mRNA_H-elongata_contig116211.1278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116211.1278.1
Unique NamemRNA_H-elongata_contig116211.1278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: D8LNC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC3_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.140e-75
Identity = 126/197 (63.96%), Postives = 142/197 (72.08%), Query Frame = 1 
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNS-SVYHRAMGLSVPAAFFLLCTYEPHVWLRDSVNVFTVAGLIVIMIGIKIYNTPDEPPEDRRATFQPPTAPPVKNGG 588
            CLPAAVSTVYK + LE     +D HQLSL VTAFEVVFI L  P AY+LQFLG+H DGN    QAL+DGWRCL+LM DV D D  PVDAECW GLPLV  YVV+TLLVN LV KV D + S SVYHRAM  SVP AF  LC Y    WL DS NVFTV+GLIVIMIG+++Y++  EP ED R +F PP+ P  K  G
Sbjct:  180 CLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQFLGRHGDGNTHVGQALRDGWRCLVLMRDVVDIDGYPVDAECWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVALCFYNEAEWLHDSFNVFTVSGLIVIMIGLRLYHSVPEP-EDPRDSFDPPSPPDGKRYG 375
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BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A6H5KEW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW3_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.380e-54
Identity = 95/144 (65.97%), Postives = 105/144 (72.92%), Query Frame = 1 
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNS-SVYHRAMGLSVPAAFFLLCTYE 429
            CLPAAVSTVYK + LE     +D HQLSL VTAFEVVFI L  P AY+LQ LG+H DGN    QAL+DGWRCL+LM DV D D  PVDA+CW GLPLV  YVV+TLLVN LV KV D + S SVYHRAM  SVP AF +LC Y 
Sbjct:  213 CLPAAVSTVYKQYALEQHGRPVDAHQLSLGVTAFEVVFIALAAPAAYQLQSLGRHGDGNTHVGQALKDGWRCLVLMRDVVDIDGYPVDADCWAGLPLVFSYVVATLLVNTLVQKVVDQAESASVYHRAMAFSVPTAFVVLCFYN 356
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BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A7S4ML51_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ML51_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-11
Identity = 47/180 (26.11%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDG-----NADAMQALQDGWRCLL-LMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE---PHVWLRDSVNVFTVAGLIVIMIGIKIYN 513
            C+PAAVS +YK HTL      +D++QL+  ++AF+ +F  +V+P+ Y LQ +G   D      ++       DG RC   ++ D    D  P  A C     +V+++V+S ++V   V K+     +   HR + + +  A   +  YE     +      + +  A  I++++G ++++
Sbjct:  101 CIPAAVSQLYKEHTLAHFRQPVDSNQLNFLLSAFQFMFAAVVSPLVYALQGIGFRGDWLSVYPSSRISANFYDGARCFGGMLDDGRAADGYPEPAYCQCLWWIVLMHVLSIMVVGFAVDKIVHAGAAKFMHRGISIGIVLAVIAMYVYEITDDKIEYGPIAHTWNFACAIILVVGSEVFH 280
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BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: A0A7S4IGI8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGI8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.170e-11
