mRNA_H-elongata_contig54164.12786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54164.12786.1
Unique NamemRNA_H-elongata_contig54164.12786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A6H5JL82_9PHAE (L-type lectin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL82_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 5.090e-132
Identity = 178/223 (79.82%), Postives = 203/223 (91.03%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETYVSS 669
            +SK GA+WSVD+IGNTVFSSVLEFR+SGKGDRFFGDGLA+WVVEPER HD  D+HYG YY DDL  GWGGG+K+LRADLP+GD+HGFVE FKGLGVIVDTYRNEE+Y+AHKD T+V NTGNMTR+EM++ASVGCN QVR+YENR DF PGS SSR+KVEV+GNVLTVKVDPK+S TW DC QLELP E+G+EW KG+HLGLTASTG+LSDNHDV+RLETYVSS
Sbjct:   65 QSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTIVYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLELPKELGEEWAKGSHLGLTASTGQLSDNHDVIRLETYVSS 287          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: D7FS50_ECTSI (L-type lectin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS50_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 2.680e-131
Identity = 177/223 (79.37%), Postives = 202/223 (90.58%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETYVSS 669
            +SK GA+WSVD+IGNTVFSSVLEFR+SGKGDRFFGDGLA+WVVEPER HD  D+HYG YY DDL  GWGGG+K+LRADLP+GD+HGFVE FKGLGVIVDTYRNEE+Y+AHKD T+V NTGNMTR+EM++ASVGCN QVR+YENR DF PGS SSR+KVEV+GNVLTVKVDPK+S TW DC QL+LP E+G+EW KG HLGLTASTG+LSDNHDV+RLETYVSS
Sbjct:   73 QSKRGAVWSVDAIGNTVFSSVLEFRLSGKGDRFFGDGLALWVVEPERRHDLYDMHYGGYYDDDLGAGWGGGMKDLRADLPSGDFHGFVETFKGLGVIVDTYRNEEYYNAHKDFTIVYNTGNMTRDEMVEASVGCNGQVRFYENRADFDPGSVSSRVKVEVAGNVLTVKVDPKNSKTWEDCAQLDLPKELGEEWAKGGHLGLTASTGQLSDNHDVIRLETYVSS 295          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A835YLV0_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV0_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.110e-58
Identity = 106/225 (47.11%), Postives = 146/225 (64.89%), Query Frame = 1
Query:    4 SKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDF---DDLHYGDY-YGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREE-MIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAE-MGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            SK G+ WS   IG T  + ++EFRISGKG R FGDGLAVW+ +P R HD    DD ++GD  YGD      G  +     + P GD+H F   FKG+GVI DTY N +  + HKDVTVV+N  N T    +++ S GC + VR++E RDDF  G  SS+ K+ V+ N LTV VDPK++  W +CT+++LP + +   W   AH+G+TASTG+L+DNHD++R++ Y
Sbjct:   71 SKKGSAWSKSPIGKTEATVIVEFRISGKGRRLFGDGLAVWLAQPYRTHDAAWDDDFYFGDQAYGDQAA---GNNVYHAWNEWPLGDFHAFEPDFKGIGVIFDTYVNADLPN-HKDVTVVINDRNTTDTHVLLENSHGCMSLVRWFEGRDDFHAGKVSSKAKITVANNELTVLVDPKNTGAWQECTKVQLPTDKLEAGWLSSAHIGVTASTGQLADNHDLLRVDVY 291          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.680e-51
Identity = 93/220 (42.27%), Postives = 133/220 (60.45%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK GA+WS  S+G   FS++L+FRISG+G +FFGDG+A+WV++                               +A    GD HG VE+F G GVI DT++N E  S H+DV+V++N G  + E M+    GC+A +RY+E+R DF    S SR KV V+G  L V++D K+   + DC  ++LP  M  +W K AH+G+TASTG+L+DNHDV+ L T+
