mRNA_H-elongata_contig54242.12794.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54242.12794.1
Unique NamemRNA_H-elongata_contig54242.12794.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: D8LP06_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP06_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.530e-16
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS R+ VAILTEKIVYLTKHMQ+HP D+HSRRGLI MVNKRR+
Sbjct:  114 DTGSPRIVVAILTEKIVYLTKHMQQHPHDYHSRRGLITMVNKRRR 158
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-16
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRR 132
            DSGS+ VQVAI+TE+I+YLTKHMQ HP+DFHSRRGLIA+VNKRR
Sbjct:   97 DSGSAEVQVAIMTERIIYLTKHMQTHPKDFHSRRGLIALVNKRR 140
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A835ZJ48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ48_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.930e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRR 132
            DSGS+ VQVAI+TE+I+YLTKH+Q HP+DFHSRRGLIA+VN RR
Sbjct:  126 DSGSAEVQVAIMTERIIYLTKHLQTHPKDFHSRRGLIALVNNRR 169
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: D1B9J8_THEAS (30S ribosomal protein S15 n=2 Tax=Thermanaerovibrio TaxID=81461 RepID=D1B9J8_THEAS)

HSP 1 Score: 68.2 bits (165), Expect = 6.910e-14
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS  VQVAILT +I  LT+HM+ HP+DFHSRRGL+AMV KRRK
Sbjct:   20 DTGSPEVQVAILTHRIRELTEHMREHPKDFHSRRGLLAMVGKRRK 64
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: RS15_AQUAE (30S ribosomal protein S15 n=2 Tax=Aquifex TaxID=2713 RepID=RS15_AQUAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.270e-14
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS  VQ+AILTE+I  LT+HM++H +D HSRRGLIAMVNKRRK
Sbjct:   21 DTGSPEVQIAILTERINRLTEHMKKHKKDIHSRRGLIAMVNKRRK 65
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A7Z9Z7Z5_9AQUI (30S ribosomal protein S15 n=1 Tax=Aquificales bacterium TaxID=2109902 RepID=A0A7Z9Z7Z5_9AQUI)

HSP 1 Score: 68.2 bits (165), Expect = 8.050e-14
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS  VQ+AILTEKI  LT+HM++H +D HSRRGLIAMVNKRR+
Sbjct:   21 DTGSPEVQIAILTEKINRLTEHMKKHKKDLHSRRGLIAMVNKRRR 65
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BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A8UXQ9_9AQUI (30S ribosomal protein S15 n=2 Tax=Hydrogenivirga TaxID=246263 RepID=A8UXQ9_9AQUI)

HSP 1 Score: 67.8 bits (164), Expect = 1.030e-13
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS  VQ+AILTE+I  LT+HM++H +D HSRRGLIAMVNKRRK
Sbjct:   21 DTGSPEVQIAILTERINKLTEHMKKHKKDVHSRRGLIAMVNKRRK 65
[Close]
BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A8J9SE91_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SE91_PHATR)

