mRNA_H-elongata_contig54126.12782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54126.12782.1
Unique NamemRNA_H-elongata_contig54126.12782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: D7FYI6_ECTSI (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI6_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 9.980e-130
Identity = 197/267 (73.78%), Postives = 225/267 (84.27%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR-GGGLANALQAKLGL 798
            PLQEA DPETGRRYL+CEYNRDASSYRSPWSNKYDPP+EDGFTPGDRLRQME       DANMLLDAYREVY++GGVSSVYLW+ E    +G       AAGSFAGCFLILKRVGG+GE G +G+WESSHVVQ+ L + +  +ATYK+NTTVMLSV PEDE  G TSLSGNL+R KEE++ F+ DSDHL+N+G+MIEAMENTLRSDMDGLYVQKTRQI+SS+RSTR ASA  LQSPFAAQL+GA+GQHG +R GG L +AL AKLG+
Sbjct:   48 PLQEATDPETGRRYLRCEYNRDASSYRSPWSNKYDPPIEDGFTPGDRLRQMEE------DANMLLDAYREVYFSGGVSSVYLWEEE---ADGEADNATGAAGSFAGCFLILKRVGGDGEEGPVGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVGPEDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDGLYVQKTRQIVSSVRSTRGASAARLQSPFAAQLQGAVGQHGARRQGGDLMSALNAKLGV 305          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A835YY13_9STRA (F-actin-capping protein subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY13_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.460e-78
Identity = 147/273 (53.85%), Postives = 174/273 (63.74%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGV-----------TSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKRGGGLANALQA 786
            PLQEA DP TGR+YL CEYNRDA SYRSPWSN YDPPLED +   D+LRQ+E      +DAN LLDAYRE+YY GG SSVYLWDLE+ +  G           FAG FLI K      EG A   WES HV+Q++ D    KRATYKLN+T+MLSV                    TSLSGN++ A E++ AFA   DHL N+G MIE MEN +R  +DG+YVQKTRQIL S+R + +ASA    + F +QL  AIG HG KR GGLA  + A
Sbjct:   45 PLQEATDPVTGRQYLLCEYNRDADSYRSPWSNAYDPPLEDAYELRDQLRQLE------IDANELLDAYRELYYQGGTSSVYLWDLEEGSGKG-----------FAGAFLIKKST---AEGTA---WESIHVIQVDPDVGGGKRATYKLNSTIMLSVQXXXXXXXXXXXXXXXXXXXTSLSGNMTSAAEQTLAFASQDDHLSNIGKMIEKMENDVRMSIDGVYVQKTRQILCSVRRS-NASAPAQGAAFTSQLNQAIGAHGAKRDGGLAAQIAA 293          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A6H5KTN9_9PHAE (F-actin-capping protein subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.180e-61
Identity = 103/147 (70.07%), Postives = 121/147 (82.31%), Query Frame = 1
Query:  187 MLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDG 627
            MLLDAYREVY++GGVSSVYLW  E+ AE G       AAGSFAGCFLILKRVGG+GE G  G+WESSHVVQ+ L + +  +ATYK+NTTVMLSV P+DE  G TSLSGNL+R KEE++ F+ DSDHL+N+G+MIEAMENTLRSDMDG
Sbjct:    1 MLLDAYREVYFSGGVSSVYLW--EEEAEGGADNA-TGAAGSFAGCFLILKRVGGDGEEGPAGAWESSHVVQVVLSKKNPTQATYKVNTTVMLSVDPKDEAVGATSLSGNLAREKEETKTFSTDSDHLQNLGVMIEAMENTLRSDMDG 144          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S4A8I8_9STRA (F-actin-capping protein subunit beta n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8I8_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.580e-61
