mRNA_H-elongata_contig54035.12772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54035.12772.1
Unique NamemRNA_H-elongata_contig54035.12772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: D7FS56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS56_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.620e-13
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   31 DVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            DVT+LCR AA  LGP+EMIHD +FSLYGAMSALELMD KMD
Sbjct:   29 DVTQLCRTAASMLGPDEMIHDADFSLYGAMSALELMDTKMD 69
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: R7QE66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE66_CHOCR)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-7
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   31 DVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            DVT   REA   + P EMIH P FSL+ AMSA+ELMD KMD
Sbjct:   41 DVTATFREARDKMEPGEMIHHPSFSLHAAMSAIELMDPKMD 81
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: A0A1D2MQ79_ORCCI (Protein MAK10 homolog n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MQ79_ORCCI)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   13 KKYEEVDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            K+ E VD+T+   +A K+L   E++HDP F L+ AMSA+E+MD KMD
Sbjct:    4 KETETVDITQPFLDAVKSLTLGELLHDPSFGLFEAMSAIEMMDPKMD 50
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: UPI000EF44B25 (N-alpha-acetyltransferase 35, NatC auxiliary subunit-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000EF44B25)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   19 YEEVDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            Y+ VDVT+   EA + L   E++H+P F LY AMSA+E+MD KMD
Sbjct:   47 YKWVDVTQPFSEACEGLKLGELVHEPNFGLYEAMSAIEMMDPKMD 91
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: A0A1X7UJ15_AMPQE (Protein MAK10 homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UJ15_AMPQE)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   34 VTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            +T++ + +A  L P E+IH+P FSLY AMSA+EL D KMD
Sbjct:   87 ITEIFQNSASVLSPGELIHEPSFSLYDAMSAIELTDPKMD 126
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: A0A2G5CLU3_AQUCA (Uncharacterized protein (Fragment) n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CLU3_AQUCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.220e-6
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   31 DVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            DVT L + A K LG  E+IH   FSL+ AMSALE+MD KMD
Sbjct:   27 DVTPLLQAACKDLGDGELIHGENFSLFAAMSALEIMDPKMD 67
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: A0A7R9BJE8_9CRUS (Protein MAK10 homolog n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BJE8_9CRUS)

HSP 1 Score: 51.2 bits (121), Expect = 4.180e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   19 YEEVDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            Y+  D+TK   E+AK L   E+IHD  F L+ AMSA+E+MD KMD
Sbjct:   19 YDWTDITKDFWESAKELSLGELIHDENFGLFEAMSAIEMMDPKMD 63
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: UPI001455D554 (N-alpha-acetyltransferase 35, NatC auxiliary subunit-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D554)

HSP 1 Score: 51.2 bits (121), Expect = 4.180e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   16 KYEEVDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            KY  VD+T+   EAA  L   E++HD  F L+ AMSA+E+MD KMD
Sbjct:   53 KYNWVDITEEFTEAASQLEMGELLHDANFGLFEAMSAIEMMDPKMD 98
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: W7U6I3_9STRA (Mak10 subunit, NatC N(Alpha)-terminal acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6I3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.180e-6
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   31 DVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            D+T  CR AA +L   EMI  P FSL+ AMSALELMD KMD
Sbjct:   24 DITSDCRLAAASLDTGEMICSPAFSLFEAMSALELMDPKMD 64
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BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Match: F7AER5_CIOIN (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F7AER5_CIOIN)

HSP 1 Score: 50.4 bits (119), Expect = 7.820e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   28 VDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKMD 153
            VDVT+   EA + L   E++H+P F LY AMSA+E+MD KMD
Sbjct:    2 VDVTQPFSEACEGLKLGELVHEPNFGLYEAMSAIEMMDPKMD 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54035.12772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS56_ECTSI3.620e-1380.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R7QE66_CHOCR3.410e-763.41Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1D2MQ79_ORCCI1.190e-651.06Protein MAK10 homolog n=1 Tax=Orchesella cincta Ta... [more]
UPI000EF44B251.190e-653.33N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
A0A1X7UJ15_AMPQE1.630e-655.00Protein MAK10 homolog n=1 Tax=Amphimedon queenslan... [more]
A0A2G5CLU3_AQUCA2.220e-660.98Uncharacterized protein (Fragment) n=3 Tax=Thalict... [more]
A0A7R9BJE8_9CRUS4.180e-653.33Protein MAK10 homolog n=1 Tax=Notodromas monacha T... [more]
UPI001455D5544.180e-652.17N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
W7U6I3_9STRA4.180e-663.41Mak10 subunit, NatC N(Alpha)-terminal acetyltransf... [more]
F7AER5_CIOIN7.820e-654.76N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54035contigH-elongata_contig54035:3099..3251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D7FS56
Preferred nameMAK10
KEGG koko:K20823
GOsGO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006914,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010467,GO:0016236,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0031248,GO:0031365,GO:0031414,GO:0031417,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0061919,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234
EggNOG free text desc.smooth muscle cell proliferation
EggNOG OGsKOG2343@1,KOG2343@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.348715-CDS-H-elongata_contig54035:3098..32511622930880.348715-CDS-H-elongata_contig54035:3098..3251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 3099..3251 -
1691679609.1961036-CDS-H-elongata_contig54035:3098..32511691679609.1961036-CDS-H-elongata_contig54035:3098..3251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 3099..3251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54035.12772.1prot_H-elongata_contig54035.12772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54035 3099..3251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54035.12772.1

>prot_H-elongata_contig54035.12772.1 ID=prot_H-elongata_contig54035.12772.1|Name=mRNA_H-elongata_contig54035.12772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MGVNKKYEEVDVTKLCREAAKALGPNEMIHDPEFSLYGAMSALELMDAKM
D
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mRNA from alignment at H-elongata_contig54035:3099..3251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54035.12772.1 ID=mRNA_H-elongata_contig54035.12772.1|Name=mRNA_H-elongata_contig54035.12772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig54035:3099..3251- (Himanthalia elongata Himel1 dioecious)
ATGGGAGTGAATAAAAAATATGAGGAAGTGGACGTCACGAAGTTGTGCAG
GGAGGCGGCGAAGGCGCTGGGACCGAACGAAATGATACACGATCCTGAGT
TCAGTCTGTACGGTGCTATGTCTGCTCTCGAGCTTATGGACGCCAAGATG
GAC
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Coding sequence (CDS) from alignment at H-elongata_contig54035:3099..3251-

>mRNA_H-elongata_contig54035.12772.1 ID=mRNA_H-elongata_contig54035.12772.1|Name=mRNA_H-elongata_contig54035.12772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig54035:3099..3251- (Himanthalia elongata Himel1 dioecious)
ATGGGAGTGAATAAAAAATATGAGGAAGTGGACGTCACGAAGTTGTGCAG
GGAGGCGGCGAAGGCGCTGGGACCGAACGAAATGATACACGATCCTGAGT
TCAGTCTGTACGGTGCTATGTCTGCTCTCGAGCTTATGGACGCCAAGATG
GACATGGGAGTGAATAAAAAATATGAGGAAGTGGACGTCACGAAGTTGTG
CAGGGAGGCGGCGAAGGCGCTGGGACCGAACGAAATGATACACGATCCTG
AGTTCAGTCTGTACGGTGCTATGTCTGCTCTCGAGCTTATGGACGCCAAG
ATGGAC
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