mRNA_H-elongata_contig11624.1280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11624.1280.1
Unique NamemRNA_H-elongata_contig11624.1280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: D7G9F7_ECTSI (DA1-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F7_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.230e-93
Identity = 144/239 (60.25%), Postives = 172/239 (71.97%), Query Frame = 1 
Query:   10 TNEDEALARRLHEQWISEDTAAGGGVGRAGNILQFPDGFV-KLHGNPSISNGVRICAGCGHPIMERTFKHGP-GGIYHAACLPTMAPDLPPCSVCHNNLPMENGRIHFYRHNYFNDLYCPWHHDNTPRCYSCMRLEP-DAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAEV 717
            T EDEALARRL EQW+ E+ A  GG G  G   Q+P G + ++ G    + GVRICAGC  PI +  F+ G  G  +H  C+P     LP C VCH  LP ++GR+HFYRHN+F+++YCPWHHD++PRC SCMRLEP    PG G EGPFAEL DGRM+CM CA+TAVVDS+EG+PAFQ+VC F E  L LPV  EMR  P+LVVDSPTLNEQTH D  HG G E G+PTTRGLTL+EV
Sbjct:  141 TVEDEALARRLQEQWLLENAADRGGGGFGG---QWPGGGIGRISGKRPSAPGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRVHFYRHNFFHEVYCPWHHDSSPRCCSCMRLEPMPHPPGKGGEGPFAELSDGRMLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSEKGMPTTRGLTLSEV 376
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A6H5KFR7_9PHAE (DA1-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR7_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 6.610e-90
Identity = 141/242 (58.26%), Postives = 170/242 (70.25%), Query Frame = 1 
Query:   16 EDEALARRLHEQWISEDTAAGGGVG-----RAGNILQFPDGFV-KLHGNPSISNGVRICAGCGHPIMERTFKHGP-GGIYHAACLPTMAPDLPPCSVCHNNLPMENGRIHFYRHNYFNDLYCPWHHDNTPRCYSCMRLEPDAKPGG-GEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAEV 717
            EDEALARRL +QW+SE+ A  GG G           Q+P G +    G    + GVRICAGC  PI +  F+ G  G  +H  C+P     LP C VCH  LP ++GRIHFYRHN+F+++YCPWH+D++PRCYSCMRLEP  +P G G EG FAEL DGR++CM CA+TAVVDS+EG+PAFQ+VC F E  L LPV  EMR  P+LVVDSPTLNEQTH D  HG G E G+PTTRGLTL+EV
Sbjct:  203 EDEALARRLQDQWLSENAAGPGGGGFXXXXXXXXXXQWPGGGIGHFSGKGPSALGVRICAGCSMPITDAVFRQGAMGESFHMGCMPGGESPLPACKVCHERLPAQDGRIHFYRHNFFHEVYCPWHNDSSPRCYSCMRLEPMPQPTGKGGEGAFAELSDGRVLCMACAQTAVVDSSEGAPAFQEVCTFFEKVLNLPVSNEMRGSPVLVVDSPTLNEQTHLDQKHGAGSEKGMPTTRGLTLSEV 444
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: D8SI95_SELML (LIM zinc-binding domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SI95_SELML)

HSP 1 Score: 105 bits (261), Expect = 1.770e-22
Identity = 79/258 (30.62%), Postives = 114/258 (44.19%), Query Frame = 1 
Query:   10 TNEDEALARRLHEQWISEDTAAGGGV-------GRAGNILQFPDGFVKLHGNPSISNGVRI-------------CAGCGHPIMERTFKHGPGGIYHAACLPTMAPDLPPCSVCHNNLPME-NGRIHFYRHNYFNDLYCPWHHD-NTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREVPILVVDSPTLNE-QTHRDTSHGGGKEIGIPTTRGLTLAE 714
            T+ DEALAR L E +ISE  +            G  G   +F    V      +I  G  +             C  C  PI    F       YH  C   +    P C VC+  +P   +G I +  H ++   YCP H D NTPRC SC RLE        +   +  L DGR +C+ C  +AV+D+ EG P +Q++ +F E   +    +  +++P+L+V+   LNE + H    H       +  TRGLTL+E