Sbjct:   87 QSKKGAVWSRKSLGTDTFSTILKFRISGQGKKFFGDGMALWVMQ-------------------------------QAYFVEGDLHGSVERFTGFGVIFDTFKNTESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSV-ESMSRAKVIVTGKRLVVQIDGKNDGQFKDCAVVDLPFAM--DWAKSAHIGVTASTGQLADNHDVISLTTF 272          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A7S2RYF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYF1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.600e-50
Identity = 92/220 (41.82%), Postives = 130/220 (59.09%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK GALWS  S+G   FS  L+FRISG+G +FFGDG+A+WV++                               +A    GD+HG VE+F G GVI DT++N E  S H+DV++V N G  T E M++   GC+A +RY+E R DF   S+S    +  +G  +TV VDP +  T+T C Q ELP +  + W + AH+G++ASTG+L+DNHDV+ L T+
Sbjct:  104 QSKKGALWSRKSLGTDNFSMTLKFRISGQGKKFFGDGMALWVMQ-------------------------------QAYYVEGDFHGSVERFTGFGVIFDTFKNTETLSYHRDVSLVYNDGEKTTEVMLENKEGCDASIRYHEERGDFSVESASRAKVIVENGRQITVLVDPSNDGTFTRCIQAELPLD--QNWARQAHVGVSASTGQLADNHDVLELVTF 290          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A7S0XEJ2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.030e-44
Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNV-LTVKVDPKHSNTWTDCTQL-ELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK GALWS  +I     SSV +FRISG+G  FFGDG+AVW+V+              YY +                   G  HGF++KF G+GVI DT++N E  + H+DVT+++N G  T E M +   GCN  VRY+  R DF   +  S+ ++ V  N  L V VD K++  WT C  + +LP +  K+W K A++G+TA+TG+L+DNHDV+ L +Y
Sbjct:   71 QSKKGALWSRKAINVPAMSSVFKFRISGQGKNFFGDGMAVWIVQ------------NAYYTE-------------------GALHGFIDKFVGIGVIFDTFKNTENLAIHRDVTILINDGEKTYEAMTQEVQGCNINVRYHNERADFSV-TDMSKARITVDDNHRLQVLVDAKNTGEWTTCVDITDLPLQ--KDWLKKAYIGITATTGQLADNHDVISLTSY 258          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: K3WDP7_GLOUD (L-type lectin-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP7_GLOUD)

HSP 1 Score: 162 bits (409), Expect = 3.220e-44
Identity = 82/221 (37.10%), Postives = 127/221 (57.47%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMI-KASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK G++WS   + +  F SV+ FRI G+G ++FGDG+ +W+            H G Y                      GD HGF +++ G+G+I+DT++N E    HKDVTV +N G  T + +  +  +GC+A  RY+ N   F P  SSSRL+++V GN LT+++DPK+   W+ C Q  LP    ++W + A LG+TASTG L+DNHD++ + ++
Sbjct:   71 QSKRGSIWSRRVVDSEKFVSVVTFRIHGQGKKWFGDGIGIWLT-----------HEGRYVN--------------------GDNHGFTDQYYGVGIILDTFKNVEHRGGHKDVTVQINDGKKTLDMLNDETKIGCDAAFRYHSNSAAFDPVYSSSRLRIKVDGNKLTLEIDPKNEGKWSQCYQGTLP--FSQDWLRRATLGITASTGALADNHDIISVRSF 258          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A7S3K3R2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.180e-43
