mRNA_H-elongata_contig54022.12769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54022.12769.1
Unique NamemRNA_H-elongata_contig54022.12769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: D7FKD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD1_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.520e-58
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL--AEDSGKDCYWQDSECY----EGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            VES+GKYS+QKAFR+ +E KTFPLHTAII+V++GEVTGISWDDGCHFC SS C+DNTY Y+G+L   E +G+DCYW DS+C     E  VS+LCQLTVYVVWTGTDSKGN+FTS +KRLSMY
Sbjct:  119 VESMGKYSFQKAFRLREEEKTFPLHTAIISVDEGEVTGISWDDGCHFCGSSQCEDNTYDYTGQLIGGEGNGQDCYWPDSDCLQDGVEDQVSALCQLTVYVVWTGTDSKGNFFTSFAKRLSMY 240          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S2USG7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USG7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.370e-34
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADEGK--TFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL-AEDSGKDCYWQDSECY--EGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            VE+   Y++QK +R +  G   TFPL  A+I V+KGEVTG+ WDDGC FC S++C  NTY Y G L   D  KDC+ +D++C   +G+VS  C+L +YV W+GTD  G    S+ KRLS Y
Sbjct:    6 VENQQHYTFQKLYRTSQRGNGVTFPLLQAVILVDKGEVTGVIWDDGCFFCGSANCVHNTYAYDGSLRTTDVDKDCFIEDNDCMNSDGTVSEFCELAIYVAWSGTDKYGRNLRSAEKRLSQY 126          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A835ZB01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB01_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.780e-33
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSG-----KDCYWQDSE-CYE--GSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            VES G  S+QK+FR A  G TFPL TAII V++G +T I+WDDGCHFC+   CQ NT+ ++G      G     KDCY++D++ C    G VS  CQL VYVVW+GTD  G +F S  KRL ++
Sbjct:  114 VESNGVASFQKSFRQASLGITFPLFTAIINVDRGNITSITWDDGCHFCARQFCQANTFNFAGTNTTADGQALGGKDCYYEDAKSCVNASGQVSDACQLEVYVVWSGTDRDGIFFQSQQKRLGLF 237          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S2R547_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R547_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.660e-30
Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIA-DEGK--TFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSGKDCYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            VES  ++SYQK FR   D G   TFPL  A++ V++G+V GI+WD GC  C  S C  N Y Y G L +D+  +C+ +D++C     SS C LTVYVVWTGTD  GNY  S  KRLS +
Sbjct:  102 VESESEFSYQKLFRTTMDNGDQATFPLAVAVVDVDEGKVKGITWDTGCFDCEESSCTKNQYRYDGSLFKDTHDECHKKDTQCS----SSKCDLTVYVVWTGTDKNGNYLLSQQKRLSNF 216          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: W7TT05_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT05_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.540e-27
Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADE-GKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSD-CQDNTYMYSGELAEDSG--KDCYWQDSECYEGSVS--SLCQLTVYVVWTGTDSKGNYFTSSSKRLSM 345
            VES+G  S+QK +R  D  G+TF + TAII +++G VTGI++D+GC  C +SD C +NTY ++GE     G   DC+  D+EC   + +  + CQL++Y+ WTGTD++GN+ TSSS+R S+
Sbjct:  107 VESMGVASFQKLYRQEDSLGRTFSVLTAIINLDRGVVTGITFDNGCPLCDNSDRCVENTYDFTGERYTGVGATSDCFLTDAECALNAQADRNACQLSLYITWTGTDAQGNFLTSSSRRFSL 227          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S4AKM8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKM8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.550e-26
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   22 SYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELA--EDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            S+QK +   D+ K FP  TAII V KGEVTGI+WDD C FC S +C+DNT+ Y GE+A  E++ +    CY     C + S  + C L +YVVWTGTDSKG    SS+ R S +
Sbjct:   20 SFQKLYYNGDD-KVFPFLTAIINVHKGEVTGITWDDACVFCGSDECEDNTFRYDGEIATKEEARQPVGGCYNTVERC-QSSKKAECDLILYVVWTGTDSKGRDMMSSANRFSAF 131          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S3UNI9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI9_HETAK)

