mRNA_H-elongata_contig5428.12798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5428.12798.1
Unique NamemRNA_H-elongata_contig5428.12798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5428.12798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5428contigH-elongata_contig5428:7021..8534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1445
Cds size1269
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5428.12798.1prot_H-elongata_contig5428.12798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5428 7065..8402 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.0387585-UTR-H-elongata_contig5428:7020..70641622930884.0387585-UTR-H-elongata_contig5428:7020..7064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5428 7021..7064 +
1691679610.8988266-UTR-H-elongata_contig5428:7020..70641691679610.8988266-UTR-H-elongata_contig5428:7020..7064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5428 7021..7064 +
1622930884.081038-UTR-H-elongata_contig5428:8402..85341622930884.081038-UTR-H-elongata_contig5428:8402..8534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5428 8403..8534 +
1691679610.9272993-UTR-H-elongata_contig5428:8402..85341691679610.9272993-UTR-H-elongata_contig5428:8402..8534Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5428 8403..8534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.0542724-CDS-H-elongata_contig5428:7064..73241622930884.0542724-CDS-H-elongata_contig5428:7064..7324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5428 7065..7324 +
1691679610.9074416-CDS-H-elongata_contig5428:7064..73241691679610.9074416-CDS-H-elongata_contig5428:7064..7324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5428 7065..7324 +
1622930884.067137-CDS-H-elongata_contig5428:7393..84021622930884.067137-CDS-H-elongata_contig5428:7393..8402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5428 7394..8402 +
1691679610.9160511-CDS-H-elongata_contig5428:7393..84021691679610.9160511-CDS-H-elongata_contig5428:7393..8402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5428 7394..8402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5428.12798.1

>prot_H-elongata_contig5428.12798.1 ID=prot_H-elongata_contig5428.12798.1|Name=mRNA_H-elongata_contig5428.12798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp
MVNIKGKKCAAGECRKKPSFGVAGTRKPEYCADHALEDMINVVSKRCSDD
RCLKLASFAVAGSRTPEYCSKHALEGMAYVRNKICAAALEGMVYNRGNTC
AAGGCRKIASFGVAGRMKPEYCADHALEGMIDVVNKTCSDERCSKLPSFG
MVGSRTREYCAKHALEGMVSLTAKVCAADESPKNSTLGVAHSRKSDYCAS
DVCPKTPTITVIDNRKREYYTKHASEGMVNIEDKRCPAHGCTNLPSFKAD