Identity = 111/248 (44.76%), Postives = 158/248 (63.71%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQH 744
            PL+EAK  +TGR YL C+YNRD  S+RSPWSNKYDPP++DGF P ++LR++E      V+AN L D YRE+Y+ GG SSVYLW+L+                 FAGCFLI K+V G  E    G W+S HVV++ L+  + K A YKL TTV+L++  + E  G T+LSG L+R  E+      +  H+ N+G +IE  E  +R +MD LY+QKTR++++++RS ++  + G  + F A L  A+ +H
Sbjct:  111 PLEEAKCKDTGRAYLLCDYNRDGDSHRSPWSNKYDPPIDDGFVPSEKLRRLE------VEANTLFDCYRELYFEGGTSSVYLWELDGD--------------DFAGCFLIKKKVSGH-EFVTEGCWDSIHVVEVNLE-DNGKAANYKLTTTVILTMDVQKESVGDTNLSGTLTRTAEKRSVIDAEHTHMHNMGTLIEDTETDIRVNMDALYIQKTREVVNNIRSPQTGPSQG--AAFTASLNEAVKRH 334          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A6U4L9K2_9STRA (F-actin-capping protein subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L9K2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.720e-61
Identity = 114/252 (45.24%), Postives = 156/252 (61.90%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
            PL+E     +G++YL C+YNRD  SYRSPWSN+YDPPL+DGF P ++LR ME      + AN L D+YRE+Y+ GG SSVYLWDL+ A               FAGCFL+ K +   G   A GSW S HV+++  ++   K+A+YKL TTV+LS   +  E G T LSG+L+R K  +     +  HL N+G +IE ME  +RS+M+ LYVQKTR+I++S+RS   A+    ++ F   L  A+  HG  R
Sbjct:   50 PLEEGTCSASGKKYLMCDYNRDGDSYRSPWSNQYDPPLDDGFVPSEQLRNME------IQANELFDSYRELYFEGGTSSVYLWDLDGAG--------------FAGCFLVKKSIESTGVVKA-GSWNSIHVIEVS-EQDGGKKASYKLTTTVLLSADVDKPECGSTDLSGSLTRQKARTCEINAEHTHLSNMGEIIEDMETEMRSNMNALYVQKTREIVNSIRSM--ATGPKQEADFVNSLNAAVMAHGDTR 277          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: F0YCA6_AURAN (F-actin-capping protein subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA6_AURAN)

HSP 1 Score: 201 bits (511), Expect = 2.810e-60
Identity = 116/252 (46.03%), Postives = 152/252 (60.32%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
            PL+EA   E+GR+YL C+YNRD  SYRSPWSN Y+PPL+DGF P  +LR +E      V+AN L DAYRE+Y+ GG SSVYLWDL+               G FAGCFLI K V G  E  + G+W+S HVV++        RATYKL TTVMLS+       G ++LSG+L+R  E++ A      H+ N+G MIE ME  +R+ +D LY+QKTR+++SS+R             F   L  A+ +HG  R
Sbjct:   49 PLEEATCAESGRKYLLCDYNRDGDSYRSPWSNAYEPPLDDGFVPSAKLRALE------VEANALFDAYRELYFEGGTSSVYLWDLD---------------GGFAGCFLIKKGVSGH-EFVSTGAWDSIHVVEVA--EAGDGRATYKLTTTVMLSMDVHKPAVGDSNLSGSLTRMAEKACAVDEAHPHVANIGSMIEDMETDIRTYLDSLYIQKTREVVSSIRKLHKGPTQ--DKGFTMNLNSAVLKHGKNR 274          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S2F5N5_9STRA (F-actin-capping protein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N5_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.950e-60
Identity = 120/253 (47.43%), Postives = 153/253 (60.47%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTR-SASALGLQSPFAAQLKGAIGQHGVKR 756
            PLQEA   +TGR +L C+YNRD  SYRSPWSN+YDPP++DGFTP + LRQME      +DAN L D+YR+ YY GG SSVYLWDL+D                FAGCFLI K V G     A GSW+S HVV++        +ATYKL +T++LS+       G ++LSG +++ KE +        H  N+G MIE ME  LRS+MD LY+ KTR+I+SSMR+ R  A   G    F   L  A+  HG K+