HSP 1 Score: 67.0 bits (162), Expect = 1.830e-13
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS   QVA +TE+I YLTKH+Q+HP+DF +RRGL+A+VNKRR+
Sbjct:   18 DTGSPEYQVAGMTERIAYLTKHLQQHPKDFSTRRGLVALVNKRRR 62
[Close]
BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A7C1HNY7_9BACT (30S ribosomal protein S15 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1HNY7_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 2.030e-13
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            D+GS  VQVA+LTEKI YLT+H+++H +D HSRRGL+ MVNKRR+
Sbjct:   21 DTGSPDVQVALLTEKITYLTEHLKKHVKDVHSRRGLLQMVNKRRR 65
[Close]
BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Match: A0A1G0RJJ7_9BACT (30S ribosomal protein S15 n=1 Tax=Ignavibacteria bacterium GWF2_33_9 TaxID=1798430 RepID=A0A1G0RJJ7_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 2.810e-13
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK 135
            DSG   VQ+AILTE+I  LT+H++RHP+DFH+RRG+I +V KRRK
Sbjct:   20 DSGKPEVQIAILTERIADLTRHLERHPKDFHTRRGMIMLVAKRRK 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54242.12794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP06_ECTSI1.530e-1680.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDP8_9STRA2.210e-1681.82Tetrapyrrole methylase n=1 Tax=Tribonema minus Tax... [more]
A0A835ZJ48_9STRA5.930e-1677.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D1B9J8_THEAS6.910e-1471.1130S ribosomal protein S15 n=2 Tax=Thermanaerovibri... [more]
RS15_AQUAE7.270e-1471.1130S ribosomal protein S15 n=2 Tax=Aquifex TaxID=27... [more]
A0A7Z9Z7Z5_9AQUI8.050e-1471.1130S ribosomal protein S15 n=1 Tax=Aquificales bact... [more]
A8UXQ9_9AQUI1.030e-1371.1130S ribosomal protein S15 n=2 Tax=Hydrogenivirga T... [more]
A0A8J9SE91_PHATR1.830e-1364.44Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7C1HNY7_9BACT2.030e-1366.6730S ribosomal protein S15 n=1 Tax=bacterium TaxID=... [more]
A0A1G0RJJ7_9BACT2.810e-1364.4430S ribosomal protein S15 n=1 Tax=Ignavibacteria b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54242contigH-elongata_contig54242:1726..1863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue3.1e-10
Seed eggNOG ortholog224324.aq_226a
Preferred namerpsO
KEGG koko:K02956
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031123,GO:0031124,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
EggNOG OGs2G4BC@200783,COG0184@1,COG0184@2
Ec32 ortholog descriptionRibosomal protein S15, bacterial-type
Ec32 orthologEc-06_007070.1
COG Functional cat.J
Best tax levelAquificae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.5835233-CDS-H-elongata_contig54242:1725..18631622930883.5835233-CDS-H-elongata_contig54242:1725..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54242 1726..1863 +
1691679610.6524646-CDS-H-elongata_contig54242:1725..18631691679610.6524646-CDS-H-elongata_contig54242:1725..1863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54242 1726..1863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54242.12794.1prot_H-elongata_contig54242.12794.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54242 1726..1863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54242.12794.1

>prot_H-elongata_contig54242.12794.1 ID=prot_H-elongata_contig54242.12794.1|Name=mRNA_H-elongata_contig54242.12794.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DSGSSRVQVAILTEKIVYLTKHMQRHPQDFHSRRGLIAMVNKRRK*
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mRNA from alignment at H-elongata_contig54242:1726..1863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54242.12794.1 ID=mRNA_H-elongata_contig54242.12794.1|Name=mRNA_H-elongata_contig54242.12794.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig54242:1726..1863+ (Himanthalia elongata Himel1 dioecious)
GACTCGGGGTCCTCCCGCGTGCAGGTGGCAATCCTCACGGAGAAGATTGT
GTACCTCACGAAACACATGCAGCGGCACCCGCAGGACTTCCATTCCCGTC
GCGGCCTGATCGCCATGGTGAACAAGCGACGCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54242:1726..1863+

>mRNA_H-elongata_contig54242.12794.1 ID=mRNA_H-elongata_contig54242.12794.1|Name=mRNA_H-elongata_contig54242.12794.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig54242:1726..1863+ (Himanthalia elongata Himel1 dioecious)
GACTCGGGGTCCTCCCGCGTGCAGGTGGCAATCCTCACGGAGAAGATTGT
GTACCTCACGAAACACATGCAGCGGCACCCGCAGGACTTCCATTCCCGTC
GCGGCCTGATCGCCATGGTGAACAAGCGACGCAAGTGAGACTCGGGGTCC
TCCCGCGTGCAGGTGGCAATCCTCACGGAGAAGATTGTGTACCTCACGAA
ACACATGCAGCGGCACCCGCAGGACTTCCATTCCCGTCGCGGCCTGATCG
CCATGGTGAACAAGCGACGCAAGTGA
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