Identity = 47/180 (26.11%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:    1 CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGKHLDG-----NADAMQALQDGWRCLL-LMTDVEDDDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE---PHVWLRDSVNVFTVAGLIVIMIGIKIYN 513
            C+PAAVS +YK HTL      +D++QL+  ++AF+ +F  +V+P+ Y LQ +G   D      ++       DG RC   ++ D    D  P  A C     +V+++V+S ++V   V K+     +   HR + + +  A   +  YE     +      + +  A  I++++G ++++
Sbjct:  499 CIPAAVSQLYKEHTLAHFRQPVDSNQLNFLLSAFQFMFAAVVSPLVYALQGIGFRGDWLSVYPSSRISANFYDGARCFGGMLDDGRAADGYPEPAYCQCLWWIVLMHVLSIMVVGFAVDKIVHAGAAKFMHRGISIGIVLAVIAMYVYEITDDKIEYGPIAHTWNFACAIILVVGSEVFH 678
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BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Match: K0R956_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R956_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 8.190e-7
Identity = 45/179 (25.14%), Postives = 84/179 (46.93%), Query Frame = 1 
Query:    4 LPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQFLGK-----HLDGNADAMQALQDGWRCLLLMTDVED-DDRNPVDAECWGGLPLVILYVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYE-PHVWLRDS--VNVFTVAGLIVIMIGIKIYN 513
            +PAAVS +YK HTL      +D   L+L ++ F+++F  +V+P+AY LQ +G       L  +         G RC   + D     +  P  A C   L LV  + +S ++V     K+A  + + V +R +   +  +   +  Y+    W      V++F +    ++++G ++Y+
Sbjct:  277 IPAAVSQLYKEHTLTQLRQPVDRDTLNLVLSIFQLLFAIIVSPLAYGLQGMGAGDNWTSLYPSKSIGDNFHHGLRCFAGILDESTMKEGYPEPATCRWSLLLVFGHALSIVMVGISCDKLA--AATKVMYRGVSFGIICSVIFMFVYQISDKWCEYGPLVSLFHLTSTALLIVGAEVYH 453
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116211.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LNC3_ECTSI2.140e-7563.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEW3_9PHAE3.380e-5465.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4ML51_9STRA1.020e-1126.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4IGI8_9STRA2.170e-1126.11Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0R956_THAOC8.190e-725.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116211contigH-elongata_contig116211:43..1897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue2.5e-61
Seed eggNOG ortholog2880.D8LNC3
EggNOG free text desc.CRT-like, chloroquine-resistance transporter-like
EggNOG OGs28N84@1,2QUTE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004390.1
Exons5
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116211.1278.1prot_H-elongata_contig116211.1278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116211 43..1897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.366704-CDS-H-elongata_contig116211:42..1921622929675.366704-CDS-H-elongata_contig116211:42..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 43..192 +
1691679115.214621-CDS-H-elongata_contig116211:42..1921691679115.214621-CDS-H-elongata_contig116211:42..192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 43..192 +
