mRNA_H-elongata_contig5422.12791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5422.12791.1
Unique NamemRNA_H-elongata_contig5422.12791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5422.12791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5422contigH-elongata_contig5422:448..1159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size286
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5422.12791.1prot_H-elongata_contig5422.12791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5422 472..1071 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.2773566-UTR-H-elongata_contig5422:447..4711622930883.2773566-UTR-H-elongata_contig5422:447..471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5422 448..471 -
1691679610.5057702-UTR-H-elongata_contig5422:447..4711691679610.5057702-UTR-H-elongata_contig5422:447..471Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5422 448..471 -
1622930883.3276627-UTR-H-elongata_contig5422:1071..11591622930883.3276627-UTR-H-elongata_contig5422:1071..1159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5422 1072..1159 -
1691679610.5301354-UTR-H-elongata_contig5422:1071..11591691679610.5301354-UTR-H-elongata_contig5422:1071..1159Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5422 1072..1159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.2934191-CDS-H-elongata_contig5422:471..4861622930883.2934191-CDS-H-elongata_contig5422:471..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5422 472..486 -
1691679610.5144248-CDS-H-elongata_contig5422:471..4861691679610.5144248-CDS-H-elongata_contig5422:471..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5422 472..486 -
1622930883.3109224-CDS-H-elongata_contig5422:912..10711622930883.3109224-CDS-H-elongata_contig5422:912..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5422 913..1071 -
1691679610.522337-CDS-H-elongata_contig5422:912..10711691679610.522337-CDS-H-elongata_contig5422:912..1071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5422 913..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5422.12791.1

>prot_H-elongata_contig5422.12791.1 ID=prot_H-elongata_contig5422.12791.1|Name=mRNA_H-elongata_contig5422.12791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MNITHEGEHICFLLVFELQQEKEKRGKKGSPNLEGHTKEDSHRDRFWMPK
HREEVGT*
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mRNA from alignment at H-elongata_contig5422:448..1159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5422.12791.1 ID=mRNA_H-elongata_contig5422.12791.1|Name=mRNA_H-elongata_contig5422.12791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=712bp|location=Sequence derived from alignment at H-elongata_contig5422:448..1159- (Himanthalia elongata Himel1 dioecious)
GTCGGTGTCGTAGCTCCCGCTGATTACGGAGGATAAGGAGAATGAGGCGG
CTGTGGAGGATTTATGACGCCTTCGTCCGTTGAACGGCATGAATATTACC
CACGAAGGCGAGCATATTTGTTTTTTACTTGTTTTTGAACTACAACAAGA
AAAAGAAAAAAGAGGAAAAAAAGGCTCACCGAACCTGGAGGGTCATACCA
AGGAGGACTCCCACCGAGATCGCTTTTGGATGCCGAAGCACAGGGAGGTA
AGTCTTGGAATTCGAACTGTCCCATACATTTTGGATGGGCCGCGTCGTGT
CGTATCGTGCAGTATAGTGGAGATTAGGCGCGTCTTTTCCAACTCGCTTG
CTTGGCTGCGGGGTCAGTTTTGTATCTGCGTCGAAATGCACACTTTCAAC
CTGAGACTTCTCCCGTCCGATATCCGATGTCCGATATACCGATATCCGAT
GTCCGATGTACCGCAGTGTCGTGGCGGTACATGTTATCCCTATCGCAGTC
TTGATTGGATGCATGTGGACGGCAAAATCGCGCTCACGGGATTGTTGAGG
TGGCGCGGACGACATGTGTTATGGTAGGAGGGTGGTCCTTAAGCCCCGAG
TTTCTCCTCCCCCAAACTTGTGGTGTATCCGTCGCTATTTCGTTGACGCC
CCGCTGTGGTGTATATATGCTAGGAGGTCGGCACCTGAGCCAGAGGCAGG
AAAAGATCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig5422:448..1159-

>mRNA_H-elongata_contig5422.12791.1 ID=mRNA_H-elongata_contig5422.12791.1|Name=mRNA_H-elongata_contig5422.12791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig5422:448..1159- (Himanthalia elongata Himel1 dioecious)
ATGAATATTACCCACGAAGGCGAGCATATTTGTTTTTTACTTGTTTTTGA
ACTACAACAAGAAAAAGAAAAAAGAGGAAAAAAAGGCTCACCGAACCTGG
AGGGTCATACCAAGGAGGACTCCCACCGAGATCGCTTTTGGATGCCGAAG
CACAGGGAGATGAATATTACCCACGAAGGCGAGCATATTTGTTTTTTACT
TGTTTTTGAACTACAACAAGAAAAAGAAAAAAGAGGAAAAAAAGGCTCAC
CGAACCTGGAGGGTCATACCAAGGAGGACTCCCACCGAGATCGCTTTTGG
ATGCCGAAGCACAGGGAGGAGGTCGGCACCTGAGAGGTCGGCACCTGA
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