prot_H-elongata_contig54075.12777.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54075.12777.1
Unique Nameprot_H-elongata_contig54075.12777.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length616
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54075.12777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 230..258
e-value: 9.5E-4
score: 19.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 387..447
e-value: 2.8E-12
score: 46.5
coord: 318..377
e-value: 1.2E-9
score: 38.1
coord: 526..584
e-value: 3.6E-6
score: 27.0
coord: 456..517
e-value: 2.3E-9
score: 37.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 261..308
e-value: 1.0E-10
score: 41.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 264..297
e-value: 7.8E-8
score: 30.0
coord: 229..263
e-value: 5.6E-7
score: 27.3
coord: 541..574
e-value: 0.001
score: 17.1
coord: 436..470
e-value: 1.3E-5
score: 23.0
coord: 366..400
e-value: 6.3E-8
score: 30.3
coord: 401..435
e-value: 5.8E-4
score: 17.9
coord: 307..332
e-value: 1.1E-4
score: 20.1
coord: 471..505
e-value: 5.6E-5
score: 21.0
coord: 333..365
e-value: 3.4E-4
score: 18.6
coord: 507..539
e-value: 3.1E-5
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 469..503
score: 10.676
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 539..573
score: 9.076
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 504..538
score: 11.586
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 192..226
score: 6.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 297..330
score: 8.046
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..296
score: 13.11
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 434..468
score: 10.611
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 364..398
score: 12.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..433
score: 10.764
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 227..261
score: 11.805
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 157..191
score: 8.111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..363
score: 7.815
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 309..445
e-value: 8.7E-44
score: 152.1
coord: 446..597
e-value: 1.0E-37
score: 132.1
coord: 158..308
e-value: 6.6E-40
score: 139.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 267..414
coord: 117..282
coord: 487..584
coord: 379..484

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54075contigH-elongata_contig54075:1061..3458 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54075.12777.1mRNA_H-elongata_contig54075.12777.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54075 922..3918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54075.12777.1 ID=prot_H-elongata_contig54075.12777.1|Name=mRNA_H-elongata_contig54075.12777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=616bp
MIGTYAPSTISGGERVPLFTPSFGLAPLFPAPRRVSGTAYQMPSRLQSRG
AHILWASTTGDDRLSAASAARARVLQQQTAIADRRARQSKEQQRKQQKAG
NIRHRSSLGNELKDVLYFQSRDFGDRIKRMRTNDWEGVLRELKHAERALE
LRGFRVTMRIYATSIRHLAKCRRWKEAVGILDGIRAAGRSPNSNCLSAAI
DACRYARQWERAVSLLRQERKNGTGVDAFCYSSAIAACANAGQWELAVAL
LREMEATGIPPNVVTFNSSIKACGNAGRWREAVSLLREMESLGIKPSAIS
FNSAIAACHGGHWEEAVSLLREMVVKGYVPDVVTYNSAITACGGRWEEAV
SLLGEMEVEGITPDVISYSAAIKACGKGNQPEEAVALLREMVAQGIRPNI
VAFNSAITAVGEAGQWKNSMSLLREMEAEGITPDVISYSAAITACGNGAQ
PSKAVSLLKEMDARGISPNVISYSAAITACGNGGWPIEAVSLLREMAAKG
VSPNELTFNSAITAVGDTGRWMEAMSLFREMEAAGIAPSLISFNSAIESC
AIGGQSELAVSLLEEMASKGIARDIVSYQSAIKAHDLCIASAPLRLQRGC
LEAIAEPLQRTSFQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf