mRNA_H-elongata_contig54054.12775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54054.12775.1
Unique NamemRNA_H-elongata_contig54054.12775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54054.12775.1 vs. uniprot
Match: A0A6H5JF99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF99_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.200e-48
Identity = 102/195 (52.31%), Postives = 122/195 (62.56%), Query Frame = 1 
Query:    1 DGGTFHVKNGSSLAFMLP--VTFEDNLVEAGHSGGAVYAGGKVDFEYKATFLRNEAMSDADVDAGNGGAVAVGRQGSVTFHDFSSFSGNAVNSGGKGGAIANLGNLNFKRASYFYSNVAKGETADNGDELGGLGGAIYTEGGATTYFKRRTIMRSNEASNGGALYNAGTTELASRGFFRGNQAMGKHAADGGHIF 579
            DGG  +V++GSS  F +P  V FE N VEAG+SGG VYA            + NEA S  D  AG GGAVAVG +GS+ F     F+ N   SGG GGAIAN G+L F+R SYF+ N A  +   NGD  GG GGAIY   G+TT F RRTI   +EA++GGALYN G   L S GF RGN+AMG   A+GGHI+
Sbjct:  129 DGGAIYVESGSSATFDVPSKVNFEGNTVEAGYSGGVVYAXXXXXXXXXXXXISNEARSSGDEPAGYGGAVAVGPEGSLEFQGALEFTDNKAQSGGSGGAIANFGSLVFRRKSYFWFNTAAEDA--NGD--GGFGGAIYAGYGSTTEFFRRTIWFYSEAASGGALYNLGEVMLYSNGFIRGNKAMGSVKAEGGHIY 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54054.12775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JF99_9PHAE4.200e-4852.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54054contigH-elongata_contig54054:229..1626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002470.1
Exons4
Model size579
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54054.12775.1prot_H-elongata_contig54054.12775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54054 229..1626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.6503363-CDS-H-elongata_contig54054:228..3481622930880.6503363-CDS-H-elongata_contig54054:228..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 229..348 +
1691679609.3035145-CDS-H-elongata_contig54054:228..3481691679609.3035145-CDS-H-elongata_contig54054:228..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 229..348 +
1622930880.6708574-CDS-H-elongata_contig54054:770..10191622930880.6708574-CDS-H-elongata_contig54054:770..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 771..1019 +
1691679609.3138158-CDS-H-elongata_contig54054:770..10191691679609.3138158-CDS-H-elongata_contig54054:770..1019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 771..1019 +
1622930880.6861672-CDS-H-elongata_contig54054:1158..13351622930880.6861672-CDS-H-elongata_contig54054:1158..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 1159..1335 +
1691679609.3240602-CDS-H-elongata_contig54054:1158..13351691679609.3240602-CDS-H-elongata_contig54054:1158..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 1159..1335 +
1622930880.7007263-CDS-H-elongata_contig54054:1593..16261622930880.7007263-CDS-H-elongata_contig54054:1593..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 1594..1626 +
1691679609.334556-CDS-H-elongata_contig54054:1593..16261691679609.334556-CDS-H-elongata_contig54054:1593..1626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54054 1594..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54054.12775.1

>prot_H-elongata_contig54054.12775.1 ID=prot_H-elongata_contig54054.12775.1|Name=mRNA_H-elongata_contig54054.12775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
DGGTFHVKNGSSLAFMLPVTFEDNLVEAGHSGGAVYAGGKVDFEYKATFL
RNEAMSDADVDAGNGGAVAVGRQGSVTFHDFSSFSGNAVNSGGKGGAIAN
LGNLNFKRASYFYSNVAKGETADNGDELGGLGGAIYTEGGATTYFKRRTI
MRSNEASNGGALYNAGTTELASRGFFRGNQAMGKHAADGGHIF
back to top