HSP 1 Score: 105 bits (263), Expect = 9.930e-26
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   19 YSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL---AEDSGKDCYWQDSECYEGS---VSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            +SYQK +R   +  TFPL   +  +++G V G++WDDGC +CS S C +NTY Y G L   A+  GKDCY  D+ C + +   V   CQL VY+ W GTD  G    S+ +RLS +
Sbjct:  114 FSYQKLYR--KDSNTFPLFQIVFVLDEGVVEGVTWDDGCLYCSGSSCTENTYEYDGSLYTSADLPGKDCYLADASCVDSATDEVLDFCQLEVYLAWAGTDQDGRNLRSAERRLSAF 227          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S4AKE4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKE4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.480e-25
Identity = 58/121 (47.93%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELA--EDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
             ES    S+QK +   D+ K FP  TAII V KGEVTGI+WDD C FC S +C+DNT+ Y GE+A  E++ +    CY     C + S  + C L +YVVWTGTDSKG    SS+ R S +
Sbjct:  142 AESQTALSFQKLYYNGDD-KVFPFLTAIINVHKGEVTGITWDDACVFCGSDECEDNTFRYDGEIATKEEARQPVGGCYNTVERC-QSSKKAECDLILYVVWTGTDSKGRDMMSSANRFSAF 260          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A8K1CV35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV35_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 3.990e-25
Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   46 ADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAED---SGKDCYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            ++ G  +P  TAI++V+KGEVTG++WDDGC+FC  S C+ N+Y Y   ++      G  C+ Q S C  G+ ++ C LT+YV WTGTDS G+Y +S+  R+S +
Sbjct:  109 SERGHIYPYMTAIVSVKKGEVTGVTWDDGCYFCDHSMCEPNSYRYPTNVSSQLTGEGYTCFNQMSSC-SGTNATACDLTIYVGWTGTDSNGDYLSSAGMRMSQF 211          
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A2D4C851_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C851_PYTIN)

HSP 1 Score: 103 bits (257), Expect = 5.390e-25
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
            + S+   S  K +  +D G  +P  TAII+V+KG+V G+SWDDGC+FC S  C+ N Y ++  ++    K+   CY   + C  G  ++ C LT+Y+ WTGTDSKGNY +S+  R+S +
Sbjct:   93 ISSMAMRSAYKLYA-SDAGHIYPFLTAIISVKKGQVQGVSWDDGCYFCGSEMCEPNLYRFASNVSSRVAKEGYTCYNNVATC-SGPNATSCDLTIYIGWTGTDSKGNYLSSAGLRMSQF 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKD1_ECTSI1.520e-5872.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2USG7_9STRA3.370e-3448.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZB01_9STRA5.780e-3350.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R547_9STRA1.660e-3049.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TT05_9STRA4.540e-2746.28Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S4AKM8_9STRA3.550e-2649.12Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3UNI9_HETAK9.930e-2643.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4AKE4_9STRA1.480e-2547.93Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8K1CV35_PYTOL3.990e-2544.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C851_PYTIN5.390e-2541.18Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54022contigH-elongata_contig54022:313..2115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue6.7e-46
Seed eggNOG ortholog2880.D7FKD1
EggNOG OGs2AMNC@1,2RZCH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005750.1
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54022.12769.1prot_H-elongata_contig54022.12769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54022 313..2115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.038184-CDS-H-elongata_contig54022:312..4171622930880.038184-CDS-H-elongata_contig54022:312..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 313..417 -
1691679609.097969-CDS-H-elongata_contig54022:312..4171691679609.097969-CDS-H-elongata_contig54022:312..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 313..417 -
1622930880.0579274-CDS-H-elongata_contig54022:954..10921622930880.0579274-CDS-H-elongata_contig54022:954..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 955..1092 -
1691679609.1092415-CDS-H-elongata_contig54022:954..10921691679609.1092415-CDS-H-elongata_contig54022:954..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 955..1092 -
1622930880.08014-CDS-H-elongata_contig54022:2010..21151622930880.08014-CDS-H-elongata_contig54022:2010..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 2011..2115 -
1691679609.1212504-CDS-H-elongata_contig54022:2010..21151691679609.1212504-CDS-H-elongata_contig54022:2010..2115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54022 2011..2115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54022.12769.1

>prot_H-elongata_contig54022.12769.1 ID=prot_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSS
SDCQDNTYMYSGELAEDSGKDCYWQDSECYEGSVSSLCQLTVYVVWTGTD
SKGNYFTSSSKRLSMY
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mRNA from alignment at H-elongata_contig54022:313..2115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54022.12769.1 ID=mRNA_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1803bp|location=Sequence derived from alignment at H-elongata_contig54022:313..2115- (Himanthalia elongata Himel1 dioecious)
GTGGAGAGCTTGGGCAAGTACTCCTACCAGAAGGCGTTCCGAATAGCGGA CGAGGGCAAGACGTTTCCGCTGCACACGGCAATCATCGCCGTTGAGAAAG GAGAGGTGCGGCCCAAGTCGCGAAGGGAGGGAAGGCGTTGATGAAAGGGC AGGAATCGAGGCGATTTTCTCGTGTGTTTGTGTGTGTGTATATTATGTAG GTATATATTTATTAAATTGCACATAACCGCGCAATCCCGCTCTCTGTCAT GCTAGTCCTTCTAGGCTACTCTCGCATTGATCCTCCTTCCAATGTGGATC AATGATGTTTGTAACGAAAACGTATGATCAGACGCGTTTGTGTGTGTGTG TGTGTGTGTGTGCTTTATGCCCCTTCGTATCGAGCACCATCAAGGAAGTG GTCGGGTCTTTTTTCCACTAACCAGCGTATATTTACCTCTACCCTAACGA ACTTGAAGAAGCATGTGTGGTTAAGAGACGTTTGTACGGTGAAACGCTGC TGGCTGCATTTTTTTCGTGGGGGGGACGCCATGGAGTCTCGCAACGACTT CGGTTGCCCCCCCTCTCCCGCCGGCCCGCCCTCCTTTTTATATCCACCAC CACCTAACGTTATGAACTCGGACAGGTCAAATTTTGACAGTCCGCTTCTG GAAACCTCGAATTGCGATAATATACCATATACACTAAATACCATATCACG ATAGGTCCAAGGCTGACGTTCCGAATTCTAGCATCCCGATACAATTCGAT ATTCCTATTTTCGACCTACCGATATTTGGCGTTCTGAATTTCGGTATATC GATATCTCGCATATCGTTTTGCGGGTCCGATTTATTTCTGGGTCTCCGGA TCTTCACCTCCAGCGTTTACGCACACCCAGCTCACCGAAGACGCGTGCCG TTCGCGTTCCCCGTTCCCCTCGCGTTTTCCCCTCTACCTACAACTCTTTC GGAGCCTCCCCCCCCTCTTCGCCCCTATAATATACCGTACCGATATCTTG TCTTCCTTCTCCGTCTCTCGCAGGTGACCGGGATCTCGTGGGACGACGGA TGCCACTTCTGCAGCTCGAGCGACTGTCAGGATAACACGTACATGTACTC GGGTGAGCTGGCCGAGGACTCCGGCAAAGACTGCTACTGGCAAGACTCGG AGTGCTACGAGGTACGCACCAAGGCACGGCAAGAATGAAAACCAGAGCGT GGAGTACCACGACCTGGGCGAAGCGTGCGAGGCGAATGCCTGAGGCGGCG TAATCTACCGTTTCTTTTGAACGTCATGTTTTGTGTGCACAGCGCAGTAC CCCCGTTGTCGTCGTACCACGCTGGACACGCCGATGCTTGTATTTTTTCC ACGGGTGGATGGCCTTGCATCGTCACGTCCACTCCCGGCTCGAGAACAGC AAGAGCGAACGAACACCAGTCTGCGCGATGTGACCGGTCCGACCGCTCGT GGATTTTTTCTTTTCACACACAGCGCAAAAATCTCACCACCCTCGCAGAC CACGCCGTTTGGCACTTTCGCTCTGTCTGTTATTCTGGGACCACGGGCTA TGAAAGGATGGGCAGCTAGCGTTGAGGGAGGTAGGATTGGTGCAACCGAA CAGGTTAAATTACTTTCACCGACAGAAATCGAGGCAAACCCCAGCTGACA AGCCCTAACTCGAAAANNNNNNNNNNCCCCTCCCAGGATGGGATGGAGGG AAGCGTTAGCTCGCTGTGCCAGCTGACGGTGTACGTGGTATGGACCGGTA CCGATTCGAAGGGGAATTATTTCACCAGCTCCTCGAAACGCCTCTCGATG TAT
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Coding sequence (CDS) from alignment at H-elongata_contig54022:313..2115-

>mRNA_H-elongata_contig54022.12769.1 ID=mRNA_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig54022:313..2115- (Himanthalia elongata Himel1 dioecious)
GTGGAGAGCTTGGGCAAGTACTCCTACCAGAAGGCGTTCCGAATAGCGGA
CGAGGGCAAGACGTTTCCGCTGCACACGGCAATCATCGCCGTTGAGAAAG
GAGAGGTGGAGAGCTTGGGCAAGTACTCCTACCAGAAGGCGTTCCGAATA
GCGGACGAGGGCAAGACGTTTCCGCTGCACACGGCAATCATCGCCGTTGA
GAAAGGAGAGGTGACCGGGATCTCGTGGGACGACGGATGCCACTTCTGCA
GCTCGAGCGACTGTCAGGATAACACGTACATGTACTCGGGTGAGCTGGCC
GAGGACTCCGGCAAAGACTGCTACTGGCAAGACTCGGAGTGCTACGAGGT
GACCGGGATCTCGTGGGACGACGGATGCCACTTCTGCAGCTCGAGCGACT
GTCAGGATAACACGTACATGTACTCGGGTGAGCTGGCCGAGGACTCCGGC
AAAGACTGCTACTGGCAAGACTCGGAGTGCTACGAGGGAAGCGTTAGCTC
GCTGTGCCAGCTGACGGTGTACGTGGTATGGACCGGTACCGATTCGAAGG
GGAATTATTTCACCAGCTCCTCGAAACGCCTCTCGATGTATGGAAGCGTT
AGCTCGCTGTGCCAGCTGACGGTGTACGTGGTATGGACCGGTACCGATTC
GAAGGGGAATTATTTCACCAGCTCCTCGAAACGCCTCTCGATGTAT
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