GSKKQEYCGDHVSEGLVDLPSAKHSKIGRSELLRYGVTVSAKLDNSAEQS
MKKMVYTATNTWAGNDCPRRPSCGIPRREKRKFPAVDILKDTKACCRQAT
YGIADDGMRECCAEHALEGMVVVTQCEQESDRKRMPTVSPAVIVSRVTDV
SAPSPREVAHTDFVKLEISPPI*
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mRNA from alignment at H-elongata_contig5428:7021..8534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5428.12798.1 ID=mRNA_H-elongata_contig5428.12798.1|Name=mRNA_H-elongata_contig5428.12798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-elongata_contig5428:7021..8534+ (Himanthalia elongata Himel1 dioecious)
GCAGCAGGAAGTCTAAGTTCTGTAGTGACCACGCGTTGGAGGGAATGGTA
AATATAAAGGGAAAGAAATGTGCTGCTGGTGAATGCAGGAAGAAACCGAG
CTTCGGAGTTGCTGGCACAAGGAAGCCAGAGTACTGTGCCGACCATGCTC
TGGAGGATATGATCAATGTTGTAAGCAAGAGGTGTTCTGACGATAGGTGT
CTTAAGCTGGCGAGCTTCGCGGTGGCCGGCAGCCGAACACCCGAGTACTG
CAGTAAACACGCTTTGGAGGGGATGGCATATGTTAGGAACAAGATATGTG
CCGCGGATGGATGTACGAAAAGTTCGAGCTTCGGGGTGGCTGGCAGTAGT
AAGTCTGAGTTCTGTGGTGACCACGCGTTGGAAGGAATGGTTTATAATAG
GGGAAATACATGTGCCGCTGGTGGATGCAGGAAGATAGCGAGCTTCGGAG
TTGCTGGCAGAATGAAGCCGGAGTACTGTGCCGACCATGCTCTGGAGGGC
ATGATCGATGTTGTAAACAAGACGTGTTCTGACGAAAGGTGCTCTAAGCT
GCCAAGTTTCGGAATGGTCGGCAGCCGAACACGGGAATACTGTGCCAAAC
ATGCTTTGGAGGGCATGGTCAGTCTTACGGCAAAGGTATGTGCCGCCGAT
GAATCCCCCAAGAATTCGACGTTGGGAGTGGCTCACAGCCGGAAGTCGGA
CTACTGTGCTTCAGATGTGTGCCCTAAAACTCCAACCATTACGGTAATCG
ACAACCGGAAACGGGAGTACTACACTAAGCATGCTTCGGAGGGGATGGTC
AACATTGAGGACAAACGATGTCCCGCCCATGGATGCACTAATCTCCCGAG
CTTCAAGGCGGATGGCAGCAAGAAACAGGAGTACTGCGGGGATCATGTTT
CGGAGGGTCTGGTTGACCTTCCTTCCGCAAAGCATAGCAAGATTGGGCGT
TCTGAGCTACTTAGGTATGGGGTAACCGTCAGCGCCAAGTTGGATAACAG
CGCTGAACAATCTATGAAGAAAATGGTTTACACTGCTACAAATACATGGG
CCGGCAATGATTGCCCCAGGAGGCCGAGTTGTGGCATACCCCGTCGCGAA
AAGCGGAAGTTCCCCGCTGTGGATATTTTGAAAGACACCAAAGCATGTTG
TAGGCAAGCGACCTATGGTATAGCCGACGACGGGATGCGGGAGTGCTGTG
CTGAACATGCTTTGGAGGGCATGGTGGTTGTGACTCAATGTGAGCAGGAG
AGTGACAGGAAGCGGATGCCTACTGTCTCACCTGCAGTAATCGTTTCGAG
AGTAACTGACGTTAGCGCCCCCTCTCCCCGGGAAGTAGCACATACCGATT
TTGTGAAGCTAGAAATATCACCACCTATATAAGAATGATTTATTGAGCAG
CTAATTATTGCGGAAACAATACTGGCGAGAGATAGAGGGGACATGGCGCC
CGGGGAGGCCACGTCCCCATTATTGTTCCTTGAACATGTTTGGAGCCCGT
GTGCTCACTGTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig5428:7021..8534+

>mRNA_H-elongata_contig5428.12798.1 ID=mRNA_H-elongata_contig5428.12798.1|Name=mRNA_H-elongata_contig5428.12798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at H-elongata_contig5428:7021..8534+ (Himanthalia elongata Himel1 dioecious)
ATGGTAAATATAAAGGGAAAGAAATGTGCTGCTGGTGAATGCAGGAAGAA
ACCGAGCTTCGGAGTTGCTGGCACAAGGAAGCCAGAGTACTGTGCCGACC
