mRNA_H-elongata_contig54224.12792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54224.12792.1
Unique NamemRNA_H-elongata_contig54224.12792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: D8LAT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT7_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 2.760e-99
Identity = 170/208 (81.73%), Postives = 185/208 (88.94%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPE--------LPSVPTGAPSRVPVAVEEDEDARALRELEASMAM 959
            KRE +IQKKIK QLLDAKAKS AKDK+GA+FALKRKKM+EGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGA+AM+DARGRLDVDQVDDVMDDIK+EMD AEQIG+AIARPA+DLFDDDALLEEL+MLEEA+LEEQLLAPPAVPT RP+ P+  EQ +V E        LPSVP+  P   PVAVEEDEDARALRELEASMAM
Sbjct:   32 KRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 239
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A836CAA0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA0_9STRA)

HSP 1 Score: 224 bits (571), Expect = 3.100e-68
Identity = 146/236 (61.86%), Postives = 168/236 (71.19%), Query Frame = 3 
Query:  336 TPSRPCP------------KKRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSR-----------PESAEQ-------TSVPELPSVPTGAPSRVPVAVEEDEDARALRELEASM 953
            TP+ P P            +KRET++QKKIK QLL+AKAKS+  DK+GA+FALKRKKM+E E+NK+NGAR+TLE Q IALEGSN N+QTF AM SG +AM+ ARG+LDVD VD VMDDI+EEMD A+QIGEAIARPAE LFDDD LL EL  +EEAE+EE LLA PAVP   PS            P  A Q       +S  +LPSVPTG   RVP A EEDED RALRELEASM
Sbjct:   14 TPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGSSGMDLPSVPTGD-VRVPAA-EEDEDLRALRELEASM 246
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A6H5KZ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ84_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.280e-59
Identity = 112/144 (77.78%), Postives = 123/144 (85.42%), Query Frame = 3 
Query:  552 MNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPE--------LPSVPTGAPSRVPVAVEEDEDARALRELEASMAM 959
            MNMQTFNAMRSGA+AM+ ARGRLDVDQVDDVMDDIK+EMD AEQIG+AIARPA+DLFDDDALLEEL+MLEEA+LEEQLLAPPAVPT RP+ P+  EQ +V E        LPSVP+  P   PVAVEEDEDARALRELEASMAM
Sbjct:    1 MNMQTFNAMRSGAKAMEGARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPQGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 144
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A482SS87_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS87_9ARCH)

HSP 1 Score: 176 bits (446), Expect = 9.680e-50
Identity = 108/201 (53.73%), Postives = 141/201 (70.15%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVP---VAVEEDEDARALRELEASM 953
            KRE +I KKI   L +AK KS+ KDK GA+FALKRKK++E EV KL GAR+T+E+QI++LE +++N++TF AM++GA AMK  RG +D D+VDDVMD + EE D  + I EAI+RP +DLF+D+ LL+EL  L+  E+E  +       T  P+ P +    SV   P+VPT A S VP   VA EEDED RALRELEASM
Sbjct:   35 KREEHINKKIDASLQEAKLKSQKKDKNGALFALKRKKLYEAEVAKLQGARITMETQILSLESASVNIETFKAMKTGANAMKAMRGDIDADKVDDVMDALAEEKDIQDAISEAISRPGQDLFNDEELLDELAELDALEMEASVAN-----TVAPAAPVAPPPQSVFNFPAVPTKAVSPVPSKPVAHEEDEDERALRELEASM 230
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A7S3XYN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYN0_HETAK)

HSP 1 Score: 174 bits (441), Expect = 6.040e-49
Identity = 104/203 (51.23%), Postives = 141/203 (69.46%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVP--ELPSVPTGAPSRVPVAVEED-EDARALRELEASMAM 959
            KRET+I  KI  Q  +AKAK K KD++GAMF LKRKKM+E E++KLNGA++ LE QI ALEG+++N + F A R+   A+K ARG +D D V++ +DDI EEM+ A +IGEAI+RPA++LF+D+ LL+EL  LEE  +EE LLA PA P   P     AE+   P  +LP+ PTGA +   +  + D +D  ALR LEA +A+
Sbjct:   34 KRETFIAAKIVQQTNEAKAKLKKKDQRGAMFCLKRKKMYEKEIDKLNGAKLQLEQQIFALEGAHINTEAFEASRAAVGALKAARGNIDADTVEETLDDINEEMELANEIGEAISRPAQELFEDEELLDELRELEELGVEEDLLAAPAAPVRAPPAAAVAEEAKQPAYDLPAAPTGAVAASAIQGDVDADDLDALRALEAELAV 236
