mRNA_H-elongata_contig54126.12782.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: D7FYI6_ECTSI (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI6_ECTSI) HSP 1 Score: 379 bits (972), Expect = 9.980e-130 Identity = 197/267 (73.78%), Postives = 225/267 (84.27%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR-GGGLANALQAKLGL 798
PLQEA DPETGRRYL+CEYNRDASSYRSPWSNKYDPP+EDGFTPGDRLRQME DANMLLDAYREVY++GGVSSVYLW+ E +G AAGSFAGCFLILKRVGG+GE G +G+WESSHVVQ+ L + + +ATYK+NTTVMLSV PEDE G TSLSGNL+R KEE++ F+ DSDHL+N+G+MIEAMENTLRSDMDGLYVQKTRQI+SS+RSTR ASA LQSPFAAQL+GA+GQHG +R GG L +AL AKLG+
Sbjct: 48 PLQEATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEE------DANMLLDAYREVYFSGGVSSVYLWEEE---ADGEADNATGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVGPEDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAARLQSPFAAQLQGAVGQHGARRQGGDLMSALNAKLGV 305
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A835YY13_9STRA (F-actin-capping protein subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY13_9STRA) HSP 1 Score: 248 bits (633), Expect = 2.460e-78 Identity = 147/273 (53.85%), Postives = 174/273 (63.74%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGV-----------TSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKRGGGLANALQA 786
PLQEA DP TGR+YL CEYNRDA SYRSPWSN YDPPLED + D+LRQ+E +DAN LLDAYRE+YY GG SSVYLWDLE+ + G FAG FLI K EG A WES HV+Q++ D KRATYKLN+T+MLSV TSLSGN++ A E++ AFA DHL N+G MIE MEN +R +DG+YVQKTRQIL S+R + +ASA + F +QL AIG HG KR GGLA + A
Sbjct: 45 PLQEATDPVTGRQYLLCEYNRDADSYRSPWSNAYDPPLEDAYELRDQLRQLE------IDANELLDAYRELYYQGGTSSVYLWDLEEGSGKG-----------FAGAFLIKKST---AEGTA---WESIHVIQVDPDVGGGKRATYKLNSTIMLSVQXXXXXXXXXXXXXXXXXXXTSLSGNMTSAAEQTLAFASQDDHLSNIGKMIEKMENDVRMSIDGVYVQKTRQILCSVRRS-NASAPAQGAAFTSQLNQAIGAHGAKRDGGLAAQIAA 293
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A6H5KTN9_9PHAE (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN9_9PHAE) HSP 1 Score: 200 bits (509), Expect = 1.180e-61 Identity = 103/147 (70.07%), Postives = 121/147 (82.31%), Query Frame = 1
Query: 187 MLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDG 627
MLLDAYREVY++GGVSSVYLW E+ AE G AAGSFAGCFLILKRVGG+GE G G+WESSHVVQ+ L + + +ATYK+NTTVMLSV P+DE G TSLSGNL+R KEE++ F+ DSDHL+N+G+MIEAMENTLRSDMDG
Sbjct: 1 MLLDAYREVYFSGGVSSVYLW--EEEAEGGADNA-TGAAGSFAGCFLILKRVGGDGEEGPAGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVDPKDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDG 144
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S4A8I8_9STRA (F-actin-capping protein subunit beta n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8I8_9STRA) HSP 1 Score: 206 bits (524), Expect = 1.580e-61 Identity = 111/248 (44.76%), Postives = 158/248 (63.71%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQH 744
PL+EAK +TGR YL C+YNRD S+RSPWSNKYDPP++DGF P ++LR++E V+AN L D YRE+Y+ GG SSVYLW+L+ FAGCFLI K+V G E G W+S HVV++ L+ + K A YKL TTV+L++ + E G T+LSG L+R E+ + H+ N+G +IE E +R +MD LY+QKTR++++++RS ++ + G + F A L A+ +H