Sbjct:   50 PLQEATCGQTGRPFLLCDYNRDGDSYRSPWSNQYDPPIDDGFTPSEALRQME------IDANSLYDSYRDQYYEGGTSSVYLWDLDDG---------------FAGCFLIKKSVEGHAFVSA-GSWDSIHVVEVT--EKGGGQATYKLTSTLLLSMGVNKAAVGDSNLSGCMTKQKEMTCEVTAVRPHTTNMGTMIEDMEIELRSNMDSLYISKTREIVSSMRNMRLRAPVQGAN--FTNSLNQAVLGHGAKK 276          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A7S2BI12_9STRA (F-actin-capping protein subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI12_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.320e-58
Identity = 117/255 (45.88%), Postives = 152/255 (59.61%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGAL---GSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
            PL+EA    T ++YL C+YNRD  SYRSPWSN Y+P L+DGF P D LR ME      VDAN L D+YRE YY GGVSSVYLWDL+                 FAGCFL+ K V    +G A    G W+S HVV++  ++ D K ATYKL +T+ML++  +    G ++LSG +++ KE +        H+ N+G MIE ME  +RS+MD LY+QKTR+I++SMR    A   G    F A L  A+  HG  R
Sbjct:   48 PLEEATCSVTKKKYLLCDYNRDGDSYRSPWSNAYEPALDDGFQPSDALRAME------VDANTLYDSYREQYYEGGVSSVYLWDLDTG---------------FAGCFLVKKTV----QGHAFVSDGGWDSIHVVEVT-EKGDGK-ATYKLTSTLMLTMGVQKASVGDSNLSGCMTKQKELTLPVTEVKPHIVNIGSMIEDMEIDMRSNMDNLYIQKTREIVNSMRRVTGAPKQGQN--FTANLNAAVAAHGASR 273          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: F2UF43_SALR5 (F-actin-capping protein subunit beta n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF43_SALR5)

HSP 1 Score: 192 bits (488), Expect = 5.850e-57
Identity = 108/241 (44.81%), Postives = 148/241 (61.41%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQL 723
            PL+ AKD  +GR YL C+YNRDA SYRSPWSNKYDPPLEDG  P D LR++E      + AN   D YRE+YY GGVSSVYLWDL++                FAG  LI K+V G+G     G ++S HV +++     S  ATYKL +TVML +    E +G+  L G+L+R  E++   +  S H+ N+G M+E MEN +R+ +D +Y  KT+ +++S+RS    S+ GL+    A+L
Sbjct:   46 PLKIAKDEASGRDYLLCDYNRDADSYRSPWSNKYDPPLEDGAVPSDSLRELE------IQANQAFDTYRELYYEGGVSSVYLWDLQEG---------------FAGVILI-KKV-GDGSKKIKGCYDSIHVFEVQETSRGSN-ATYKLTSTVMLWLETNKETSGMMQLGGSLTRQAEKTLTVSQSSPHIANIGTMVEDMENNMRNTLDQIYFGKTKDVVNSLRSVNPLSSEGLKKDLQAEL 262          
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Match: A0A8K1CER9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CER9_PYTOL)

HSP 1 Score: 192 bits (489), Expect = 6.060e-57
Identity = 109/255 (42.75%), Postives = 155/255 (60.78%), Query Frame = 1
Query:    1 PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLED--GFTPGDRLRQMEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAAAGSFAGCFLILKRVGGEGEGGALGSWESSHVVQI-ELDRHDSKRATYKLNTTVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAMENTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGVKR 756
            PLQ A DP  GR+YL C+YNRD  S+RSPWSNKYDPP++D  GF P + LR++E      + AN + D+YRE+YY GG+SSVY+WDL+                 FA CFL+ K V  +      GSW S HV+++ EL+    K+A Y+L TTV+L++  +  E G  +L G L+R  E++  +     H+ N+G M+E ME  +RS MDGLY+ KTR++++ MR  +        + F  +L GAI QHG+K+