Sbjct:   54 TDNDEALARALQESFISEGPSGFSSXXXXXXPFGGDGRTRRFSGAHVCARCKKTIGPGRFLSCMGGLWHPECFRCTSCNKPISGSEFSVSGNDPYHKDCYKELF--HPRCDVCNLFIPPNYSGLIEYRVHPFWGQRYCPSHEDDNTPRCCSCERLET-------KNNKYVVLDDGRKLCLECMDSAVMDTNEGQPLYQEIINFYEGMNM----KITQQIPMLLVERQALNEARAHESNGHH------LTETRGLTLSE 292
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: E1ZGR9_CHLVA (LIM zinc-binding domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGR9_CHLVA)

HSP 1 Score: 100 bits (250), Expect = 2.130e-21
Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 1 
Query:  160 GVRICAGCGHPIMER---TFKHGPGGIYHAACLPTMAPDLPPCSVCHNNLPME-NGRIHFYRHNYFNDLYCPWH-HDNTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDF-LELELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIG-IPTTRGLTLAE 714
            G  +CAGC  PI +R    F    G +YH  C    A   P C VC +  P E + RI +    ++   +CP H HD TPRC SC RL P A     +   +AEL+DGR VC+ C  T   D+ +  P + +V  F + + + LPV       P+++VDS  LNE   ++T  G G+  G +   RGLTL E
Sbjct:   19 GCLVCAGCHRPIGDRGGVPFCEREGRLYHLDC--HRAKFHPKCDVCGDYCPEEAHRRIVWSEVAFWRQRFCPHHIHDGTPRCASCERLRPHA-----QADTWAELEDGRQVCLPCLGTITTDTRDAQPLWHNVLSFYVGMGMPLPV-----VPPMMLVDSGALNEAEGQET-RGKGRGAGPVFHVRGLTLTE 197
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A2K3MNE0_TRIPR (Protein DA1-like n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MNE0_TRIPR)

HSP 1 Score: 102 bits (253), Expect = 2.780e-21
Identity = 81/250 (32.40%), Postives = 112/250 (44.80%), Query Frame = 1 
Query:   16 EDEALARRLHEQW-ISEDTAAGGGVGRAGNILQFPDGFVKLHG-NPSISNGVRI-------------CAGCGHPIMERTFKHGPGGIYHAACLPTMAPDLPPCSVCHNNLPMEN-GRIHFYRHNYFNDLYCPWH-HDNTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAE 714
            EDE LAR + E   +      G  +     I  FP G+    G N  I  G  +             C  C  PI +  F       YH AC        P C VC + +P    G I +  H ++N  YCP H HDNTPRC SC R+EP    G G    +  L+DGR +C+ C  ++++D+ E  P   D+  F E   +    R  ++VP+L+V+   LNE   R+    G     +P TRGL L+E
Sbjct:   87 EDEQLARAIEESLNVESPPKHGNDINMYQPIQYFPMGYRICAGCNVEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESY--HPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQ---GTG----YIALKDGRKLCLECLDSSIMDTNECQPLHADILKFYESINM----RLDQQVPLLLVERQALNEA--REGEKNG--HYHMPETRGLCLSE 319
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A7S3UVT4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVT4_HETAK)

HSP 1 Score: 95.1 bits (235), Expect = 3.590e-21
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:  181 CGHPIMERTFKHGPGGIYHAACLPTMAPDL--PPCSVCHNNLPMENG--RIHFYRHNYFND-LYCPWH-HDNTPRCYSCMRLEPDA-KPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELEL 567
            CG  I   TF+   G +YH  C    A +L  P C+VC   +P + G   + + RH +F D   CP H  D T RC +C R E  A  PGGG  G FA+LQDGR +C+ CA+T +VDSAE  P ++++  + E EL
Sbjct:    1 CGRLIDTPTFRPYEGRLYHPQC----ALELFHPRCNVCGQGIPADPGSREVKYIRHPFFQDEKACPAHARDGTARCCACQRFERRAGAPGGG--GAFADLQDGRKLCLACARTPLVDSAEARPLYEEILLWFETEL 130
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: UPI001FB14F4B (protein DA1-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB14F4B)

HSP 1 Score: 100 bits (250), Expect = 6.380e-21
Identity = 68/219 (31.05%), Postives = 101/219 (46.12%), Query Frame = 1 
Query:  145 PSISNGVRICAGCGHPIMERTFKHGPGGIYHAACLPTMAPDLP-------------------------PCSVCHNNLPMENGRIHFYR-HNYFNDLYCPWH--HDNTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLE-LELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAE 714
            P  S G RIC GC   I    F +  GGI+H  C      + P                          C VC   +P   G +  YR H ++   YCP H  HD TPRC SC R+EP       ++  + +L DGR +C+ C  + ++D+ +  P + D+ +F E L++     +  ++VP+L+V+ P LNE    +  HG      +P TRGL L+E
Sbjct:  105 PLHSVGFRICTGCNREIGHGRFLNCIGGIWHPECFRCHRCNFPISDYEFSISGGYPYHKSCYKEHYHPKCDVCKQFIPTNGGGLIEYRAHPFWVQKYCPIHEHHDGTPRCCSCERMEP-------QDTTYVDLDDGRKICLECLDSVIMDTNQCQPLYIDIQEFYESLDM-----KVEQQVPLLLVERPALNEAMDGE-KHGHHH---MPETRGLCLSE 307
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A072VEP2_MEDTR (Zinc ion-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VEP2_MEDTR)

HSP 1 Score: 97.1 bits (240), Expect = 3.750e-20
Identity = 80/250 (32.00%), Postives = 110/250 (44.00%), Query Frame = 1 
Query:   16 EDEALARRLHEQWISEDTAAGGGVGRAGNILQFPDGFVKLHG-NPSISNGVRI-------------CAGCGHPIMERTFKHGPGGIYHAACLPTMAPDLPPCSVCHNNLPMEN-GRIHFYRHNYFNDLYCPWH-HDNTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLE-LELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAE 714
            EDE LAR + E    E     G       I  FP G+    G N  I  G  +             C  C  PI +  F       +H AC        P C VC + +P    G I +  H ++N  YCP H HDNT RC SC R+EP    G G    +   +DGR +C+ C  +A++D+ E  P   D+  F E + + L      ++VP+L+V+   LNE   R+    G     +P TRGL L+E
Sbjct:   72 EDEQLARAIEESLNLESPPKHGNDNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPFHKACYKESY--HPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTARCCSCERMEPQ---GTG----YIAHKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKL-----NQQVPLLLVERQALNEA--REGEKNG--HYHMPETRGLCLSE 303
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A218Y3R1_PUNGR (LIM zinc-binding domain-containing protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218Y3R1_PUNGR)

HSP 1 Score: 98.2 bits (243), Expect = 5.910e-20
Identity = 68/231 (29.44%), Postives = 106/231 (45.89%), Query Frame = 1 
Query:  127 VKLHGNPSISNGVRICAGCGHPI-MERTFKHGPGGIYHAACLPTMAPDL-------------------------PPCSVCHNNLPMENGRIHFYRHNYFNDLYCPWHH-DNTPRCYSCMRLEPDAKPGGGEEGPFAELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDF---LELELLLPVPREMREVPILVVDSPTLNEQTHRDTSHGGGKEIG---IPTTRGLTLAEVR 720
            +++   PS S+  R C GC + I  E       GG++H  CL   A +L                         P C VC N LP   G   +  H+++   YCP H  DNTPRC SC R+EP        +  +  L DGR +C+ C  +A++DS E  P + ++ +F   L++E+        + +P+L+V+   LN+          G++ G   +P TRG+ L+E R
Sbjct:  105 IQISPLPSTSSD-RFCKGCKNQIGQEGQSLRCMGGVWHRDCLKCQACNLLITDKVSMSSEDRLFHESCYKEHHHPKCDVCKNFLPRSTGAAEYRAHHFWMQKYCPSHEQDNTPRCCSCERMEP-------RDMQYMILDDGRRLCLECLSSAIMDSEESKPLYDEIREFYKDLDMEV-------KQHIPLLLVERQALNKAME-------GEKNGHHHLPETRGICLSEER 313
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BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Match: A0A7S1GMF0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMF0_CYCTE)

HSP 1 Score: 97.8 bits (242), Expect = 7.040e-20
Identity = 65/192 (33.85%), Postives = 96/192 (50.00%), Query Frame = 1 
Query:  172 CAGCGH------PIMERTFKHGPGGIYHAACLPTMAPDLPPCSVCHNNLPM-ENGRIHFYRHNYFN-DLYCPWHHDNTPR-CYSCMRLEPDAKPGGGEEGPFAELQD-GRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREVPILVVDSPTLNEQTHRDTS-HGGGKEIGIPTTRGLTLAE 714
            C GC +      P    T + G     H  C   +      C+VC  ++P   +G++ F +H +F+ +  CP H     R C  C R EP+ +P       FA+L D GR VC  C ++ +VDS +  P +  V  FLE +L LP+ +++R+VPIL+V    LN+Q     + HGG  +I    TRGL L E
Sbjct:   95 CVGCHNTIDSSGPFAYMTDERGDKHPLHRKCYAELYGVK--CAVCRKSIPAGPDGKVSFVKHPFFDSEQMCPRHAQRPGRRCTGCHRFEPEGQP-------FADLNDAGRCVCYACCRSVIVDSEDAQPLWDKVVAFLETKLHLPIWKDLRKVPILIVGYEALNDQMRTTRAVHGGSSQI---MTRGLCLTE 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11624.1280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9F7_ECTSI2.230e-9360.25DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KFR7_9PHAE6.610e-9058.26DA1-like domain-containing protein n=1 Tax=Ectocar... [more]
D8SI95_SELML1.770e-2230.62LIM zinc-binding domain-containing protein n=4 Tax... [more]
E1ZGR9_CHLVA2.130e-2136.98LIM zinc-binding domain-containing protein n=1 Tax... [more]
A0A2K3MNE0_TRIPR2.780e-2132.40Protein DA1-like n=2 Tax=Trifolium pratense TaxID=... [more]
A0A7S3UVT4_HETAK3.590e-2141.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001FB14F4B6.380e-2131.05protein DA1-like n=1 Tax=Impatiens glandulifera Ta... [more]
A0A072VEP2_MEDTR3.750e-2032.00Zinc ion-binding protein n=1 Tax=Medicago truncatu... [more]
A0A218Y3R1_PUNGR5.910e-2029.44LIM zinc-binding domain-containing protein n=3 Tax... [more]
A0A7S1GMF0_CYCTE7.040e-2033.85Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11624contigH-elongata_contig11624:4108..8620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue1.8e-77
Seed eggNOG ortholog2880.D7G9F7
Preferred namerga1
KEGG koko:K17964
GOsGO:0000003,GO:0000131,GO:0000278,GO:0000281,GO:0000746,GO:0000747,GO:0000755,GO:0000910,GO:0000917,GO:0003006,GO:0003674,GO:0003824,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006109,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008285,GO:0008360,GO:0009266,GO:0009272,GO:0009409,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0009966,GO:0009968,GO:0009987,GO:0010087,GO:0010088,GO:0010154,GO:0010556,GO:0010646,GO:0010648,GO:0010675,GO:0010962,GO:0010981,GO:0016020,GO:0016043,GO:0016787,GO:0019222,GO:0019538,GO:0019904,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022622,GO:0023051,GO:0023057,GO:0030016,GO:0030017,GO:0030029,GO:0030036,GO:0030234,GO:0030427,GO:0030695,GO:0031323,GO:0031326,GO:0031430,GO:0031672,GO:0032182,GO:0032501,GO:0032502,GO:0032505,GO:0032506,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0032952,GO:0032953,GO:0032995,GO:0035023,GO:0035024,GO:0035670,GO:0040008,GO:0042127,GO:0042546,GO:0042995,GO:0043085,GO:0043087,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043292,GO:0043332,GO:0043547,GO:0044085,GO:0044087,GO:0044093,GO:0044238,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0045926,GO:0046578,GO:0046580,GO:0046620,GO:0046621,GO:0048316,GO:0048317,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048445,GO:0048467,GO:0048481,GO:0048482,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048638,GO:0048640,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051093,GO:0051094,GO:0051128,GO:0051179,GO:0051239,GO:0051240,GO:0051241,GO:0051286,GO:0051301,GO:0051336,GO:0051345,GO:0051641,GO:0051666,GO:0051704,GO:0055120,GO:0060237,GO:0060255,GO:0060589,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0080090,GO:0090036,GO:0090038,GO:0090334,GO:0090529,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0098772,GO:0099080,GO:0099081,GO:0099402,GO:0099512,GO:0120025,GO:0120038,GO:0140096,GO:1900055,GO:1900057,GO:1901564,GO:1902410,GO:1902531,GO:1902532,GO:1903047,GO:1903338,GO:1905392,GO:1905623,GO:2000024,GO:2000026,GO:2000112
EggNOG free text desc.actinin binding
EggNOG OGsKOG1703@1,KOG1703@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein DA1 like
Ec32 orthologEc-28_000760.1
Exons6
Model size726
Cds size726
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11624.1280.1prot_H-elongata_contig11624.1280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11624 4108..8620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.5893505-CDS-H-elongata_contig11624:4107..42061622929675.5893505-CDS-H-elongata_contig11624:4107..4206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 4108..4206 +
1691679115.3082595-CDS-H-elongata_contig11624:4107..42061691679115.3082595-CDS-H-elongata_contig11624:4107..4206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 4108..4206 +
1622929675.602133-CDS-H-elongata_contig11624:4532..47151622929675.602133-CDS-H-elongata_contig11624:4532..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 4533..4715 +
1691679115.3260958-CDS-H-elongata_contig11624:4532..47151691679115.3260958-CDS-H-elongata_contig11624:4532..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 4533..4715 +
1622929675.6197834-CDS-H-elongata_contig11624:5388..54831622929675.6197834-CDS-H-elongata_contig11624:5388..5483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 5389..5483 +