Sbjct: 111 PLEEAKCKDTGRAYLLCDYNRDGDSHRSPWSNKYDPPIDDGFVPSEKLRRLE------VEANTLFDCYRELYFEGGTSSVYLWELDGD--------------DFAGCFLIKKKVSGH-EFVTEGCWDSIHVVEVNLE-DNGKAANYKLTTTVILTMDVQKESVGDTNLSGTLTRTAEKRSVIDAEHTHMHNMGTLIEDTETDIRVNMDALYIQKTREVVNNIRSPQTGPSQG--AAFTASLNEAVKRH 334
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A6U4L9K2_9STRA (F-actin-capping protein subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L9K2_9STRA) HSP 1 Score: 204 bits (518), Expect = 2.720e-61 Identity = 114/252 (45.24%), Postives = 156/252 (61.90%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
PL+E +G++YL C+YNRD SYRSPWSN+YDPPL+DGF P ++LR ME + AN L D+YRE+Y+ GG SSVYLWDL+ A FAGCFL+ K + G A GSW S HV+++ ++ K+A+YKL TTV+LS + E G T LSG+L+R K + + HL N+G +IE ME +RS+M+ LYVQKTR+I++S+RS A+ ++ F L A+ HG R
Sbjct: 50 PLEEGTCSASGKKYLMCDYNRDGDSYRSPWSNQYDPPLDDGFVPSEQLRNME------IQANELFDSYRELYFEGGTSSVYLWDLDGAG--------------FAGCFLVKKSIESTGVVKA-GSWNSIHVIEVS-EQDGGKKASYKLTTTVLLSADVDKPECGSTDLSGSLTRQKARTCEINAEHTHLSNMGEIIEDMETEMRSNMNALYVQKTREIVNSIRSM--ATGPKQEADFVNSLNAAVMAHGDTR 277
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: F0YCA6_AURAN (F-actin-capping protein subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA6_AURAN) HSP 1 Score: 201 bits (511), Expect = 2.810e-60 Identity = 116/252 (46.03%), Postives = 152/252 (60.32%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
PL+EA E+GR+YL C+YNRD SYRSPWSN Y+PPL+DGF P +LR +E V+AN L DAYRE+Y+ GG SSVYLWDL+ G FAGCFLI K V G E + G+W+S HVV++ RATYKL TTVMLS+ G ++LSG+L+R E++ A H+ N+G MIE ME +R+ +D LY+QKTR+++SS+R F L A+ +HG R
Sbjct: 49 PLEEATCAESGRKYLLCDYNRDGDSYRSPWSNAYEPPLDDGFVPSAKLRALE------VEANALFDAYRELYFEGGTSSVYLWDLD---------------GGFAGCFLIKKGVSGH-EFVSTGAWDSIHVVEVA--EAGDGRATYKLTTTVMLSMDVHKPAVGDSNLSGSLTRMAEKACAVDEAHPHVANIGSMIEDMETDIRTYLDSLYIQKTREVVSSIRKLHKGPTQ--DKGFTMNLNSAVLKHGKNR 274
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S2F5N5_9STRA (F-actin-capping protein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N5_9STRA) HSP 1 Score: 200 bits (508), Expect = 7.950e-60 Identity = 120/253 (47.43%), Postives = 153/253 (60.47%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTR-SASALGLQSPFAAQLKGAIGQHGVKR 756
PLQEA +TGR +L C+YNRD SYRSPWSN+YDPP++DGFTP + LRQME +DAN L D+YR+ YY GG SSVYLWDL+D FAGCFLI K V G A GSW+S HVV++ +ATYKL +T++LS+ G ++LSG +++ KE + H N+G MIE ME LRS+MD LY+ KTR+I+SSMR+ R A G F L A+ HG K+
Sbjct: 50 PLQEATCGQTGRPFLLCDYNRDGDSYRSPWSNQYDPPIDDGFTPSEALRQME------IDANSLYDSYRDQYYEGGTSSVYLWDLDDG---------------FAGCFLIKKSVEGHAFVSA-GSWDSIHVVEVT--EKGGGQATYKLTSTLLLSMGVNKAAVGDSNLSGCMTKQKEMTCEVTAVRPHTTNMGTMIEDMEIELRSNMDSLYISKTREIVSSMRNMRLRAPVQGAN--FTNSLNQAVLGHGAKK 276
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S2BI12_9STRA (F-actin-capping protein subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI12_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.320e-58 Identity = 117/255 (45.88%), Postives = 152/255 (59.61%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGAL---GSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
