mRNA_H-elongata_contig54035.12771.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54035.12771.1
Unique NamemRNA_H-elongata_contig54035.12771.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: D7FS56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS56_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.960e-43
Identity = 86/148 (58.11%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   31 SQRALSVLDGMTICEVAWHEGGSLPETLFACLYFHPVVLSAI------------------------------------------ILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            SQR LSVLDGM++CEVAWHEGGSLPETL+ACLY HP V SA+                                          +LAQSLATLRCCS+ARDV+ILADI+EEEDFY STFGFRLAPPVEDESL DLL LAE A+R R++
Sbjct:  144 SQRTLSVLDGMSVCEVAWHEGGSLPETLYACLYLHPDVFSAVLRGLGWPLEQAPGSSSARTRLDLRIKEGNFPWKPVDRALTLAVLAQSLATLRCCSLARDVMILADIFEEEDFYPSTFGFRLAPPVEDESLTDLLALAEAAMRARIK 291          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: A0A836CGZ5_9STRA (Mak10 subunit, NatC N-terminal acetyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-21
Identity = 56/142 (39.44%), Postives = 71/142 (50.00%), Query Frame = 1
Query:   49 VLDGMTICEVAWHEGGSLPETLFACLYFHPVVLSAI---------------------------------------------------ILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPP--VEDESLADLLG 315
            VLDG+  CE+AWH+GGSLPETL+ CLY HP  L A+                                                   + A   A LRCC IARD+V+LADI+EEEDFY+ +FGF+L PP  + D++L  LLG
Sbjct:   78 VLDGLLTCELAWHDGGSLPETLYTCLYVHPSALEALMRVLQLDKAAPEATRENGSSSANSSTGISDVQQSATILDERHVVGKELSLALFAYVAACLRCCGIARDIVLLADIHEEEDFYTKSFGFQLVPPTGISDKALVVLLG 219          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: UPI00109BCEE9 (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BCEE9)

HSP 1 Score: 75.5 bits (184), Expect = 1.620e-14
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   52 LDGMTICEVAWHEGGSLPETLFACLYFHP--VVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVRGGAV 360
            +D +  C V W +G SL +T+F CLY H   ++    + A  +A L+CC   R  V  A ++EEEDF S T+GF++  PV +   A +L  AE  + ++++   V
Sbjct:    1 MDELLACLVTWLDGHSLVQTVFICLYMHDPFLIQDPCLKAFCVAVLKCCEFIRIAVNTAQVFEEEDFQSMTYGFKMGSPVSEPRAAGMLKEAEEEIAKKIKSARV 105          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: A0A8C4NDR6_EPTBU (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NDR6_EPTBU)

HSP 1 Score: 75.5 bits (184), Expect = 7.160e-14
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFH--PVVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            + ++D    C V W EG SL +T+F CLY H   ++  A + A +L  L+ C I RD V  A ++EEEDF+S T+GF++A  V D  +  +L   E   + RV+
Sbjct:   99 VGIIDNCFCCLVTWLEGHSLAQTVFTCLYMHNADLIEDAAMKAFTLGILKICDIVRDKVNKASVFEEEDFHSMTYGFKMANNVTDLRVTGMLKDVEEDFQRRVK 202          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: A0A6P8II77_ACTTE (Protein MAK10 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8II77_ACTTE)

HSP 1 Score: 76.3 bits (186), Expect = 9.660e-14
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   31 SQRALSVLDGMTICEVAWHEGGSLPETLFACLYFH-PVVLSAIIL-AQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVRGGAV 360
            S   L ++D +  C V W +G SL +T+F CLY H P ++  + L A  +A L+CC   R  V  A ++EEEDF S T+GF++   V +   A +L  AE  +  +++   +
Sbjct:  133 SDELLGIMDQLMACLVTWLDGHSLVQTVFICLYMHDPFLIEDLCLKAYCIAILKCCEFIRIAVNTAQVFEEEDFQSMTYGFKMGSQVSETRTAGMLKEAEEEISRKLKNARI 244          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: A0A8C4N7Z4_EPTBU (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N7Z4_EPTBU)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-13
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFH--PVVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            + ++D    C V W EG SL +T+F CLY H   ++  A + A +L  L+ C I RD V  A ++EEEDF+S T+GF++A  V D  +  +L   E   + RV+
Sbjct:   99 VGIIDNCFCCLVTWLEGHSLAQTVFTCLYMHNADLIEDAAMKAFTLGILKICDIVRDKVNKASVFEEEDFHSMTYGFKMANNVTDLRVTGMLKDVEEDFQRRVK 202          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: F6UFC8_MOUSE (N-alpha-acetyltransferase 35, NatC auxiliary subunit (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=F6UFC8_MOUSE)

