mRNA_H-elongata_contig54150.12784.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.260e-22 Identity = 62/147 (42.18%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGD-----TAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSE-GSSNVEIVR 426
RCRL SPATGLV MQEN FL FF +GF+P+TT S+IRET+V++M ++ G ++ +PG +A ++P S C FWCAV LGALV G IESV SY LA++AL +S G + E+ +
Sbjct: 6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPM--------DPSACTFWCAVALGALVKGSPIESVTSYAQLAQEALAKSNSGPGDAEVAK 144
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.530e-22 Identity = 65/154 (42.21%), Postives = 79/154 (51.30%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPR-------FEND------HGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
R R SPATGLVGMQEN L FF +GF+P+TT+S IR +VRMMT+ +P PG APH P F D +TG S C FWCAV LGALV G +ESV +Y LA+DAL G + E+ +
Sbjct: 25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTS------------------STPHHQPG--APHDSPAQGHFGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESVVNYSRLARDALDAYTGPVDAEVAK 158
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 6.200e-22 Identity = 66/148 (44.59%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWS----SPGDTAPHRVPR--FENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSE-GSSNVEIVR 426
RCRL SPATGLVGMQEN FL FF +GF+P+TT S IRET+V +M PR + +G+ +E +PG R F D A C FWCAV LGAL G IESV SY LA++AL +S G + E+ +
Sbjct: 10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIML----PRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSA-----CTFWCAVALGALAKGSPIESVTSYAQLAQEALAKSNSGPGDAEVAK 148
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI) HSP 1 Score: 100 bits (249), Expect = 6.510e-22 Identity = 62/142 (43.66%), Postives = 80/142 (56.34%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
R RL SPATGLVGMQEN FL FF +GF+P+TT S IR +VRMMT P R ++ + +S G T +++ + G S C FWCAV +GALV G +ESV +Y LA+DAL G N E+ +
Sbjct: 25 RFRLNASPATGLVGMQENVFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQL--------SAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEVAK 158
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 9.210e-22 Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
RCRL SPATGLVGMQEN FL FF +GF+P+TT+S +R +VRMM +++ R ++ + +S G T +++ +TG S C FWCAV +GALV G+ ESV Y LA+ AL G + E+ +
Sbjct: 95 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGNQL--------STGPSACTFWCAVGVGALVKGRPAESVTIYSRLARGALDAYTGPVDAEVAK 228
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.660e-21 Identity = 62/140 (44.29%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEI 420
R RL SPATGLVGMQEN FL FF +GF+P+TT S IR +VRMMT P R ++ + +S G T +++ + G S C FWCAV +GALV G +ESV +Y LA+DAL G N E+
Sbjct: 25 RFRLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQL--------SAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEV 156
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.320e-21 Identity = 63/141 (44.68%), Postives = 76/141 (53.90%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
R RL SPATGLVGMQEN FL FF +GF+P+TT S IR +VRMMT P QL + +SP D +TG S C FWCAV +GALV G +E V +Y LA+DAL G N E+ +
Sbjct: 98 RFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPH--QLGASY-----DSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLARDALNAYTGPVNAEVAK 231
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 8.010e-21 Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESPWSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESV 354
RC+ K SPATGLVGM EN FL FF +GFVP+TTQS IRET+V+MM T ++ R + DE+ + GD R+ EN A G S C FWCAV LGALV G + SV
Sbjct: 96 RCKFKASPATGLVGMPENTFLGDFFACVGFVPLTTQSHIRETMVKMMVTSTPSQKSAFGR---DCDEDDVLAKEGDI---RILSAENQLDA-GPSTCTFWCAVALGALVKGGGVASV 205
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D7FTD5_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD5_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 1.170e-20 Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 4 RCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRR------VQLRRGWGEKDEESPWSSPGDTAPHRVPR--FENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
RCRL+ SPATGLVGM+E+ FL FF G +P+TT+S +R +V +M PR+ + +R W E + E G + V R + DH A++C+ WCA+ LGAL+ G +E VE YV LA+++L ++E R
Sbjct: 141 RCRLRASPATGLVGMKESGFLCDFFGCFGILPLTTESTVRNAMVEIMMGAELPRKRYNEEHLGVRTRWAEDEGEG--EEKGCSGDRTVVRRGTQPDH----AAMCMMWCAIALGALMRGVPVEHVEMYVNLARESLAECFDGRSIEHAR 283
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Match: D8LU18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.810e-20 Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 1 SRCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTVPKPRRVQLRRGWGEKDEESP-WSSPGDTAPHRVPRFENDHGATGASICLFWCAVTLGALVMGQRIESVESYVCLAKDALRRSEGSSNVEIVR 426
+R RL SPATGLVGMQEN FL FF +G +P+TT S +R +VRMMT +++ E+ + ++ G T +++ TG S C FWCAV +GA++ G+ ESV Y LA+DAL G N E+ +
Sbjct: 59 TRFRLSASPATGLVGMQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGNQL--------LTGPSCCTFWCAVGVGAIMKGRTAESVAKYSRLARDALDAYNGPVNAEVAK 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54150.12784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54150.12784.1 >prot_H-elongata_contig54150.12784.1 ID=prot_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp SRCRLKVSPATGLVGMQENYFLKSFFDSLGFVPVTTQSKIRETIVRMMTTback to top mRNA from alignment at H-elongata_contig54150:2600..3821- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54150.12784.1 ID=mRNA_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1222bp|location=Sequence derived from alignment at H-elongata_contig54150:2600..3821- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54150:2600..3821- >mRNA_H-elongata_contig54150.12784.1 ID=mRNA_H-elongata_contig54150.12784.1|Name=mRNA_H-elongata_contig54150.12784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig54150:2600..3821- (Himanthalia elongata Himel1 dioecious)back to top |