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A7S2RAI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAI7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.200e-47
Identity = 104/200 (52.00%), Postives = 131/200 (65.50%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAED-LFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVPVAVEEDEDARALRELEASMA 956
            KRE +IQKKI  Q+ +A+   K  DK+ A++ +KRKKMFEGEV+K+ GARMTLE Q +ALE S   M+TF AMR G Q M+  R  +D D V + MDDI++E++ A  I  AI  P  D L D++ALL ELN +E+ ELE+ LL  PAVP   P+         + ELP+VPTGA S     VEEDED  ALRELEA MA
Sbjct:   63 KREVHIQKKIDAQIQEARQNMKKGDKRSALYCMKRKKMFEGEVDKIRGARMTLEQQALALESSATTMETFKAMREGNQTMRALRANVDADTVGETMDDIRDEIEEANDISAAIGEPLNDGLEDEEALLAELNEMEQLELEQTLLGTPAVPAAAPA---------LGELPAVPTGAISMPAAGVEEDEDLAALRELEADMA 253
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A1W0A9Q0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 8.130e-47
Identity = 107/207 (51.69%), Postives = 145/207 (70.05%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAED-LFDDDALLEELNMLEEAELEEQLLAP-----PAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVPVAVEEDEDA-RALRELEASMAM 959
            KRE++I+KKI+ QL +AK KS AKDK+GA+F LKRKKM+E E+ KL GARMTLE+Q++ LE + +NMQTF A+R+GA  MK   G+++VD VDD+MDDI+EEM TA++IG AI++P  + L+DDD L  EL+ML E +LE+QL A      PA P   P++   A   S+   P  P+ A + + V+ + D D    LR LEASMAM
Sbjct:   35 KRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAAHQQPAPAQPARVPAQ-APATAASMFTFPEAPSHAVTNIKVSGKADADELEELRRLEASMAM 240
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A7S2B2J5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2J5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.600e-47
Identity = 108/200 (54.00%), Postives = 139/200 (69.50%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAED-LFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVPVAVE-EDEDARALRELEASM 953
            KRE +I  KI  Q  +AKAK   KDK+GA+  +KRKKMFE E+ K+ GARMTLE Q++ALE + MNMQTF AM  G QA+K ARG +D D + D MDDI+EEMD A+ I  A+  P +D L DDD LL ELNM+E+ +LE++LL PP+VPT+ P    +AE   + +LP  PT   S+V V  + ED++  ALRELEASM
Sbjct:   83 KREAHIGTKITAQTAEAKAKLAKKDKKGALICMKRKKMFENEITKIQGARMTLEQQMMALENAAMNMQTFGAMNEGKQALKAARGGMDADTIGDTMDDIREEMDEADAIATALGAPLDDALEDDDELLAELNMMEQDDLEDKLLNPPSVPTSTPVG--AAED--ILDLPDAPT---SQVVVDGDVEDDELAALRELEASM 275
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BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A418AQT0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A418AQT0_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.710e-46
Identity = 105/209 (50.24%), Postives = 143/209 (68.42%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAED-LFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPE-------LPSVPTGAPSRVPVAVEEDEDA-RALRELEASMAM 959
            KRE +I+KK++ QL +AK KS AKDK+GA+F LKRKKM+E E+ KL GARMTLE+Q++ LE + +NM TF A+RSGA  MK   G+++VD VDD+MDDI+EEM TA++IG AI++P  + L+D+D L ++L  L++  +EEQL  P  V     +RP+ A+     +       LP VPT A S+V V  + D D    LR LEASMAM
Sbjct:   58 KREAHIEKKMELQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFTALRSGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDEDELEQQLRELDDLAMEEQLATPSPVAAPVQARPQPAQAAPAQQPAQAMFNLPEVPTHAVSQVKVTGKADADELEELRRLEASMAM 266
[Close]
BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Match: A0A7S3NK50_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK50_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.990e-46
Identity = 102/201 (50.75%), Postives = 134/201 (66.67%), Query Frame = 3 