HSP 1 Score: 70.5 bits (171), Expect = 6.530e-13
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFH--PVVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            + ++D    C + W EG SL +T+F CLY H    +    + A +L  L+ C IAR+ V  A ++EEEDF S T+GF++A  V D  +  +L   E  ++ RV+
Sbjct:   28 IGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDLQRRVK 131          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: UPI00138FFF81 (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=3 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FFF81)

HSP 1 Score: 73.2 bits (178), Expect = 1.160e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFHP--VVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            L V+D +  C V W +G SL +T+F CLY H   ++    + A  +A L+CC   R  +  A ++EEEDF S T+GF++   V +   A ++  AE  +  +++
Sbjct:  133 LGVMDELMACVVTWLDGHSLVQTVFICLYMHNPFIIEDPCLKAYCVAVLKCCEFIRLAINKAQVFEEEDFQSMTYGFKMGNQVSETRAAGMIKEAEEEIARKIK 236          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: S9Y4R5_CAMFR (N-alpha-acetyltransferase 35, NatC auxiliary subunit n=1 Tax=Camelus ferus TaxID=419612 RepID=S9Y4R5_CAMFR)

HSP 1 Score: 70.9 bits (172), Expect = 1.380e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFH--PVVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            + ++D    C + W EG SL +T+F CLY H    V    + A +L  L+ C IAR+ V  A ++EEEDF S T+GF++A  V D  +  +L   E  ++ RV+
Sbjct:   82 IGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFVEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVK 185          
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Match: UPI0018B0A780 (N-alpha-acetyltransferase 35, NatC auxiliary subunit-like n=1 Tax=Chlorocebus sabaeus TaxID=60711 RepID=UPI0018B0A780)

HSP 1 Score: 70.5 bits (171), Expect = 1.660e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   43 LSVLDGMTICEVAWHEGGSLPETLFACLYFH--PVVLSAIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESLADLLGLAERAVRERVR 348
            + ++D    C + W EG SL +T+F CLY H    +    + A +L  L+ C IAR+ V  A ++EEEDF S T+GF++A  V D  +  +L   E  ++ RV+
Sbjct:   91 IGIMDTCFCCLITWLEGHSLAQTVFTCLYIHNPDFIEDPAMKAFALGILKICDIAREKVNKAAVFEEEDFQSMTYGFKMANSVTDLRVTGMLKDVEDDMQRRVK 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54035.12771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS56_ECTSI2.960e-4358.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGZ5_9STRA1.080e-2139.44Mak10 subunit, NatC N-terminal acetyltransferase-d... [more]
UPI00109BCEE91.620e-1435.24N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
A0A8C4NDR6_EPTBU7.160e-1438.46N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
A0A6P8II77_ACTTE9.660e-1434.82Protein MAK10 homolog n=1 Tax=Actinia tenebrosa Ta... [more]
A0A8C4N7Z4_EPTBU1.020e-1338.46N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
F6UFC8_MOUSE6.530e-1336.54N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
UPI00138FFF811.160e-1233.65N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
S9Y4R5_CAMFR1.380e-1237.50N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]
UPI0018B0A7801.660e-1236.54N-alpha-acetyltransferase 35, NatC auxiliary subun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54035contigH-elongata_contig54035:900..1766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue3.5e-37
Seed eggNOG ortholog2880.D7FS56
Preferred nameMAK10
KEGG koko:K20823
GOsGO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006914,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010467,GO:0016236,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0031248,GO:0031365,GO:0031414,GO:0031417,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0061919,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234
EggNOG free text desc.smooth muscle cell proliferation
EggNOG OGsKOG2343@1,KOG2343@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.2711031-CDS-H-elongata_contig54035:899..11041622930880.2711031-CDS-H-elongata_contig54035:899..1104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 900..1104 -
1691679609.1773167-CDS-H-elongata_contig54035:899..11041691679609.1773167-CDS-H-elongata_contig54035:899..1104Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 900..1104 -
1622930880.292486-CDS-H-elongata_contig54035:1611..17661622930880.292486-CDS-H-elongata_contig54035:1611..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 1612..1766 -
1691679609.1875021-CDS-H-elongata_contig54035:1611..17661691679609.1875021-CDS-H-elongata_contig54035:1611..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54035 1612..1766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54035.12771.1prot_H-elongata_contig54035.12771.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54035 900..1766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54035.12771.1