Sbjct:   48 PLQVAIDPLNGRKYLLCDYNRDGDSHRSPWSNKYDPPVQDDEGFYPSENLRELE------IQANEIFDSYRELYYQGGISSVYMWDLDPG---------------FAACFLVKKDVIDQ-RFVENGSWNSIHVLEVQELNEPGVKKAHYRLTTTVLLAMKVKRAELGDLTLDGTLTRQVEKTLEYEDQFSHVSNMGRMVEDMEIDMRSSMDGLYISKTREVINGMRKLQQGPMQA--NAFVGELTGAILQHGLKK 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54126.12782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI6_ECTSI9.980e-13073.78F-actin-capping protein subunit beta n=1 Tax=Ectoc... [more]
A0A835YY13_9STRA2.460e-7853.85F-actin-capping protein subunit beta n=1 Tax=Tribo... [more]
A0A6H5KTN9_9PHAE1.180e-6170.07F-actin-capping protein subunit beta n=1 Tax=Ectoc... [more]
A0A7S4A8I8_9STRA1.580e-6144.76F-actin-capping protein subunit beta n=2 Tax=Pelag... [more]
A0A6U4L9K2_9STRA2.720e-6145.24F-actin-capping protein subunit beta n=1 Tax=Phaeo... [more]
F0YCA6_AURAN2.810e-6046.03F-actin-capping protein subunit beta n=1 Tax=Aureo... [more]
A0A7S2F5N5_9STRA7.950e-6047.43F-actin-capping protein subunit beta n=1 Tax=Dicty... [more]
A0A7S2BI12_9STRA2.320e-5845.88F-actin-capping protein subunit beta n=1 Tax=Flore... [more]
F2UF43_SALR55.850e-5744.81F-actin-capping protein subunit beta n=1 Tax=Salpi... [more]
A0A8K1CER9_PYTOL6.060e-5742.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54126contigH-elongata_contig54126:1430..3269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue7.3e-104
Seed eggNOG ortholog2880.D7FYI6
KEGG koko:K10365
KEGG Pathwayko04144,map04144
GOsGO:0000902,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008290,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009987,GO:0010639,GO:0015629,GO:0016043,GO:0030029,GO:0030036,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031333,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051493,GO:0051494,GO:0051693,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.barbed-end actin filament capping
EggNOG OGsKOG3174@1,KOG3174@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-actin-capping protein subunit beta
Ec32 orthologEc-23_003050.1
Exons5
Model size804
Cds size804
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54126.12782.1prot_H-elongata_contig54126.12782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54126 1430..3269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.8572783-CDS-H-elongata_contig54126:1429..16081622930881.8572783-CDS-H-elongata_contig54126:1429..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 1430..1608 -
1691679609.8682306-CDS-H-elongata_contig54126:1429..16081691679609.8682306-CDS-H-elongata_contig54126:1429..1608Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 1430..1608 -
1622930881.8738265-CDS-H-elongata_contig54126:1905..20771622930881.8738265-CDS-H-elongata_contig54126:1905..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 1906..2077 -