ATGCTCTGGAGGATATGATCAATGTTGTAAGCAAGAGGTGTTCTGACGAT
AGGTGTCTTAAGCTGGCGAGCTTCGCGGTGGCCGGCAGCCGAACACCCGA
GTACTGCAGTAAACACGCTTTGGAGGGGATGGCATATGTTAGGAACAAGA
TATGTGCCGCATGGTAAATATAAAGGGAAAGAAATGTGCTGCTGGTGAAT
GCAGGAAGAAACCGAGCTTCGGAGTTGCTGGCACAAGGAAGCCAGAGTAC
TGTGCCGACCATGCTCTGGAGGATATGATCAATGTTGTAAGCAAGAGGTG
TTCTGACGATAGGTGTCTTAAGCTGGCGAGCTTCGCGGTGGCCGGCAGCC
GAACACCCGAGTACTGCAGTAAACACGCTTTGGAGGGGATGGCATATGTT
AGGAACAAGATATGTGCCGCCGCGTTGGAAGGAATGGTTTATAATAGGGG
AAATACATGTGCCGCTGGTGGATGCAGGAAGATAGCGAGCTTCGGAGTTG
CTGGCAGAATGAAGCCGGAGTACTGTGCCGACCATGCTCTGGAGGGCATG
ATCGATGTTGTAAACAAGACGTGTTCTGACGAAAGGTGCTCTAAGCTGCC
AAGTTTCGGAATGGTCGGCAGCCGAACACGGGAATACTGTGCCAAACATG
CTTTGGAGGGCATGGTCAGTCTTACGGCAAAGGTATGTGCCGCCGATGAA
TCCCCCAAGAATTCGACGTTGGGAGTGGCTCACAGCCGGAAGTCGGACTA
CTGTGCTTCAGATGTGTGCCCTAAAACTCCAACCATTACGGTAATCGACA
ACCGGAAACGGGAGTACTACACTAAGCATGCTTCGGAGGGGATGGTCAAC
ATTGAGGACAAACGATGTCCCGCCCATGGATGCACTAATCTCCCGAGCTT
CAAGGCGGATGGCAGCAAGAAACAGGAGTACTGCGGGGATCATGTTTCGG
AGGGTCTGGTTGACCTTCCTTCCGCAAAGCATAGCAAGATTGGGCGTTCT
GAGCTACTTAGGTATGGGGTAACCGTCAGCGCCAAGTTGGATAACAGCGC
TGAACAATCTATGAAGAAAATGGTTTACACTGCTACAAATACATGGGCCG
GCAATGATTGCCCCAGGAGGCCGAGTTGTGGCATACCCCGTCGCGAAAAG
CGGAAGTTCCCCGCTGTGGATATTTTGAAAGACACCAAAGCATGTTGTAG
GCAAGCGACCTATGGTATAGCCGACGACGGGATGCGGGAGTGCTGTGCTG
AACATGCTTTGGAGGGCATGGTGGTTGTGACTCAATGTGAGCAGGAGAGT
GACAGGAAGCGGATGCCTACTGTCTCACCTGCAGTAATCGTTTCGAGAGT
AACTGACGTTAGCGCCCCCTCTCCCCGGGAAGTAGCACATACCGATTTTG
TGAAGCTAGAAATATCACCACCTATATAACGCGTTGGAAGGAATGGTTTA
TAATAGGGGAAATACATGTGCCGCTGGTGGATGCAGGAAGATAGCGAGCT
TCGGAGTTGCTGGCAGAATGAAGCCGGAGTACTGTGCCGACCATGCTCTG
GAGGGCATGATCGATGTTGTAAACAAGACGTGTTCTGACGAAAGGTGCTC
TAAGCTGCCAAGTTTCGGAATGGTCGGCAGCCGAACACGGGAATACTGTG
CCAAACATGCTTTGGAGGGCATGGTCAGTCTTACGGCAAAGGTATGTGCC
GCCGATGAATCCCCCAAGAATTCGACGTTGGGAGTGGCTCACAGCCGGAA
GTCGGACTACTGTGCTTCAGATGTGTGCCCTAAAACTCCAACCATTACGG
TAATCGACAACCGGAAACGGGAGTACTACACTAAGCATGCTTCGGAGGGG
ATGGTCAACATTGAGGACAAACGATGTCCCGCCCATGGATGCACTAATCT
CCCGAGCTTCAAGGCGGATGGCAGCAAGAAACAGGAGTACTGCGGGGATC
ATGTTTCGGAGGGTCTGGTTGACCTTCCTTCCGCAAAGCATAGCAAGATT
GGGCGTTCTGAGCTACTTAGGTATGGGGTAACCGTCAGCGCCAAGTTGGA
TAACAGCGCTGAACAATCTATGAAGAAAATGGTTTACACTGCTACAAATA
CATGGGCCGGCAATGATTGCCCCAGGAGGCCGAGTTGTGGCATACCCCGT
CGCGAAAAGCGGAAGTTCCCCGCTGTGGATATTTTGAAAGACACCAAAGC
ATGTTGTAGGCAAGCGACCTATGGTATAGCCGACGACGGGATGCGGGAGT
GCTGTGCTGAACATGCTTTGGAGGGCATGGTGGTTGTGACTCAATGTGAG
CAGGAGAGTGACAGGAAGCGGATGCCTACTGTCTCACCTGCAGTAATCGT
TTCGAGAGTAACTGACGTTAGCGCCCCCTCTCCCCGGGAAGTAGCACATA
CCGATTTTGTGAAGCTAGAAATATCACCACCTATATAA
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