Identity = 94/244 (38.52%), Postives = 131/244 (53.69%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNV-----------------------LTVKVDPKHSNTWTDCT-QLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK GALW+   IG +  S  L+FRISG+G ++FGDG+A+W+ E                               R+  P GD+HGF EKFKG+G+I+DT++N E  S HKD+T+V+N G    E ++  SVGCN  VRY+E R DF   +S+SR+K  +   V                       L+V +D  +S  + DC     LPA +   W   AHLG+TASTG+L+DNHDV+ LE +
Sbjct:   65 QSKKGALWATKPIGVSEASVALKFRISGQGKKYFGDGMALWLTES------------------------------RSYRP-GDFHGFSEKFKGIGIIIDTFKNAETLSYHKDITIVMNQGESEIETILANSVGCNGDVRYHEERADFSV-NSASRVKFILEPVVDPNDDTTDKKDNKNNDYKPGQLKLSVFLDESNSGGYIDCVASTVLPAALDATWLTRAHLGITASTGQLADNHDVLALEVF 276          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A5D6Y4J1_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4J1_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.430e-42
Identity = 81/221 (36.65%), Postives = 122/221 (55.20%), Query Frame = 1
Query:    1 KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMIK-ASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            +SK G +WS  +I +  F +V+ FRI G+G R+FGDG+ VW+   +R                                 +GD HGF ++F G+GV++DT++N E    HKDVTV +N G  T + +   A +GC+A  RY+     F P  SSSRL+++V G  L ++VDPK+  +WT+C    LP     +W + A  G+TASTG L+DNHD++ +  +
Sbjct:   67 QSKRGYIWSRAAIDSAQFVAVITFRIHGQGQRWFGDGIGVWLTHEKRF-------------------------------ASGDNHGFTDQFYGVGVVLDTFKNVEHRGGHKDVTVQVNDGTKTLDALTDGAKIGCDAAFRYHAKSAAFDPVYSSSRLRIKVDGADLRLEVDPKNEGSWTECYAGTLP--FSADWVRRATFGITASTGALADNHDILSVRAF 254          
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Match: A0A024TPB8_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPB8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.850e-41
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    7 KSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHDFDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDTYRNEEFYSAHKDVTVVLNTGNMTREEMI-KASVGCNAQVRYYENRDDFFPGSSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLGLTASTGELSDNHDVVRLETY 660
            K G +W+   IG   F++VL FRISG+G ++FGDG+ +W+   +             YGD+                     HGF   F+G+G+I+DT+ N +    HKDV+V +N G+ T +++  +  VGC+A +RY+E    F    S+SR+KV+V G +L+++VD K++  W  C +  LP     +W + + LG+T +TG ++DNHDV+RL TY
Sbjct:   71 KKGYIWNNQVIGRDSFATVLTFRISGQGKKWFGDGIGLWLTSSQNY----------VYGDN---------------------HGFDSDFRGVGIIIDTFNNPDHKGGHKDVSVQINDGSKTLQQLNDETKVGCDAALRYHEESAAFNAAHSASRIKVKVVGQILSIEVDEKNTAAWKQCYETTLP--FSADWLRTSTLGITGATGGVADNHDVLRLATY 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54164.12786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL82_9PHAE5.090e-13279.82L-type lectin-like domain-containing protein n=1 T... [more]
D7FS50_ECTSI2.680e-13179.37L-type lectin-like domain-containing protein n=1 T... [more]
A0A835YLV0_9STRA2.110e-5847.11L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S2B8C4_9STRA4.680e-5142.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RYF1_9STRA2.600e-5041.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0XEJ2_9STRA1.030e-4440.54Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