1622929675.3907042-CDS-H-elongata_contig116211:442..5431622929675.3907042-CDS-H-elongata_contig116211:442..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 443..543 +
1691679115.2263088-CDS-H-elongata_contig116211:442..5431691679115.2263088-CDS-H-elongata_contig116211:442..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 443..543 +
1622929675.41942-CDS-H-elongata_contig116211:714..8221622929675.41942-CDS-H-elongata_contig116211:714..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 715..822 +
1691679115.242259-CDS-H-elongata_contig116211:714..8221691679115.242259-CDS-H-elongata_contig116211:714..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 715..822 +
1622929675.4374702-CDS-H-elongata_contig116211:1213..12891622929675.4374702-CDS-H-elongata_contig116211:1213..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 1214..1289 +
1691679115.2518194-CDS-H-elongata_contig116211:1213..12891691679115.2518194-CDS-H-elongata_contig116211:1213..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 1214..1289 +
1622929675.4617128-CDS-H-elongata_contig116211:1741..18971622929675.4617128-CDS-H-elongata_contig116211:1741..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 1742..1897 +
1691679115.2654192-CDS-H-elongata_contig116211:1741..18971691679115.2654192-CDS-H-elongata_contig116211:1741..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116211 1742..1897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116211.1278.1

>prot_H-elongata_contig116211.1278.1 ID=prot_H-elongata_contig116211.1278.1|Name=mRNA_H-elongata_contig116211.1278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
CLPAAVSTVYKMHTLEMCALNIDTHQLSLSVTAFEVVFITLVTPIAYRLQ
FLGKHLDGNADAMQALQDGWRCLLLMTDVEDDDRNPVDAECWGGLPLVIL
YVVSTLLVNALVHKVADVSNSSVYHRAMGLSVPAAFFLLCTYEPHVWLRD
SVNVFTVAGLIVIMIGIKIYNTPDEPPEDRRATFQPPTAPPVKNGG*
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mRNA from alignment at H-elongata_contig116211:43..1897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116211.1278.1 ID=mRNA_H-elongata_contig116211.1278.1|Name=mRNA_H-elongata_contig116211.1278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1855bp|location=Sequence derived from alignment at H-elongata_contig116211:43..1897+ (Himanthalia elongata Himel1 dioecious)
TGTTTGCCGGCGGCTGTCTCCACCGTGTACAAAATGCACACGCTGGAGAT
GTGCGCCCTGAACATCGACACCCACCAGCTAAGCCTCTCGGTGACCGCTT
TCGAGGTGGTTTTCATCACTCTTGTGACCCCCATTGCGTACAGGTTACAG
GTGAGACGCGGCGTCGTCCGCGCAGGCGTCTATCTGGGTGTTTTTTTTTG
TATCTGTATATGGTTACTCTGTATTTGTTACGTGGCTTCCGAACACACAT
ACACATGCCCCGACGACTTTCCTGGGAAGCTGCAGGGCGATTTCACGCGC
ATTTCTGAGGTGCAGCTGGAATCTCCACACATCCCTTTCTCCGCCGTGTT
ATGGTCCCTACTACTGCTTGACCTTGGTACCGCGTTGATGGGATCAAAAG
TTCTTGGGAAAGCACCTCGATGGGAACGCGGACGCCATGCAGGCGTTACA
GGACGGGTGGCGGTGCCTTCTTTTGATGACTGACGTCGAAGATGACGACA
GGTGAGTGTCGATCTAGTCTGGTCTGGTCCTTTTTTGTTTAAGGTTCCGG
GAGGATAAATCTTCGTGATCGCACCCAACAGACGGTACCGGAAGATCCAA