>prot_H-elongata_contig54035.12771.1 ID=prot_H-elongata_contig54035.12771.1|Name=mRNA_H-elongata_contig54035.12771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MEVTQPQISYSQRALSVLDGMTICEVAWHEGGSLPETLFACLYFHPVVLS
AIILAQSLATLRCCSIARDVVILADIYEEEDFYSSTFGFRLAPPVEDESL
ADLLGLAERAVRERVRGGAV
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mRNA from alignment at H-elongata_contig54035:900..1766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54035.12771.1 ID=mRNA_H-elongata_contig54035.12771.1|Name=mRNA_H-elongata_contig54035.12771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig54035:900..1766- (Himanthalia elongata Himel1 dioecious)
ATGGAAGTCACGCAGCCGCAGATCTCCTACAGTCAGCGTGCCCTCTCGGT GCTCGACGGTATGACAATCTGCGAGGTAGCCTGGCACGAAGGAGGATCTC TTCCCGAGACGCTGTTCGCCTGCCTCTACTTCCACCCGGTGGTTTTGTCA GCAATGTTGGCGGATCTCGGCTGGAAGCTGCCCCCGCTGACTGTTGGCGG AGGCAGTCATCCGACGCTGGATTTGAACATCAAGAAAGGTGTGTATCACA GGAGACAAACCATCCCGTCGAACTATAGGGGGTTGTAGCTAGCGGAGTTA AACCTTTTACTTTGCTTGGCTGGTAAGGTCGGGTATTAACGGGGTTACAA AAAAAATAATTTCCAGTCGATTTCACTTTAAATCGGGCTCTGATTGGTCG AAAGCTAAATAACGCCTAGCCTTTGTCCACTTAGAGTCCGATTTAAATTC AAATCGACTGGATTTTTTTTTCTATAACCCCGTTAATACCCGTCCTAACC CTAGAACAGCAGCAGCAGCAACCACTGCAAACTTCTTTGGACCGGTCGTG TTCTCTTGCTAATGGCCGTACGCGTCCATTCTGCTTTGGTGATATATTTC ATGCCGCATCTGCTTGCAGGAGAGTACGCGTGGAAGCCAGCGGACCGAGC GCTCACGCTGAGCATTTTGGCCCAGTCCCTTGCCACGCTGCGCTGCTGTT CCATTGCTCGCGACGTGGTTATCCTGGCCGACATCTACGAGGAGGAGGAC TTTTACTCAAGCACCTTCGGCTTCCGTCTCGCTCCGCCCGTGGAGGACGA GAGCCTGGCGGATTTGTTGGGCTTAGCTGAGAGGGCTGTTCGAGAGAGGG TGAGGGGTGGTGCTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig54035:900..1766-

>mRNA_H-elongata_contig54035.12771.1 ID=mRNA_H-elongata_contig54035.12771.1|Name=mRNA_H-elongata_contig54035.12771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig54035:900..1766- (Himanthalia elongata Himel1 dioecious)
ATGGAAGTCACGCAGCCGCAGATCTCCTACAGTCAGCGTGCCCTCTCGGT
GCTCGACGGTATGACAATCTGCGAGGTAGCCTGGCACGAAGGAGGATCTC
TTCCCGAGACGCTGTTCGCCTGCCTCTACTTCCACCCGGTGGTTTTGTCA
GCAATATGGAAGTCACGCAGCCGCAGATCTCCTACAGTCAGCGTGCCCTC
TCGGTGCTCGACGGTATGACAATCTGCGAGGTAGCCTGGCACGAAGGAGG
ATCTCTTCCCGAGACGCTGTTCGCCTGCCTCTACTTCCACCCGGTGGTTT
TGTCAGCAATCATTTTGGCCCAGTCCCTTGCCACGCTGCGCTGCTGTTCC
ATTGCTCGCGACGTGGTTATCCTGGCCGACATCTACGAGGAGGAGGACTT
TTACTCAAGCACCTTCGGCTTCCGTCTCGCTCCGCCCGTGGAGGACGAGA
GCCTGGCGGATTTGTTGGGCTTAGCTGAGAGGGCTGTTCGAGAGAGGGTG
AGGGGTGGTGCTGTTCATTTTGGCCCAGTCCCTTGCCACGCTGCGCTGCT
GTTCCATTGCTCGCGACGTGGTTATCCTGGCCGACATCTACGAGGAGGAG
GACTTTTACTCAAGCACCTTCGGCTTCCGTCTCGCTCCGCCCGTGGAGGA
CGAGAGCCTGGCGGATTTGTTGGGCTTAGCTGAGAGGGCTGTTCGAGAGA
GGGTGAGGGGTGGTGCTGTT
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