1691679115.3394516-CDS-H-elongata_contig11624:5388..54831691679115.3394516-CDS-H-elongata_contig11624:5388..5483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 5389..5483 +
1622929675.6373825-CDS-H-elongata_contig11624:6221..63391622929675.6373825-CDS-H-elongata_contig11624:6221..6339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 6222..6339 +
1691679115.3495245-CDS-H-elongata_contig11624:6221..63391691679115.3495245-CDS-H-elongata_contig11624:6221..6339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 6222..6339 +
1622929675.6546588-CDS-H-elongata_contig11624:7286..74061622929675.6546588-CDS-H-elongata_contig11624:7286..7406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 7287..7406 +
1691679115.3600323-CDS-H-elongata_contig11624:7286..74061691679115.3600323-CDS-H-elongata_contig11624:7286..7406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 7287..7406 +
1622929675.6758158-CDS-H-elongata_contig11624:8509..86201622929675.6758158-CDS-H-elongata_contig11624:8509..8620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 8510..8620 +
1691679115.368573-CDS-H-elongata_contig11624:8509..86201691679115.368573-CDS-H-elongata_contig11624:8509..8620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11624 8510..8620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11624.1280.1

>prot_H-elongata_contig11624.1280.1 ID=prot_H-elongata_contig11624.1280.1|Name=mRNA_H-elongata_contig11624.1280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
RRPTNEDEALARRLHEQWISEDTAAGGGVGRAGNILQFPDGFVKLHGNPS
ISNGVRICAGCGHPIMERTFKHGPGGIYHAACLPTMAPDLPPCSVCHNNL
PMENGRIHFYRHNYFNDLYCPWHHDNTPRCYSCMRLEPDAKPGGGEEGPF
AELQDGRMVCMTCAKTAVVDSAEGSPAFQDVCDFLELELLLPVPREMREV
PILVVDSPTLNEQTHRDTSHGGGKEIGIPTTRGLTLAEVRG*
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mRNA from alignment at H-elongata_contig11624:4108..8620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11624.1280.1 ID=mRNA_H-elongata_contig11624.1280.1|Name=mRNA_H-elongata_contig11624.1280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4513bp|location=Sequence derived from alignment at H-elongata_contig11624:4108..8620+ (Himanthalia elongata Himel1 dioecious)
AGAAGGCCGACGAACGAGGACGAAGCGCTCGCCAGGCGCTTGCACGAGCA
ATGGATCTCCGAGGATACCGCTGCAGGAGGAGGGGTAGGTCGGGCAGGTG
TGGACGAAGGGGCCATGTCGGAGGATGGCGTCTCATGTTGATCCACCGAC
ATTGGTCAACGCTCGCGTGTAGAGTTTTGCCTAGGTCGCGGCGTGTCATT
TCGTCTTCTTGTTTGCTTGTTAATATTCTAGGCAGAGGAATTCTGGGAGA
TATTTGGGACACCACGCGAAGCCAGAATGCGTTTGGATTATAGGCTGAAG
TAATTCTTAAGCGGCCATCTTGACTCCACGATGCGATACCAAGATAAATT
ATTAAGCGTCGCACCGCCTGTTCGATTCCCCACCCAATTCCAACTTTTCG
ACATGTTCCACTTTTTTACTCCCAGAATATTTTGCAGTTTCCAGACGGCT
TCGTGAAACTGCACGGTAACCCTTCCATCTCGAACGGCGTTCGCATCTGC
GCCGGCTGCGGCCACCCTATAATGGAGCGCACGTTTAAGCATGGCCCGGG
GGGCATCTATCACGCGGCTTGCTTGCCGACGATGGCGCCCGATCTTCCCC
CCTGCAGCGTACGTCGAGCATAATAAACGGCTTTGGAGGAGTGTAGAAGG
GAGGCAGCGTGATTTTGTTGATTCGTACCAGTTACAGTATAGGTAGAGCC