TACGATAAAACATGCCTATAGCAGTGGCGCAGATTTCCCCGTCCTCTTTG
TGCCTCGATCAACCCGCCCCAGGAACCCAGTTGACGCGGAGTGCTGGGGG
GGGCTACCTCTGGTTATTCTATATGTGGTGTCAACTCTGCTCGTCAATGC
TCTAGTACATAAGGTCGCGGACGTTTCCAAGTAAGTGCTTCGGACGAGCT
GGTCGAACTCGCGTAGTCTCTGCATCCACGTGGGGGTGTCTGGAAGGCGC
CACTAATATAGACATGTTTCTTGTGAGCACTCCGTTGCTCAGGTTAATTT
TCTTCATCGTCTCGGCCGCTCGGCAATATTTTAATCTATAGAAACACACT
GTAACGATGCGTCGATACGCATATGATGGCGCTCCTGATACAGCGATGCG
TGTGCCGCATGGCAACCGCGCGTTGGGATACACTGACCGCCACATTCCCT
CTCTATCGACACCGTGTGTGTGCTATGTGTGTGTGTGTGTGTGTGTGTGT
GTGTACTGCCCCGTATATTTGCGCGCTCGTTCCGTGACCTTCTCTCGCGT
GTCCGCGCGTGTTCTCAACAGTTCTTCAGTGTACCACCGCGCCATGGGTC
TCTCCGTACCGGCAGCGTTCTTCCTTTTGTGCACTTACGAACCACACGTG
CGTGCTAGGAAGGAATTTGATTTCGCTTGGCTGGGTTTTACCGCCGTTGG
CGTTAGGTCTCGATGCAATAGCGCGATGTGCGAAAGCTGTCTGTGATTCG
ATGCAATAGCGCACGGCTGTGGCGAAAGCTTATTTTTCCGACTGGCTTAT
TGATAGCTTCTGTTGGAAGGTGGATCGTGGCGATCGCGCGTGATATTTTC
TCGTCGCATCTTCTCGTGCAATCGCTCTTTGGTATCGCCAACCAGGGAAT
GGGGATGGGGATGGGGATGGGGATGGGGATGGGGAAGGTGAACCCGTGTG
CGCTTATCTCGATTTGCGGGATTAATCTCCCCGGGACTGTGTACCCCTTC
ATGCCTCCTTGCCGTTTTTTTTCTTCTTCTTTTGATCCCTGTTTCTTCCA
TGTATGTATGTATGTATATATATATATATATATATATATCCGCGCGTAGG
TTTGGCTCCGCGACAGCGTAAACGTTTTCACCGTGGCGGGGCTGATCGTT
ATCATGATCGGCATCAAGATTTACAACACCCCCGACGAGCCACCGGAAGA
TAGGCGAGCCACCTTCCAGCCGCCGACTGCGCCACCCGTCAAGAATGGCG
GTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig116211:43..1897+

>mRNA_H-elongata_contig116211.1278.1 ID=mRNA_H-elongata_contig116211.1278.1|Name=mRNA_H-elongata_contig116211.1278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig116211:43..1897+ (Himanthalia elongata Himel1 dioecious)
TGTTTGCCGGCGGCTGTCTCCACCGTGTACAAAATGCACACGCTGGAGAT
GTGCGCCCTGAACATCGACACCCACCAGCTAAGCCTCTCGGTGACCGCTT
TCGAGGTGGTTTTCATCACTCTTGTGACCCCCATTGCGTACAGGTTACAG
TGTTTGCCGGCGGCTGTCTCCACCGTGTACAAAATGCACACGCTGGAGAT
GTGCGCCCTGAACATCGACACCCACCAGCTAAGCCTCTCGGTGACCGCTT
TCGAGGTGGTTTTCATCACTCTTGTGACCCCCATTGCGTACAGGTTACAG
TTCTTGGGAAAGCACCTCGATGGGAACGCGGACGCCATGCAGGCGTTACA
GGACGGGTGGCGGTGCCTTCTTTTGATGACTGACGTCGAAGATGACGACA
GTTCTTGGGAAAGCACCTCGATGGGAACGCGGACGCCATGCAGGCGTTAC
AGGACGGGTGGCGGTGCCTTCTTTTGATGACTGACGTCGAAGATGACGAC
AGGAACCCAGTTGACGCGGAGTGCTGGGGGGGGCTACCTCTGGTTATTCT
ATATGTGGTGTCAACTCTGCTCGTCAATGCTCTAGTACATAAGGTCGCGG
ACGTTTCCAAGAACCCAGTTGACGCGGAGTGCTGGGGGGGGCTACCTCTG
GTTATTCTATATGTGGTGTCAACTCTGCTCGTCAATGCTCTAGTACATAA
GGTCGCGGACGTTTCCAATTCTTCAGTGTACCACCGCGCCATGGGTCTCT
CCGTACCGGCAGCGTTCTTCCTTTTGTGCACTTACGAACCACACTTCTTC
AGTGTACCACCGCGCCATGGGTCTCTCCGTACCGGCAGCGTTCTTCCTTT
TGTGCACTTACGAACCACACGTTTGGCTCCGCGACAGCGTAAACGTTTTC
ACCGTGGCGGGGCTGATCGTTATCATGATCGGCATCAAGATTTACAACAC
CCCCGACGAGCCACCGGAAGATAGGCGAGCCACCTTCCAGCCGCCGACTG
CGCCACCCGTCAAGAATGGCGGTTGAGTTTGGCTCCGCGACAGCGTAAAC
GTTTTCACCGTGGCGGGGCTGATCGTTATCATGATCGGCATCAAGATTTA
CAACACCCCCGACGAGCCACCGGAAGATAGGCGAGCCACCTTCCAGCCGC
CGACTGCGCCACCCGTCAAGAATGGCGGTTGA
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