Query:  360 KRETYIQKKIKGQLLDAKAKSKAKDKQGAMFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQAMKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEELNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVPVAV-EEDEDARALRELEASMAM 959
            KR+ ++ KKI+ QL +AK K   KDK+GA++ LKRKKM+EGE+ K+NGAR+TLE Q+IA+EG+  N +T  AM +G  AM  AR  + VD V ++MDDI +E++ A  I EAI+ PA  + DD+ LL ELN LEE ELE QLL  PAVP T              +LP VPT  P  +PV   +ED D +ALRELEA+MA+
Sbjct:   37 KRQVHLDKKIEQQLAEAKVKIAKKDKRGALYCLKRKKMYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQLLDAPAVPAT------------AIDLPDVPTATPE-IPVQQNQEDADTKALRELEAAMAL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54224.12792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAT7_ECTSI2.760e-9981.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAA0_9STRA3.100e-6861.86Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A6H5KZ84_9PHAE1.280e-5977.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SS87_9ARCH9.680e-5053.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3XYN0_HETAK6.040e-4951.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RAI7_9STRA3.200e-4752.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1W0A9Q0_9STRA8.130e-4751.69Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2B2J5_9STRA8.600e-4754.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A418AQT0_9STRA1.710e-4650.24Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A7S3NK50_9STRA1.990e-4650.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54224contigH-elongata_contig54224:230..2102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue3.2e-68
Seed eggNOG ortholog2880.D8LAT7
Preferred nameCHMP4C
KEGG koko:K12194,ko:K16075,ko:K17085,ko:K19306
KEGG TC1.A.35.5
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000278,GO:0000280,GO:0000281,GO:0000815,GO:0000819,GO:0000902,GO:0000904,GO:0000910,GO:0000920,GO:0001894,GO:0001919,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006620,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006950,GO:0006996,GO:0006997,GO:0006998,GO:0007009,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008356,GO:0008565,GO:0008593,GO:0009056,GO:0009057,GO:0009268,GO:0009405,GO:0009628,GO:0009653,GO:0009838,GO:0009892,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010324,GO:0010389,GO:0010458,GO:0010467,GO:0010506,GO:0010507,GO:0010564,GO:0010639,GO:0010646,GO:0010648,GO:0010824,GO:0010941,GO:0010948,GO:0010972,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016241,GO:0016242,GO:0016322,GO:0016358,GO:0016485,GO:0017145,GO:0019058,GO:0019068,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030117,GO:0030154,GO:0030163,GO:0030182,GO:0030425,GO:0030447,GO:0030496,GO:0031090,GO:0031175,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031468,GO:0031505,GO:0031967,GO:0031975,GO:0031982,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032886,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034059,GO:0034613,GO:0034622,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036257,GO:0036258,GO:0036293,GO:0036294,GO:0036438,GO:0036452,GO:0036477,GO:0039702,GO:0040007,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042078,GO:0042221,GO:0042493,GO:0042551,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044878,GO:0045047,GO:0045169,GO:0045184,GO:0045229,GO:0045324,GO:0045746,GO:0045786,GO:0045926,GO:0045930,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048132,GO:0048285,GO:0048468,GO:0048469,GO:0048475,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048871,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051117,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051260,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051493,GO:0051503,GO:0051603,GO:0051