prot_H-elongata_contig116217.1279.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116217.1279.1
Unique Nameprot_H-elongata_contig116217.1279.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length99
Homology
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BLAST of mRNA_H-elongata_contig116217.1279.1 vs. uniprot
Match: D7FXP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXP8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.140e-14
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 
Query:    2 NEIRFGRHLASSDKHVRDRTVSALREWLYHRSKGGALTDLDLLKARR 48
            NE++FG+HLASSDK VRDRTV ALREWL  RS+GG+LTDLDLLK  R
Sbjct:   33 NEVKFGKHLASSDKRVRDRTVGALREWLRQRSRGGSLTDLDLLKIWR 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116217.1279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXP8_ECTSI6.140e-1476.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010301Nucleolar, Nop52PFAMPF05997Nop52coord: 5..45
e-value: 1.7E-5
score: 24.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116217contigH-elongata_contig116217:1038..1816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116217.1279.1mRNA_H-elongata_contig116217.1279.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116217 1038..1817 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116217.1279.1 ID=prot_H-elongata_contig116217.1279.1|Name=mRNA_H-elongata_contig116217.1279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
KNEIRFGRHLASSDKHVRDRTVSALREWLYHRSKGGALTDLDLLKARRAS
ESPGSGVLTVDGVSPPIIASTRGRSGAVCGIACSCATRPPSRGSSPKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010301Nop52