTCCAATCACAAGGT
CAACCGGTCTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACGC
CTGTGACCATAGGCGGCTACAAGTACGTCAGCAAAATAACCGATGAGTAC
AAAAAAGTGGACCGCCGTCTACTCGTTGACTTCTAA
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