604,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0060236,GO:0060249,GO:0060255,GO:0060548,GO:0061024,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070507,GO:0070676,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071214,GO:0071241,GO:0071248,GO:0071285,GO:0071453,GO:0071454,GO:0071467,GO:0071554,GO:0071555,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071944,GO:0071985,GO:0072594,GO:0072599,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0090148,GO:0090150,GO:0090169,GO:0090224,GO:0090543,GO:0090611,GO:0097320,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098722,GO:0098728,GO:0098796,GO:0098805,GO:0098813,GO:0104004,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140014,GO:1901184,GO:1901185,GO:1901214,GO:1901215,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902115,GO:1902116,GO:1902186,GO:1902188,GO:1902749,GO:1902750,GO:1902902,GO:1903047,GO:1903900,GO:1903902,GO:1904669,GO:1990635,GO:2000785
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG1656@1,KOG1656@2759
EC2.1.1.309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-27_006420.1
Exons3
Model size1130
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54224.12792.1prot_H-elongata_contig54224.12792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54224 676..1934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.3724148-UTR-H-elongata_contig54224:229..6751622930883.3724148-UTR-H-elongata_contig54224:229..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54224 230..675 +
1691679610.5403545-UTR-H-elongata_contig54224:229..6751691679610.5403545-UTR-H-elongata_contig54224:229..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54224 230..675 +
1622930883.4378211-UTR-H-elongata_contig54224:1934..21021622930883.4378211-UTR-H-elongata_contig54224:1934..2102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54224 1935..2102 +
1691679610.577986-UTR-H-elongata_contig54224:1934..21021691679610.577986-UTR-H-elongata_contig54224:1934..2102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54224 1935..2102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.388632-CDS-H-elongata_contig54224:675..7561622930883.388632-CDS-H-elongata_contig54224:675..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 676..756 +
1691679610.551153-CDS-H-elongata_contig54224:675..7561691679610.551153-CDS-H-elongata_contig54224:675..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 676..756 +
1622930883.4052186-CDS-H-elongata_contig54224:1219..13751622930883.4052186-CDS-H-elongata_contig54224:1219..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 1220..1375 +
1691679610.5591705-CDS-H-elongata_contig54224:1219..13751691679610.5591705-CDS-H-elongata_contig54224:1219..1375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 1220..1375 +
1622930883.421725-CDS-H-elongata_contig54224:1655..19341622930883.421725-CDS-H-elongata_contig54224:1655..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 1656..1934 +
1691679610.5678318-CDS-H-elongata_contig54224:1655..19341691679610.5678318-CDS-H-elongata_contig54224:1655..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54224 1656..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54224.12792.1

>prot_H-elongata_contig54224.12792.1 ID=prot_H-elongata_contig54224.12792.1|Name=mRNA_H-elongata_contig54224.12792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
MFALKRKKMFEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAQA
MKDARGRLDVDQVDDVMDDIKEEMDTAEQIGEAIARPAEDLFDDDALLEE
LNMLEEAELEEQLLAPPAVPTTRPSRPESAEQTSVPELPSVPTGAPSRVP
VAVEEDEDARALRELEASMAM*