K3WDP7_GLOUD3.220e-4437.10L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S3K3R2_9STRA1.180e-4338.52Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A5D6Y4J1_9STRA2.430e-4236.65L-type lectin-like domain-containing protein n=1 T... [more]
A0A024TPB8_9STRA1.850e-4135.62L-type lectin-like domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54164contigH-elongata_contig54164:1..2894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.3
Seed ortholog evalue2.5e-105
Seed eggNOG ortholog2880.D7FS50
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConcanavalin A-like lectin/glucanase domain
Ec32 orthologEc-16_004350.1
Exons7
Model size669
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.4409585-CDS-H-elongata_contig54164:0..1231622930882.4409585-CDS-H-elongata_contig54164:0..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1..123 -
1691679610.0396593-CDS-H-elongata_contig54164:0..1231691679610.0396593-CDS-H-elongata_contig54164:0..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1..123 -
1622930882.463365-CDS-H-elongata_contig54164:344..4571622930882.463365-CDS-H-elongata_contig54164:344..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 345..457 -
1691679610.0546312-CDS-H-elongata_contig54164:344..4571691679610.0546312-CDS-H-elongata_contig54164:344..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 345..457 -
1622930882.4803376-CDS-H-elongata_contig54164:769..8371622930882.4803376-CDS-H-elongata_contig54164:769..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 770..837 -
1691679610.0690904-CDS-H-elongata_contig54164:769..8371691679610.0690904-CDS-H-elongata_contig54164:769..837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 770..837 -
1622930882.5011456-CDS-H-elongata_contig54164:1202..12901622930882.5011456-CDS-H-elongata_contig54164:1202..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1203..1290 -
1691679610.0840907-CDS-H-elongata_contig54164:1202..12901691679610.0840907-CDS-H-elongata_contig54164:1202..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1203..1290 -
1622930882.5232563-CDS-H-elongata_contig54164:1736..18081622930882.5232563-CDS-H-elongata_contig54164:1736..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1737..1808 -
1691679610.0988662-CDS-H-elongata_contig54164:1736..18081691679610.0988662-CDS-H-elongata_contig54164:1736..1808Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 1737..1808 -
1622930882.5467517-CDS-H-elongata_contig54164:2096..21871622930882.5467517-CDS-H-elongata_contig54164:2096..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 2097..2187 -
1691679610.108772-CDS-H-elongata_contig54164:2096..21871691679610.108772-CDS-H-elongata_contig54164:2096..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 2097..2187 -
1622930882.5652378-CDS-H-elongata_contig54164:2780..28941622930882.5652378-CDS-H-elongata_contig54164:2780..2894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 2781..2894 -