CTTCCCGAAACTCGTTTACACGTAACGTGTTAGTTTTCCCTCTTCTTGTA
CAGTCCACTCTCTAGGCTATACTATAGGCTATACTATAGCTCTGGTTTGG
CGCCATAGTCCCCATATAAATGAATAATGTAAAGTGTACGGGATAATAAT
GGGATATCATCCCTGACATTATACCGTTGACCCGATGAACTTGCTATGAT
AATTGGGGAACACGATTTACCAATCTCATGTATAGTTATGTGACCATTTC
CTGCTCAAAGGGTATTAATGACGTCACATTCGAACCTGACAATAGTTGGG
TCGGTCTCCTGGGTTGCACCCCTTACGGTGCTAAGAAGGCGTGGGTGTTC
GGAGGGTTGGAATGTGAGTTCATTTATTTATTTTTTAAGAGAAGTATACC
TTATATACCTTCTCACCGACCGCGCACCGGGGGTTTCTTTCCGCGCCTCC
CTTTTTGCTGCATATTTATAAACGGAGGTTATTATCTTTCCCACGAAGAA
TGCGGTGCTCTCGCTGTGCTGCGTTATAATGCCGTTGGATGCCATGCTAT
GCCGTATGTGTGCGGGTATGTATGCGGGCAGGTGTGTCACAATAACTTGC
CTATGGAGAATGGCAGGATTCATTTCTATCGGCACAATTACTTCAACGAC
CTCTACTGCCCCTGGCACCACGACAAGTGAGCAAACGCGATACTACCATG
CTCCGTCTTAGGTGTACCACGAAATATACTGCCACGTTCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTTTACATACTGCCACTTAGGCGTCGGACAAA
TGTATGATGATATTACTGTAGTAGGAGCAACAACGGTCGCCCCCAGCCAG
CTGAGTATGCCTCCATGGCATGAGCTCGCATGTTATGCAAATCACGAGCG
GGATTAACCACCACATGGAAAGCAATATATTGAAACAGTTACAAACACAC
ACACACATACATATATATATATACTTACTTACAGTATTGCGCCGCGGAGA
CAAAATGATGGGCCGCTGACCCACATGGCCGAAGAACCGCTGACCATGCA
TACATAAATCTAGTAGTGCGGAGCTTTGCGCCCTACAATAGTTTCCGAAT
CCCCAGTGGACCTCGTATTGTGTCGGGTGCTATAGAAAACACTCAAGTAC
TGCATTGATATATAGTATGTAGTAAGAGTATTCAAGAAGCCCTCTTATTG
ATAGTACTTTTAAAGTGGTAAAAATACACGGCGTGACCAACCCCTTGGAG
GCGGGTGCTGGGCTTGGACCACCACCGAAGTATTTGGTTGCTACGGAAAG
CGCTCAAGGAAGCCGAAGGGTATTGATTGATGAGACGGACGTCTGTTTTG
CGTTCAATCTGCCTCTCAGCGCGACTCTCCCGAACCCTCCTTTGCCACTT
CCCCAACCAATCAGCACACCGCGGTGCTACAGCTGTATGCGACTGGAGCC
TGATGCCAAGCCCGGGGGAGGAGAGGAAGGGCCATTCGCTGAGCTTCAGG
ACGGTCGCATGGTGTGCATGACTTGTGCCAAGGTGTGCGGCTATTAATGG
TGACAGTGATATCGAATGGGTATTGGATCGGACGGTGCTGTTTTAAATCC
TGCTGACGCAAGCTGGCAGCAGCACACCAGCATCACCAGACCCGGATCTT
TATTGAATTGAATATCCGTCGAGCACAACCCGGAGCGCACTTGCAACCGT
TTGTTTACTTGTTGGAGTTCCACGTCTCTGCCCTGTCTGTGTCCTATTTG
TGTGTGTGGGTGTGTGTGTGTGTGTGTGTTTTGACTTTTTTCCTTTCGTT
AGATTTTTTTTTTCAAGTGTTAAACACTATTGCCGTTTCCTTTTGCATGG
AGAGTACCTTGAACATTTTTCCTTCCAAATTGTGTTTTTTTTATGCTTTT
GTGACCACGGGCTGGATTTTGACATAAGATTATGTGATAATTCAATCAAT
AAAAAATAAAATAAAAAATAAAAAATAAATAAAACGTATGTGGGGGGTGT
GGCAATAGTTTGACCTCAGTATTTCAGTAATAGTTCAAAATTGTTGAGGC
AGCAGCAGTCGTCCTCGCGTTAGGCGATTATGCCTTGCCTTGCCTTGCCT
GGGCGATAAAAGTGTCTTGTTTTGTCCGTCGACCGCAGTCATCTCTTTTT
GCCCCCACATGAGGAGACTCTCTGCGTGCTTCAGGCGTTGATTTGTTTTC
TTCTAAACCGCTATGTGCTGTACTGTGCTATTTTTTTTATTTAACAAGAT
ATTAACTCAATCATACCCTCCGAAAATCCACATTATATCCTATATACTAT
ATCCTATATAATTCTTAGCACACCGTGGGAGGTGTAGTAATCCAGGGGAC
CAACTATCGTCAGGTTCGAATGTCAACATTACTACCTTTTGAGCACAAAA
TCGTCACATACATGTGATAAATGTACTAATACTATAATAAGTATTAATCT
AATGTTTCCGCCGTGCATCCTCTGTACAGACGGCAGTGGTTGATTCCGCG
GAGGGATCCCCCGCATTCCAAGACGTATGCGACTTCCTGGAGCTGGAGCT
ACTGCTGCCGGTGCCGAGGGAGATGCGTGAGGTGCCTATCCTCGTTGTGG
TGAGAAGGGTCGCTAACGTCGAGACGTCCCAAAACCATATTCGAATGTAG
TAATATCATGCTATTGTGTAAAGAATAATGAAAAGTGTACGGGATAATGA
TGATAATTGGATCCCTGGCGTTGTTATTCCGTTGACCCGATGAATTTACG
ACAGTATTGGAGAACACGGTTAATTCTTATTTCACATGTGTGTGTCATGA