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mRNA from alignment at H-elongata_contig54224:230..2102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54224.12792.1 ID=mRNA_H-elongata_contig54224.12792.1|Name=mRNA_H-elongata_contig54224.12792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1873bp|location=Sequence derived from alignment at H-elongata_contig54224:230..2102+ (Himanthalia elongata Himel1 dioecious)
GGCGACTACACGTGAAGGGGAGTAATAAAAAGAAAGATTTGGTGTCCTGT
GCCGTATGGTATGGTATGGGCCACAATATTTTCTCTATTTTCGTGACACT
GATCTCTTCGTCGCATGTCATCAAAAACAAGTTCTCTACAAATGTGTCGG
CAGAAAGACACCAAAACTCCAAAAGGGTTCCGCTACCAGGAGTCCATTTG
TGTATTTTGTCTTTTGCCCAGACTATAACCACGATGAACGATGCATGCTT
AACCCTTTTGACTAGCTGGCACTAGCTGGCAGGTACCTTCAGCATATGGA
CAATGTTTACCGTATGAGTAAGACGTAATGAACACACACCTTCCCGTCCT
TGTCCTAAAAAAAGGGAGACCTACATCCAGAAAAAAATTAAGGGCCAGCT
CCTGGACGCCAAGGCGAAGAGCAAGGCAAAGGACAAGCAGGGGGCGATGT
TCGCGCTGAAGAGAAAGAAGATGTTTGAGGGGGAAGTCAACAAGCTCAAC
GGCGCCAGGATGACTCTAGAGAGCCAGGCATGGAAAACTCAAAGCAATTT
TATGTCTCCTATCTTGTGTGCCAGCTCGTTTTTTTCCAGTCTAAAGTTAT
TTACTAACTCGGCAGCTGTGGCCTCTGTGAGAAAGGGGTGGACTCTCAAG
GGTGCTCGGTAACTTGCTTGTGCGTATTATAAGGCAGGCGACGATTTTTT
CTTGCAAGCAGGCGTGATGCTTCCCGTGGCTTGCGTTCGTGGGCAGACTA
TATTTTTTATCTCCATGTTGTTGGTTGAGATGGTGGACGATGGTGCGCGG
CAACGAGGCTCGTACACGACATTATTTTTTTTGTTTTAAATACGAAGTAT
ATTTTAATGACGGAAGCTAGGGAACGAATTGCATACAAAGTATGCCGGTT
GGGCCGCACCGACGAGTGGGTATCATGATCTCCAACGATAGAACCGTCTT
CCCGTGTTGCTCTATCCCCACTGACCCGGGCACTTTCCAGATCATTGCCC
TCGAGGGCTCGAACATGAATATGCAGACCTTCAACGCGATGCGCAGCGGG
GCACAGGCGATGAAAGACGCGCGTGGACGGCTCGACGTGGACCAAGTCGA
TGACGTCATGGACGACATCAAGGAAGAGATGGATACCGCTGAGCAGGTGT
GTTCCGCTCTAGGATGGTCCGACTCATCTGCCGTCCGTTGTGATTTTTTT
CTGCTTAAGCTTGGTGTGGGTAACTTTACGCAGCACCTGTTGAGATATTT
TCTTCGCGAGAATTATGTCTAACCCCATCCCTTCCTCATTTCTATGAAAC
TTTCGAATAGGGTTTTTAAATTTTTACCTATGCCACACCCTTGAATAGTC
AAAACTGTTTTTGCGGTATCTCTGATGCCTCTACCCCTCCATTCCCCCAC
GGTGCCACCCATCCATCATCTCCAAGATCGGAGAAGCGATCGCTCGGCCG
GCAGAAGATCTGTTCGACGATGACGCCCTTCTGGAGGAGTTGAACATGCT
GGAGGAGGCAGAACTGGAGGAACAGCTGCTCGCGCCGCCCGCGGTGCCGA
CCACTCGCCCATCCCGCCCAGAGTCAGCGGAGCAGACGAGCGTCCCCGAG
TTACCGTCTGTGCCCACGGGCGCGCCTTCAAGGGTGCCCGTCGCCGTGGA
GGAGGACGAGGACGCGAGGGCGCTTCGAGAGCTCGAGGCCAGCATGGCGA
TGTGATTCACTTTTGTTTAGCCTCTACTATAGAGAGATGGGTGCCGTTTT
AGTGCTGATGGGGTGATGGAGTATTGCTTTAAATTCCCCTGGGGCCAAGG
CAACCGAGGCGAGATAACTTGCCCGCAGCGACGCGCGCGTGCGGGCCTCC
CGTCTGCCGTTAAATGAAGCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig54224:230..2102+

>mRNA_H-elongata_contig54224.12792.1 ID=mRNA_H-elongata_contig54224.12792.1|Name=mRNA_H-elongata_contig54224.12792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig54224:230..2102+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGCTGAAGAGAAAGAAGATGTTTGAGGGGGAAGTCAACAAGCT
CAACGGCGCCAGGATGACTCTAGAGAGCCAGATGTTCGCGCTGAAGAGAA
AGAAGATGTTTGAGGGGGAAGTCAACAAGCTCAACGGCGCCAGGATGACT
CTAGAGAGCCAGATCATTGCCCTCGAGGGCTCGAACATGAATATGCAGAC
CTTCAACGCGATGCGCAGCGGGGCACAGGCGATGAAAGACGCGCGTGGAC
GGCTCGACGTGGACCAAGTCGATGACGTCATGGACGACATCAAGGAAGAG
ATGGATACCGCTGAGCAGATCATTGCCCTCGAGGGCTCGAACATGAATAT
GCAGACCTTCAACGCGATGCGCAGCGGGGCACAGGCGATGAAAGACGCGC
GTGGACGGCTCGACGTGGACCAAGTCGATGACGTCATGGACGACATCAAG
GAAGAGATGGATACCGCTGAGCAGATCGGAGAAGCGATCGCTCGGCCGGC
AGAAGATCTGTTCGACGATGACGCCCTTCTGGAGGAGTTGAACATGCTGG
AGGAGGCAGAACTGGAGGAACAGCTGCTCGCGCCGCCCGCGGTGCCGACC
ACTCGCCCATCCCGCCCAGAGTCAGCGGAGCAGACGAGCGTCCCCGAGTT
ACCGTCTGTGCCCACGGGCGCGCCTTCAAGGGTGCCCGTCGCCGTGGAGG
AGGACGAGGACGCGAGGGCGCTTCGAGAGCTCGAGGCCAGCATGGCGATG
TGAATCGGAGAAGCGATCGCTCGGCCGGCAGAAGATCTGTTCGACGATGA
CGCCCTTCTGGAGGAGTTGAACATGCTGGAGGAGGCAGAACTGGAGGAAC
AGCTGCTCGCGCCGCCCGCGGTGCCGACCACTCGCCCATCCCGCCCAGAG
TCAGCGGAGCAGACGAGCGTCCCCGAGTTACCGTCTGTGCCCACGGGCGC
GCCTTCAAGGGTGCCCGTCGCCGTGGAGGAGGACGAGGACGCGAGGGCGC
TTCGAGAGCTCGAGGCCAGCATGGCGATGTGA
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