1691679610.1177294-CDS-H-elongata_contig54164:2780..28941691679610.1177294-CDS-H-elongata_contig54164:2780..2894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54164 2781..2894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54164.12786.1prot_H-elongata_contig54164.12786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54164 1..2894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54164.12786.1

>prot_H-elongata_contig54164.12786.1 ID=prot_H-elongata_contig54164.12786.1|Name=mRNA_H-elongata_contig54164.12786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
KSKSGALWSVDSIGNTVFSSVLEFRISGKGDRFFGDGLAVWVVEPERLHD
FDDLHYGDYYGDDLHFGWGGGIKELRADLPAGDYHGFVEKFKGLGVIVDT
YRNEEFYSAHKDVTVVLNTGNMTREEMIKASVGCNAQVRYYENRDDFFPG
SSSSRLKVEVSGNVLTVKVDPKHSNTWTDCTQLELPAEMGKEWTKGAHLG
LTASTGELSDNHDVVRLETYVSS
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mRNA from alignment at H-elongata_contig54164:1..2894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54164.12786.1 ID=mRNA_H-elongata_contig54164.12786.1|Name=mRNA_H-elongata_contig54164.12786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2894bp|location=Sequence derived from alignment at H-elongata_contig54164:1..2894- (Himanthalia elongata Himel1 dioecious)
AAGAGCAAGTCGGGGGCGCTTTGGTCAGTGGATTCGATCGGGAACACGGT CTTCTCGTCCGTCCTCGAGTTCAGAATATCCGGCAAGGGCGATAGATTTT TCGGGGATGGTCTGGTGAGCTGCTGCGACCCCTGAAGAGTGGGAAGCTGT TACCTGGCTGTAAGAGACGCGAACGTTCTATCTTTAGAGGGTACTCATTC AAACATTTTATGCTCGTAGGACATACCGTAGCTTCAGCAGCAGCTTTGGA TCGGCGCGGTTCTCGATGAATTTTGGCCTCGATGTGACTTCGTCGTGTAC AGTGCAGTTCAACGATATCTTGGGCCCCGTCAAGCATTCATCGCGGGGAC GAGCGATGAATCGCTCGCAGAACATTTGGTTAGCTTGTTAGTCAGTGCCC CCCGCCGCTGCCGGTATAGCCTGTTGCCATTTTTGTTTCTGTCATTCCGC TCTGCCGCTGGTTGATTAACTGCCAACTTATGTACCTGCCATAGCACGTT TCTTTGCTTTACCCTTAGAGCGATGCCTGTGCTTGGAAGTCCATAGCTTG TGCCTGGTTTGTGTCTATAAATTTATCGTTAGATTACTTTGACAATCGTA TTTTTCGGCTGGTTCTTCCGAAGAAAATGTCGCTTTGAGTAAAAAAGTGT AACGGTACGGCCTCGGAATCAGAAACATTTGCCCTTGCAAACCACTGACG AAAACAGGCTGTTTGGGTCGTGGAGCCTGAGCGATTGCACGATTTCGACG ACCTCCACTACGGCGACTATTACGGCGACGATCTCCACTTCGGCTGGGGT GAAAACTCCCCAGGATTTTTTGTTGTTGCTGTTGACCATAGATCCCACGA CATTTTGTCGACTCTCGACTCTGTCAGCAGCAGCAGGTAGCCGTGCGTCG CTGGCTGCTCTTTTGTGACGGATTTGCGTTGGGAAACTATGGCCAGACCT CAGTGCTTGCTGTTGGCCCATATACCTCGAAGATACGTTTTCAAAAGAAC GCTGACAGCATCTACCGCGGCGAACCGAGCTCTTACCGCTACGTTCGCGT CGTTCATGTGCGTCTTCCGCCGGGTGTATGCTTCAGGCGGAGGAATCAAA GAGCTCAGGGCGGATCTGCCCGCTGGGGACTACCACGGCTTCGTCGAGAA GTTCAAGGGTGGGCTTACGCCGGAGCCTTTGTGTTTTCATAGCTTTGTTC TAGTTTTTTTTGTCTGGTAATGGTTTGGTTGCCATAGGCATTTGAGGGTG ATCATGCCACCCCCTCTCTCGCTAGGCTGTGCGTACGATGGTCGATGATT ATTATTCTTCCGTCTTTTGCTCAAGGTCTAAGAAATTAAAAGTGGGAGGA AAACAAAAAAACGTACCATAGACGGAGAAATGTGCGGAATAACCCCCTAC ACACCCCCTACCATGCTTTCTCTCTTGAAGCATAAGGAACGTAAGGTCCC TGTAGTGGCTTCAAAAACCTATAGGCTTTGAAATAATGCTGGATGTTGCG TGTAACAGGAGTAGAAGGGAAGGGGGTGTCGCATGGTGCCGGCACTTGTA AGTCCTCCCTCCTTATCTTCCCTCCTATCCGCAAACGAACGTGTGTCGGG GCAGGGCTGGGGGTGATTGTGGACACGTACCGCAACGAGGAGTTCTACAG