mRNA_H-elongata_contig54269.12797.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54269.12797.1
Unique NamemRNA_H-elongata_contig54269.12797.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54269.12797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54269contigH-elongata_contig54269:1149..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54269.12797.1prot_H-elongata_contig54269.12797.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54269 1172..1817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.9758902-UTR-H-elongata_contig54269:1148..11711622930883.9758902-UTR-H-elongata_contig54269:1148..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54269 1149..1171 +
1691679610.8582222-UTR-H-elongata_contig54269:1148..11711691679610.8582222-UTR-H-elongata_contig54269:1148..1171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54269 1149..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.9885306-CDS-H-elongata_contig54269:1171..13841622930883.9885306-CDS-H-elongata_contig54269:1171..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54269 1172..1384 +
1691679610.8708327-CDS-H-elongata_contig54269:1171..13841691679610.8708327-CDS-H-elongata_contig54269:1171..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54269 1172..1384 +
1622930884.0023954-CDS-H-elongata_contig54269:1787..18171622930884.0023954-CDS-H-elongata_contig54269:1787..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54269 1788..1817 +
1691679610.8858595-CDS-H-elongata_contig54269:1787..18171691679610.8858595-CDS-H-elongata_contig54269:1787..1817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54269 1788..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54269.12797.1

>prot_H-elongata_contig54269.12797.1 ID=prot_H-elongata_contig54269.12797.1|Name=mRNA_H-elongata_contig54269.12797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MDAFRPVIAPLVRTCGSLLQGALAKKRYPTENGFEERLAQHLTISLSEEL
EEWGSDIDVDIDQIAPHAFDETSSQYRAIAD
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mRNA from alignment at H-elongata_contig54269:1149..1817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54269.12797.1 ID=mRNA_H-elongata_contig54269.12797.1|Name=mRNA_H-elongata_contig54269.12797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=669bp|location=Sequence derived from alignment at H-elongata_contig54269:1149..1817+ (Himanthalia elongata Himel1 dioecious)
CTTGACAAGACAACGAGCCCCTCATGGACGCGTTCCGGCCCGTCATAGCC
CCCCTCGTCAGGACGTGCGGCTCTCTGCTGCAGGGCGCCCTCGCCAAGAA
GAGGTATCCAACGGAAAATGGATTTGAGGAACGTCTTGCTCAGCACCTCA
CGATCTCTCTTAGCGAGGAGCTAGAAGAATGGGGCAGCGACATCGATGTC
GACATCGACCAGATAGCCCCCCATGCCTTCGATGAGGTGCGTGGTGGTCG
GGCGGGATATGACAAGGGTCCAAGTATTTATTTTTTATTTATCTATTTTA
GTACATTATTTGTGTATTCGTTTGTTTTGAAAGCAGCAGCCGCCGGTAAT
GTTTTGATTACGGCCCCCGCCGATTAACACAGGGCTCGCCGTTAATTTTC
ATTTTTCATACACAGGCAGGACTCTGTTACAGTAGATAAGTATGGCCTAG
GAGCAACATGACTGTGTGGGGATGGATACGTTTGGTACTCGCTGGAGGCG
GGAATGGGGGGTCACGATCTCACGAGGCATTAATACAGTATATTGAGTCA
TCGTGTGCAAAAAGAGCAATGTAATTATTTGATTTACCCCACTATTTGTC
GACTGCCATCACAACATGTCCGTGCCGTACCGCCCGCAGACGTCCTCGCA
ATACCGCGCAATCGCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig54269:1149..1817+

>mRNA_H-elongata_contig54269.12797.1 ID=mRNA_H-elongata_contig54269.12797.1|Name=mRNA_H-elongata_contig54269.12797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig54269:1149..1817+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCGTTCCGGCCCGTCATAGCCCCCCTCGTCAGGACGTGCGGCTC
TCTGCTGCAGGGCGCCCTCGCCAAGAAGAGGTATCCAACGGAAAATGGAT
TTGAGGAACGTCTTGCTCAGCACCTCACGATCTCTCTTAGCGAGGAGCTA
GAAGAATGGGGCAGCGACATCGATGTCGACATCGACCAGATAGCCCCCCA
TGCCTTCGATGAGATGGACGCGTTCCGGCCCGTCATAGCCCCCCTCGTCA
GGACGTGCGGCTCTCTGCTGCAGGGCGCCCTCGCCAAGAAGAGGTATCCA
ACGGAAAATGGATTTGAGGAACGTCTTGCTCAGCACCTCACGATCTCTCT
TAGCGAGGAGCTAGAAGAATGGGGCAGCGACATCGATGTCGACATCGACC
AGATAGCCCCCCATGCCTTCGATGAGACGTCCTCGCAATACCGCGCAATC
GCCGACACGTCCTCGCAATACCGCGCAATCGCCGAC
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