TTTTGTGCTCAAAGGTAGTAATGTTGACATTCGAACCTGACCATCGTTGG
TCCCCTGGACTGCACCTCTCACGGTGCTAAGAAGGCGTGTATGTTCGGAG
GGTTGGAACTAGTTCATATGTATATTTATGTATAATTTCAATAGAAAATA
AAAACGTGAGAGAAACCAACGAGATTTATTACTTCAGCTTTGGGCGATGT
ATTTAAACAATTATAAACCTTGGAATTATATCCAAAATGCCAAGAGTTTA
TATGTAATTAATTAAATCTCTTCTCCGAATTAGTCTTTTGCATCTTTGGT
GAGACTGTTTTTTGTACCGTGGATTTTGCCGAACCACCTTCGAGATTATT
ATCGAAAGCATAACCATCGATAGCATCGTCTTGTCTTGGCACTCGTCAGT
TTACCACGGCATTTACAGTCGAAGTTTTCCGTGAGCTGATTTTGTTTCGG
TGGTAGGTAGACTACAGGGCTAAGTTACTATATCCGGGGGGTAATGGGGG
TTTCCTCGCCTTTGGCTCCTCCTCTCCTTCCCTCCCAGCTGGCGTGACGT
CACGTGAAGTGACATGCCACCGCCTCAGGCAGGTGTTGTATTCCTGCCAT
TTTAGTGCCCTCGAAAAAAATTGGGCAAGTGACGGACGATTGCGATGCAA
ACCTTTTACCGATAGAGAGAACACTGTTAGTATTAATAACAGAGGCTCCA
CAATACTATATACTACATACTATATACTATATGTTATATACTAAATACTA
TATACTATTTACTATATACTGTATACTATTTACTGTATACTATATACTCT
ATACTAGGGATTTGTATACCGTATTGGCGTGACCCACCCCCCTTTTTACT
ATGTTGCCCGGCGCGCTTACGCCGCTGGACCATGCAATATTGGCTGTTTC
AGGATTCGCCGACGCTGAACGAGCAGACGCACCGTGATACGTCGCACGGG
GGCGGAAAGGAGATCGGCATCCCGACCACACGAGGGCTGACGCTAGCCGA
GGTACGAGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig11624:4108..8620+

>mRNA_H-elongata_contig11624.1280.1 ID=mRNA_H-elongata_contig11624.1280.1|Name=mRNA_H-elongata_contig11624.1280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig11624:4108..8620+ (Himanthalia elongata Himel1 dioecious)
AGAAGGCCGACGAACGAGGACGAAGCGCTCGCCAGGCGCTTGCACGAGCA
ATGGATCTCCGAGGATACCGCTGCAGGAGGAGGGGTAGGTCGGGCAGGTA
GAAGGCCGACGAACGAGGACGAAGCGCTCGCCAGGCGCTTGCACGAGCAA
TGGATCTCCGAGGATACCGCTGCAGGAGGAGGGGTAGGTCGGGCAGGTAA
TATTTTGCAGTTTCCAGACGGCTTCGTGAAACTGCACGGTAACCCTTCCA
TCTCGAACGGCGTTCGCATCTGCGCCGGCTGCGGCCACCCTATAATGGAG
CGCACGTTTAAGCATGGCCCGGGGGGCATCTATCACGCGGCTTGCTTGCC
GACGATGGCGCCCGATCTTCCCCCCTGCAGCAATATTTTGCAGTTTCCAG
ACGGCTTCGTGAAACTGCACGGTAACCCTTCCATCTCGAACGGCGTTCGC
ATCTGCGCCGGCTGCGGCCACCCTATAATGGAGCGCACGTTTAAGCATGG
CCCGGGGGGCATCTATCACGCGGCTTGCTTGCCGACGATGGCGCCCGATC
TTCCCCCCTGCAGCGTGTGTCACAATAACTTGCCTATGGAGAATGGCAGG
ATTCATTTCTATCGGCACAATTACTTCAACGACCTCTACTGCCCCTGGCA
CCACGACAAGTGTGTCACAATAACTTGCCTATGGAGAATGGCAGGATTCA
TTTCTATCGGCACAATTACTTCAACGACCTCTACTGCCCCTGGCACCACG
ACAACACACCGCGGTGCTACAGCTGTATGCGACTGGAGCCTGATGCCAAG
CCCGGGGGAGGAGAGGAAGGGCCATTCGCTGAGCTTCAGGACGGTCGCAT
GGTGTGCATGACTTGTGCCAAGCACACCGCGGTGCTACAGCTGTATGCGA
CTGGAGCCTGATGCCAAGCCCGGGGGAGGAGAGGAAGGGCCATTCGCTGA
GCTTCAGGACGGTCGCATGGTGTGCATGACTTGTGCCAAGACGGCAGTGG
TTGATTCCGCGGAGGGATCCCCCGCATTCCAAGACGTATGCGACTTCCTG
GAGCTGGAGCTACTGCTGCCGGTGCCGAGGGAGATGCGTGAGGTGCCTAT
CCTCGTTGTGACGGCAGTGGTTGATTCCGCGGAGGGATCCCCCGCATTCC
AAGACGTATGCGACTTCCTGGAGCTGGAGCTACTGCTGCCGGTGCCGAGG
GAGATGCGTGAGGTGCCTATCCTCGTTGTGGATTCGCCGACGCTGAACGA
GCAGACGCACCGTGATACGTCGCACGGGGGCGGAAAGGAGATCGGCATCC
CGACCACACGAGGGCTGACGCTAGCCGAGGTACGAGGCTAAGATTCGCCG
ACGCTGAACGAGCAGACGCACCGTGATACGTCGCACGGGGGCGGAAAGGA
GATCGGCATCCCGACCACACGAGGGCTGACGCTAGCCGAGGTACGAGGCT
AA
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