CGCGCACAAGGATGTCACCGTCGTCCTTAACACGGGGAACATGTGAGTTT CACACACGCAGACAACGGTGATTCATTTCTCAACGTCGCCCCGAGTCTGA CACCTACATTCTCGACGGTCAGCCCAAGAGGAAAATGCTGACATGTCGGT TTCGTTGAATGGATTGATAGTCGCGAGGCGTGCGTTCGACCGATGCAGAG CCGGGGGGAATTATATATAGATACATACATTTTGGAGGTAAAATCATCAT GCGCCTGTGTTTGATAAAGGGCGTGGTATTTAACCTCTCTCCTTCGCCTA GTATGTGTATAATTTACATCAAAAATAAATAAACAAAGCGTTTTTCCCGC TCCTAGAGAACTCCGGCTCAGCACAATTTGTTCCCGTCTTCTTCCCTCTT CGACTAGGACACGGGAAGAGATGATCAAGGCCTCCGTGGGGTGTAACGCC CAGGTTCGCTACTACGAGAATCGAGGTGAGGGGTATTATGGAGATGTGTC TCGGTTAGAGGGGATTCTGTGTAGGGGGCTGGTGGTGAGGGATTCAGCAA AAAAGTGTTACGTAATTCAGTAGCATGTTGGGATCCCCCAAGGTCGTCGA TAGGCCGTAGGGTGCTGGCGCGTTTTGTTATCGCGCGTGTGATAACTTGC GTATATCATGTAGAATGCCTCTGGACACTCCACGGCACCACTTCCGAACA TCATAACCGAAGTTACTGCTGGAGATTTGAACCCTTTGTGTGTGCGCGTG TATTTTTTCTCATCTAACGTGTGTCTTTTACCCATAGACGATTTCTTTCC GGGATCTTCTTCGTCGCGACTGAAGGTGGAAGTTTCCGGTAATGTTCTCA CGGTAAAGGTCGATCCGAAGCACTCCAACACTTGGACGGACTGTACCCAG GTGCGCGAGACGTTCCCGGCGAAATACGGCACATCGCACCGCAAGACAGG GATCTATACCCCCGCGCATAAAGGGCGTTTGAGTTTTGCCCGCGGGGTTG CTTTGTTTGCCCATTGCCAAAACATTTATTTATTTTGTCGTTTGGTTTGG TAACTGCCGAATCTTACCCACCGACCCGGACGAAAACAATGCGTCTTTTT TCTCCCCGTGGACGCGAAAAGCTCGAGCTGCCAGCGGAAATGGGAAAAGA GTGGACAAAAGGAGCACACCTGGGCCTCACCGCGAGCACCGGGGAGCTTT CGGACAACCACGACGTCGTGCGTCTTGAAACGTACGTGAGTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig54164:1..2894-

>mRNA_H-elongata_contig54164.12786.1 ID=mRNA_H-elongata_contig54164.12786.1|Name=mRNA_H-elongata_contig54164.12786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig54164:1..2894- (Himanthalia elongata Himel1 dioecious)
AAGAGCAAGTCGGGGGCGCTTTGGTCAGTGGATTCGATCGGGAACACGGT
CTTCTCGTCCGTCCTCGAGTTCAGAATATCCGGCAAGGGCGATAGATTTT
TCGGGGATGGTCTGAAGAGCAAGTCGGGGGCGCTTTGGTCAGTGGATTCG
ATCGGGAACACGGTCTTCTCGTCCGTCCTCGAGTTCAGAATATCCGGCAA
GGGCGATAGATTTTTCGGGGATGGTCTGGCTGTTTGGGTCGTGGAGCCTG
AGCGATTGCACGATTTCGACGACCTCCACTACGGCGACTATTACGGCGAC
GATCTCCACTTCGGCTGGGGCTGTTTGGGTCGTGGAGCCTGAGCGATTGC
ACGATTTCGACGACCTCCACTACGGCGACTATTACGGCGACGATCTCCAC
TTCGGCTGGGGCGGAGGAATCAAAGAGCTCAGGGCGGATCTGCCCGCTGG
GGACTACCACGGCTTCGTCGAGAAGTTCAAGGGCGGAGGAATCAAAGAGC
TCAGGGCGGATCTGCCCGCTGGGGACTACCACGGCTTCGTCGAGAAGTTC
AAGGGGCTGGGGGTGATTGTGGACACGTACCGCAACGAGGAGTTCTACAG
CGCGCACAAGGATGTCACCGTCGTCCTTAACACGGGGAACATGGCTGGGG
GTGATTGTGGACACGTACCGCAACGAGGAGTTCTACAGCGCGCACAAGGA
TGTCACCGTCGTCCTTAACACGGGGAACATGACACGGGAAGAGATGATCA
AGGCCTCCGTGGGGTGTAACGCCCAGGTTCGCTACTACGAGAATCGAGGA
CACGGGAAGAGATGATCAAGGCCTCCGTGGGGTGTAACGCCCAGGTTCGC
TACTACGAGAATCGAGACGATTTCTTTCCGGGATCTTCTTCGTCGCGACT
GAAGGTGGAAGTTTCCGGTAATGTTCTCACGGTAAAGGTCGATCCGAAGC
ACTCCAACACTTGGACGGACTGTACCCAGACGATTTCTTTCCGGGATCTT
CTTCGTCGCGACTGAAGGTGGAAGTTTCCGGTAATGTTCTCACGGTAAAG
GTCGATCCGAAGCACTCCAACACTTGGACGGACTGTACCCAGCTCGAGCT
GCCAGCGGAAATGGGAAAAGAGTGGACAAAAGGAGCACACCTGGGCCTCA
CCGCGAGCACCGGGGAGCTTTCGGACAACCACGACGTCGTGCGTCTTGAA
ACGTACGTGAGTTCCCTCGAGCTGCCAGCGGAAATGGGAAAAGAGTGGAC
AAAAGGAGCACACCTGGGCCTCACCGCGAGCACCGGGGAGCTTTCGGACA
ACCACGACGTCGTGCGTCTTGAAACGTACGTGAGTTCC
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