PL+EA T ++YL C+YNRD SYRSPWSN Y+P L+DGF P D LR ME VDAN L D+YRE YY GGVSSVYLWDL+ FAGCFL+ K V +G A G W+S HVV++ ++ D K ATYKL +T+ML++ + G ++LSG +++ KE + H+ N+G MIE ME +RS+MD LY+QKTR+I++SMR A G F A L A+ HG R
Sbjct: 48 PLEEATCSVTKKKYLLCDYNRDGDSYRSPWSNAYEPALDDGFQPSDALRAME------VDANTLYDSYREQYYEGGVSSVYLWDLDTG---------------FAGCFLVKKTV----QGHAFVSDGGWDSIHVVEVT-EKGDGK-ATYKLTSTLMLTMGVQKASVGDSNLSGCMTKQKELTLPVTEVKPHIVNIGSMIEDMEIDMRSNMDNLYIQKTREIVNSMRRVTGAPKQGQN--FTANLNAAVAAHGASR 273
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: F2UF43_SALR5 (F-actin-capping protein subunit beta n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF43_SALR5) HSP 1 Score: 192 bits (488), Expect = 5.850e-57 Identity = 108/241 (44.81%), Postives = 148/241 (61.41%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQL 723
PL+ AKD +GR YL C+YNRDA SYRSPWSNKYDPPLEDG P D LR++E + AN D YRE+YY GGVSSVYLWDL++ FAG LI K+V G+G G ++S HV +++ S ATYKL +TVML + E +G+ L G+L+R E++ + S H+ N+G M+E MEN +R+ +D +Y KT+ +++S+RS S+ GL+ A+L
Sbjct: 46 PLKIAKDEASGRDYLLCDYNRDADSYRSPWSNKYDPPLEDGAVPSDSLRELE------IQANQAFDTYRELYYEGGVSSVYLWDLQEG---------------FAGVILI-KKV-GDGSKKIKGCYDSIHVFEVQETSRGSN-ATYKLTSTVMLWLETNKETSGMMQLGGSLTRQAEKTLTVSQSSPHIANIGTMVEDMENNMRNTLDQIYFGKTKDVVNSLRSVNPLSSEGLKKDLQAEL 262
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A8K1CER9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CER9_PYTOL) HSP 1 Score: 192 bits (489), Expect = 6.060e-57 Identity = 109/255 (42.75%), Postives = 155/255 (60.78%), Query Frame = 1
Query: 1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLED--GFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQI-ELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
PLQ A DP GR+YL C+YNRD S+RSPWSNKYDPP++D GF P + LR++E + AN + D+YRE+YY GG+SSVY+WDL+ FA CFL+ K V + GSW S HV+++ EL+ K+A Y+L TTV+L++ + E G +L G L+R E++ + H+ N+G M+E ME +RS MDGLY+ KTR++++ MR + + F +L GAI QHG+K+
Sbjct: 48 PLQVAIDPLNGRKYLLCDYNRDGDSHRSPWSNKYDPPVQDDEGFYPSENLRELE------IQANEIFDSYRELYYQGGISSVYMWDLDPG---------------FAACFLVKKDVIDQ-RFVENGSWNSIHVLEVQELNEPGVKKAHYRLTTTVLLAMKVKRAELGDLTLDGTLTRQVEKTLEYEDQFSHVSNMGRMVEDMEIDMRSSMDGLYISKTREVINGMRKLQQGPMQA--NAFVGELTGAILQHGLKK 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54126.12782.1 >prot_H-elongata_contig54126.12782.1 ID=prot_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQback to top mRNA from alignment at H-elongata_contig54126:1430..3269- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54126.12782.1 ID=mRNA_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1840bp|location=Sequence derived from alignment at H-elongata_contig54126:1430..3269- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54126:1430..3269- >mRNA_H-elongata_contig54126.12782.1 ID=mRNA_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig54126:1430..3269- (Himanthalia elongata Himel1 dioecious)back to top |