mRNA_H-elongata_contig54103.12780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54103.12780.1
Unique NamemRNA_H-elongata_contig54103.12780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54103.12780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54103contigH-elongata_contig54103:833..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size349
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.626821-UTR-H-elongata_contig54103:832..8571622930881.626821-UTR-H-elongata_contig54103:832..857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54103 833..857 +
1691679609.778226-UTR-H-elongata_contig54103:832..8571691679609.778226-UTR-H-elongata_contig54103:832..857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54103 833..857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.6405122-CDS-H-elongata_contig54103:857..11811622930881.6405122-CDS-H-elongata_contig54103:857..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54103 858..1181 +
1691679609.7886093-CDS-H-elongata_contig54103:857..11811691679609.7886093-CDS-H-elongata_contig54103:857..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54103 858..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54103.12780.1prot_H-elongata_contig54103.12780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54103 858..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54103.12780.1

>prot_H-elongata_contig54103.12780.1 ID=prot_H-elongata_contig54103.12780.1|Name=mRNA_H-elongata_contig54103.12780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MVTISDASSVGRREYRVGMEYSIIESCPFGRDHASLERNILAVEDRAVPS
YGRLLSAFYHHHFTFHAPFPAFGSPSGALFLVLLYLVSFCLRSTFKPGTG
SFSTGTM*
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mRNA from alignment at H-elongata_contig54103:833..1181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54103.12780.1 ID=mRNA_H-elongata_contig54103.12780.1|Name=mRNA_H-elongata_contig54103.12780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=349bp|location=Sequence derived from alignment at H-elongata_contig54103:833..1181+ (Himanthalia elongata Himel1 dioecious)
CGACGCACTGAACACGAGCGTAGTCATGGTAACAATTTCCGACGCTTCCT
CGGTAGGACGAAGAGAGTATAGGGTAGGGATGGAGTACAGTATCATCGAG
TCGTGCCCTTTTGGCAGAGATCACGCGTCTCTGGAGAGAAACATCCTGGC
GGTTGAAGATCGAGCTGTACCGTCCTATGGTCGCTTATTATCTGCTTTCT
ATCACCATCATTTCACATTCCATGCGCCTTTTCCAGCATTTGGGAGCCCT
AGCGGTGCTTTATTTTTAGTATTACTTTACTTGGTATCGTTTTGTCTTCG
ATCGACTTTCAAACCAGGTACGGGATCGTTTTCAACGGGAACTATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig54103:833..1181+

>mRNA_H-elongata_contig54103.12780.1 ID=mRNA_H-elongata_contig54103.12780.1|Name=mRNA_H-elongata_contig54103.12780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig54103:833..1181+ (Himanthalia elongata Himel1 dioecious)
ATGGTAACAATTTCCGACGCTTCCTCGGTAGGACGAAGAGAGTATAGGGT
AGGGATGGAGTACAGTATCATCGAGTCGTGCCCTTTTGGCAGAGATCACG
CGTCTCTGGAGAGAAACATCCTGGCGGTTGAAGATCGAGCTGTACCGTCC
TATGGTCGCTTATTATCTGCTTTCTATCACCATCATTTCACATTCCATGC
GCCTTTTCCAGCATTTGGGAGCCCTAGCGGTGCTTTATTTTTAGTATTAC
TTTACTTGGTATCGTTTTGTCTTCGATCGACTTTCAAACCAGGTACGGGA
TCGTTTTCAACGGGAACTATGTAAATGGTAACAATTTCCGACGCTTCCTC
GGTAGGACGAAGAGAGTATAGGGTAGGGATGGAGTACAGTATCATCGAGT
CGTGCCCTTTTGGCAGAGATCACGCGTCTCTGGAGAGAAACATCCTGGCG
GTTGAAGATCGAGCTGTACCGTCCTATGGTCGCTTATTATCTGCTTTCTA
TCACCATCATTTCACATTCCATGCGCCTTTTCCAGCATTTGGGAGCCCTA
GCGGTGCTTTATTTTTAGTATTACTTTACTTGGTATCGTTTTGTCTTCGA
TCGACTTTCAAACCAGGTACGGGATCGTTTTCAACGGGAACTATGTAA
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