mRNA from alignment at H-elongata_contig54054:229..1626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54054.12775.1 ID=mRNA_H-elongata_contig54054.12775.1|Name=mRNA_H-elongata_contig54054.12775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig54054:229..1626+ (Himanthalia elongata Himel1 dioecious)
GACGGTGGAACATTCCACGTGAAGAACGGATCTTCTTTGGCGTTCATGCT
GCCCGTTACATTCGAAGACAACTTGGTCGAGGCAGGCCACTCGGGTGGAG
CGGTGTATGCCGGTGGTAAGGTACGACTATATCGCCGTAACATATCCGTG
TATTGATTTACACAGGAAAACCCCTAGGTCAAGTAAACGCACCCCGATTA
GTAGCAAAAAGGTATCGTCAGCGACAGGCCGCACCGGTGCGTTTGCAAAA
GGGCGAGGTTACGATCGTAGAAAAGAAGTCGGTAGCTGTGGCTGGGAGAA
GATTTGTTAGGTTTCTTTTACGGGTATAATGAGCGTGGTACTGATGTCTA
AGAGGTAGAGGAGCTGGCAGGGCTACAGTATAAAAGTCAAAAGGGTCTCC
CAGTTTCTATAGCAGATCTCGAACCTATTATTCCCACCCGTGCGCAGCGG
CGCGTTTAGTAGGGGCTTGTGGCAGTAAGCAATGAGTAAGTGGAGGTGTG
TTGTTGCCAGCTTACCTTTGGCATCATGGTTTGACATCACAGGTTGACTT
CGAGTACAAAGCTACTTTTCTGCGCAATGAGGCGATGAGCGACGCGGATG
TCGACGCCGGCAACGGTGGCGCAGTTGCCGTAGGGCGACAAGGTTCCGTC
ACGTTTCACGACTTTTCATCCTTTTCGGGGAATGCCGTCAACAGTGGGGG
GAAGGGTGGCGCTATTGCAAACCTCGGCAACCTGAACTTCAAGAGGGCGA
GTTACTTCTACTCCAACGTGGCTAAGGGTGAGACCGCAGATGTCGACATA
TTCTCTGTTCTATTTCAACAATATGCGTGATACGAGGAGATTATTTGTCC
ACCTCATTTTGATCTCTCGATGTAATCAATCTAACCACTTTCAGTTTGCT
GCCATATCTTGCTGCTTCTCCGGAGAAGAGAACGGCGATGAGCTGGGCGG
CCTCGGTGGGGCGATTTACACCGAAGGAGGGGCCACAACCTACTTTAAAC
GCCGAACCATCATGCGTTCGAACGAGGCTAGCAACGGAGGGGCGTTGTAC
AACGCTGGTACCACCGAGCTCGCAAGTCGTGGATTTTTCCGTGGGAACCA
GGCCATGGTAAGACCACCCCTCCCCGCGATTACTTATACCAACCCCATAG
AAACCATTTCGTCATTTTGATATTTGCTTAGCAGTCGTTTTGATCGTGTG
TTAAGAGAGTTAGGGTCTTCCCTCGATTCTCGATGCGTAAACATGTAGAT
ACAAACCGCTGCACGGCTCTGACCCCAAGCTCGCCCTCACTCTGCTTTCT
CCTAACTCCAGCTCCATACCCTTCCCCCGTTTCCTGGACAAAAAATAATA
CTATATAATGTCAAGGGCAAACATGCGGCGGATGGCGGCCACATCTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54054:229..1626+

>mRNA_H-elongata_contig54054.12775.1 ID=mRNA_H-elongata_contig54054.12775.1|Name=mRNA_H-elongata_contig54054.12775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig54054:229..1626+ (Himanthalia elongata Himel1 dioecious)
GACGGTGGAACATTCCACGTGAAGAACGGATCTTCTTTGGCGTTCATGCT
GCCCGTTACATTCGAAGACAACTTGGTCGAGGCAGGCCACTCGGGTGGAG
CGGTGTATGCCGGTGGTAAGGACGGTGGAACATTCCACGTGAAGAACGGA
TCTTCTTTGGCGTTCATGCTGCCCGTTACATTCGAAGACAACTTGGTCGA
GGCAGGCCACTCGGGTGGAGCGGTGTATGCCGGTGGTAAGGTTGACTTCG
AGTACAAAGCTACTTTTCTGCGCAATGAGGCGATGAGCGACGCGGATGTC
GACGCCGGCAACGGTGGCGCAGTTGCCGTAGGGCGACAAGGTTCCGTCAC
GTTTCACGACTTTTCATCCTTTTCGGGGAATGCCGTCAACAGTGGGGGGA
AGGGTGGCGCTATTGCAAACCTCGGCAACCTGAACTTCAAGAGGGCGAGT
TACTTCTACTCCAACGTGGCTAAGGGTGAGACCGCAGATGTTGACTTCGA
GTACAAAGCTACTTTTCTGCGCAATGAGGCGATGAGCGACGCGGATGTCG
ACGCCGGCAACGGTGGCGCAGTTGCCGTAGGGCGACAAGGTTCCGTCACG
TTTCACGACTTTTCATCCTTTTCGGGGAATGCCGTCAACAGTGGGGGGAA
GGGTGGCGCTATTGCAAACCTCGGCAACCTGAACTTCAAGAGGGCGAGTT
ACTTCTACTCCAACGTGGCTAAGGGTGAGACCGCAGATAACGGCGATGAG
CTGGGCGGCCTCGGTGGGGCGATTTACACCGAAGGAGGGGCCACAACCTA
CTTTAAACGCCGAACCATCATGCGTTCGAACGAGGCTAGCAACGGAGGGG
CGTTGTACAACGCTGGTACCACCGAGCTCGCAAGTCGTGGATTTTTCCGT
GGGAACCAGGCCATGAACGGCGATGAGCTGGGCGGCCTCGGTGGGGCGAT
TTACACCGAAGGAGGGGCCACAACCTACTTTAAACGCCGAACCATCATGC
GTTCGAACGAGGCTAGCAACGGAGGGGCGTTGTACAACGCTGGTACCACC
GAGCTCGCAAGTCGTGGATTTTTCCGTGGGAACCAGGCCATGGGCAAACA
TGCGGCGGATGGCGGCCACATCTTTGGCAAACATGCGGCGGATGGCGGCC
ACATCTTT
back to top