1691679609.8789976-CDS-H-elongata_contig54126:1905..20771691679609.8789976-CDS-H-elongata_contig54126:1905..2077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 1906..2077 -
1622930881.8849294-CDS-H-elongata_contig54126:2371..24251622930881.8849294-CDS-H-elongata_contig54126:2371..2425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 2372..2425 -
1691679609.8871732-CDS-H-elongata_contig54126:2371..24251691679609.8871732-CDS-H-elongata_contig54126:2371..2425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 2372..2425 -
1622930881.8986418-CDS-H-elongata_contig54126:2620..28451622930881.8986418-CDS-H-elongata_contig54126:2620..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 2621..2845 -
1691679609.8957632-CDS-H-elongata_contig54126:2620..28451691679609.8957632-CDS-H-elongata_contig54126:2620..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 2621..2845 -
1622930881.9240031-CDS-H-elongata_contig54126:3095..32691622930881.9240031-CDS-H-elongata_contig54126:3095..3269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 3096..3269 -
1691679609.9041417-CDS-H-elongata_contig54126:3095..32691691679609.9041417-CDS-H-elongata_contig54126:3095..3269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54126 3096..3269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54126.12782.1

>prot_H-elongata_contig54126.12782.1 ID=prot_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
PLQEAKDPETGRRYLQCEYNRDASSYRSPWSNKYDPPLEDGFTPGDRLRQ
MEASPDDTVDANMLLDAYREVYYTGGVSSVYLWDLEDAAENGVQGGGNAA
AGSFAGCFLILKRVGGEGEGGALGSWESSHVVQIELDRHDSKRATYKLNT
TVMLSVTPEDEEAGVTSLSGNLSRAKEESRAFAMDSDHLENVGMMIEAME
NTLRSDMDGLYVQKTRQILSSMRSTRSASALGLQSPFAAQLKGAIGQHGV
KRGGGLANALQAKLGLS*
back to top

mRNA from alignment at H-elongata_contig54126:1430..3269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54126.12782.1 ID=mRNA_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1840bp|location=Sequence derived from alignment at H-elongata_contig54126:1430..3269- (Himanthalia elongata Himel1 dioecious)
CCGTTGCAAGAAGCGAAAGACCCCGAGACTGGCCGACGATACCTGCAGTG CGAGTACAACCGGGACGCTAGCTCCTACCGCAGCCCCTGGAGCAACAAAT ATGATCCTCCTCTCGAGGATGGATTCACGCCTGGCGACCGCCTTCGACAG ATGGAGGCGAGTCCTGACGACACCGTGCAGTAGTCGCGCAGCGGCGCGTT CAAAGCGCCTTCAATCCGCACGATTGTGCTGCAGGAGCGACCGCGCATTC GCCCGTCAAGTCAAGGCTAGGTATGCGCAGCGCACAGAGAGTTGTGAGTG ATCAAGCGGATGGTGAGTATCGTCTGCGTGTCGTGAAATACAGATATCGC TCCGAGATGACGGTCTAGACGTACCCCCAAATTGTTATATCTTTGCCCTC CGTTGTTCACGCAATCCACGAAAGGTGGACGCAAACATGCTCCTCGACGC CTATCGCGAAGTCTACTATACGGGCGGGGTCAGTTCTGTGTACCTGTGGG ACCTGGAAGACGCGGCAGAGAACGGGGTTCAGGGCGGGGGCAATGCCGCC GCCGGAAGTTTCGCCGGTTGTTTCTTGATCCTCAAGCGAGTGGGCGGGGA GGGCGAAGGAGGCGCACTCGGGTCCTGGGAAAGCTCCCACGTGGTACAGG TGTGGAGTTTGCTCTGTCGCGGGATGACGCGGAGTTGCTACAGCGCCATG GTATATGATTCGTTCGTCGTTAGGTTAACTTGGTTGCTTGGAACGATTCT GTTCTTCCGGTACTTGATGTTTGAGTCGAACGCGATCCGATGGGCGTAGG CGTCGACACCGTTGCCTTCCGACGTATTTGCTCCACCGCCGCAGATCGAA CTGGACAGGCACGATTCCAAGAGAGCGACGTACAAGCTCAACACCACGGT CAGTGCTTGCTCCCCTCGAGACGGGAGCACGGGCATGTGATTCTTAGGGT GCACAGCGTTAGACCACATAGCACGTTTTCAGCTCTCCGTTTCTGCGCCG GTTGGTTTGGAGCGATGCGCAAGGTAGCTCAAAATGGACGCGTGATGGAT TGACTAGCGATTCTTTTACGTAAAACACCAAGCCTACCGCAGGACGTGCA CGTGTACGAAATAGACTTCAGCGGTGCGTCGCTCTGCCGGTCGCGGTCTG ATTTCCGTGCGCTGTATTAACTGCCCCCCTCCCTTTATGTAGGTTATGCT TTCGGTAACCCCTGAGGACGAAGAGGCGGGAGTAACGAGTCTCTCCGGCA ATCTCTCCAGGGCGAAGGAGGAGTCAAGGGCGTTCGCGATGGACAGTGAT CACCTCGAAAACGTAGGGATGATGATCGAGGCGATGGAAAACACACTAAG GAGTGATATGGACGGTGAGACTGGTCGGGCTTGGCTGGCGCGAAGGATGC AAAATGTCGTGTCGCCGAGTCAGTGCGAAAGGTGAAATCGTGGGTTTTGC AGCGAGCGCGGCGAAAAAATTGTGAGTTTATACCTTGTGCAGACAACCGG CGTCCTGATTTTCTACTAACCCGATATTTGCCGAGCTAATATGGACATTG GATATGGCGCCACATATCCCTGACCTGTTTTTATTGTTTTTACCCTCTGG CAGAATAATGACTCTGGCAGAGAAAACATCCTCCTTGTACCCGTTTAAAA TACTGCGGCAGGTCTTTACGTCCAAAAAACGCGGCAAATTTTGAGCAGCA TGCGCAGCACCCGGAGTGCCTCTGCTCTAGGACTCCAGAGTCCTTTCGCA GCTCAGTTGAAGGGCGCGATTGGACAACACGGAGTAAAGCGTGGGGGGGG GCTAGCCAACGCGCTTCAGGCGAAGCTTGGGCTATCGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54126:1430..3269-

>mRNA_H-elongata_contig54126.12782.1 ID=mRNA_H-elongata_contig54126.12782.1|Name=mRNA_H-elongata_contig54126.12782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig54126:1430..3269- (Himanthalia elongata Himel1 dioecious)
CCGTTGCAAGAAGCGAAAGACCCCGAGACTGGCCGACGATACCTGCAGTG
CGAGTACAACCGGGACGCTAGCTCCTACCGCAGCCCCTGGAGCAACAAAT
ATGATCCTCCTCTCGAGGATGGATTCACGCCTGGCGACCGCCTTCGACAG
ATGGAGGCGAGTCCTGACGACACCCCGTTGCAAGAAGCGAAAGACCCCGA
GACTGGCCGACGATACCTGCAGTGCGAGTACAACCGGGACGCTAGCTCCT
ACCGCAGCCCCTGGAGCAACAAATATGATCCTCCTCTCGAGGATGGATTC
ACGCCTGGCGACCGCCTTCGACAGATGGAGGCGAGTCCTGACGACACCGT
GGACGCAAACATGCTCCTCGACGCCTATCGCGAAGTCTACTATACGGGCG
GGGTCAGTTCTGTGTACCTGTGGGACCTGGAAGACGCGGCAGAGAACGGG
GTTCAGGGCGGGGGCAATGCCGCCGCCGGAAGTTTCGCCGGTTGTTTCTT
GATCCTCAAGCGAGTGGGCGGGGAGGGCGAAGGAGGCGCACTCGGGTCCT
GGGAAAGCTCCCACGTGGTACAGGTGGACGCAAACATGCTCCTCGACGCC
TATCGCGAAGTCTACTATACGGGCGGGGTCAGTTCTGTGTACCTGTGGGA
CCTGGAAGACGCGGCAGAGAACGGGGTTCAGGGCGGGGGCAATGCCGCCG
CCGGAAGTTTCGCCGGTTGTTTCTTGATCCTCAAGCGAGTGGGCGGGGAG
GGCGAAGGAGGCGCACTCGGGTCCTGGGAAAGCTCCCACGTGGTACAGAT
CGAACTGGACAGGCACGATTCCAAGAGAGCGACGTACAAGCTCAACACCA
CGATCGAACTGGACAGGCACGATTCCAAGAGAGCGACGTACAAGCTCAAC
ACCACGGTTATGCTTTCGGTAACCCCTGAGGACGAAGAGGCGGGAGTAAC
GAGTCTCTCCGGCAATCTCTCCAGGGCGAAGGAGGAGTCAAGGGCGTTCG
CGATGGACAGTGATCACCTCGAAAACGTAGGGATGATGATCGAGGCGATG
GAAAACACACTAAGGAGTGATATGGACGGTTATGCTTTCGGTAACCCCTG
AGGACGAAGAGGCGGGAGTAACGAGTCTCTCCGGCAATCTCTCCAGGGCG
AAGGAGGAGTCAAGGGCGTTCGCGATGGACAGTGATCACCTCGAAAACGT
AGGGATGATGATCGAGGCGATGGAAAACACACTAAGGAGTGATATGGACG
GTCTTTACGTCCAAAAAACGCGGCAAATTTTGAGCAGCATGCGCAGCACC
CGGAGTGCCTCTGCTCTAGGACTCCAGAGTCCTTTCGCAGCTCAGTTGAA
GGGCGCGATTGGACAACACGGAGTAAAGCGTGGGGGGGGGCTAGCCAACG
CGCTTCAGGCGAAGCTTGGGCTATCGTAAGTCTTTACGTCCAAAAAACGC
GGCAAATTTTGAGCAGCATGCGCAGCACCCGGAGTGCCTCTGCTCTAGGA
CTCCAGAGTCCTTTCGCAGCTCAGTTGAAGGGCGCGATTGGACAACACGG
AGTAAAGCGTGGGGGGGGGCTAGCCAACGCGCTTCAGGCGAAGCTTGGGC
TATCGTAA
back to top