mRNA_H-elongata_contig54020.12768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54020.12768.1
Unique NamemRNA_H-elongata_contig54020.12768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: D7G6V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.130e-33
Identity = 94/209 (44.98%), Postives = 110/209 (52.63%), Query Frame = 1 
Query:  478 ADSRHPG-TRKERRGWGKTRPKPPAAPADNDSRSRDGEDASFTRAVPEDRRSEWPKRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLPPD-YIDAASADWGKHGN---EVGWVVDKKPREVPKHLVGNKED--------APVAVERVGSKDHRVGVSGAQSSRKPKSKYKNLA*PLAMKESSENKTGRKDKQG 1065
            A +  PG ++K+RRGWGK R     A AD        +DA       ++ R     RKK RSRQKNIRKDKRP ++RPAYLR GDPEFSGRGLT ETR  LGLP D + DA  A WGK G       WV+DKKPR +PKHL  +  D        +  A    G K          SS   KSKYKNL+     K S+  K   K   G
Sbjct:   15 AGTAEPGESKKQRRGWGKARSTSAGAAADTAENVNHAKDAGERNGRTDEHRP----RKKTRSRQKNIRKDKRPADKRPAYLRAGDPEFSGRGLTEETRKFLGLPQDDFGDAPPAGWGKPGKVGPTASWVIDKKPRRLPKHLEPDAGDEGTNAATTSAAAYTDAGRKSTPAAPDATPSST-GKSKYKNLSLAPGGKTSANEKKRAKGGHG 218
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: A0A6H5KDC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC6_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.550e-27
Identity = 84/192 (43.75%), Postives = 100/192 (52.08%), Query Frame = 1 
Query:  499 TRKERRGWGKTRPKPPAAPADNDSRSRDGEDASFTRAVPEDRRSEWPKRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLPP-DYIDAASADWGKHGN---EVGWVVDKKPREVPKHLVGNKED-------APVAVERVGSKDHRVGVSGAQSSRKPKSKYKNLA*PLAMKESSENK 1041
            ++K+RRGW K R K   A AD        +DA       ++ RS    RKK RSRQKNIRKD RP ++RPAYLR  +PEFSGRGLT ETR  LGLP  D+ DA  A WGKHG       WV+DKKPR +PK+L  +  D         VA                      KSKYKNL+     K S+  K
Sbjct:  282 SKKQRRGWRKARSKSAGAAADTAENVDQAKDAGGRSGRMDEHRS----RKKTRSRQKNIRKDNRPADERPAYLRAENPEFSGRGLTEETRKFLGLPQADFGDAPPAGWGKHGKVRPTASWVIDKKPRRLPKYLEPDAGDEGTNAATTSVAASTDXXXXXXXXXXXXXXXATGKSKYKNLSLTPGGKTSANKK 469
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: A0A836CE61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE61_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.310e-9
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 1 
Query:  640 KRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLPPDYIDAASADWGKHGNEVGWVVDKKPREVPKHLVGNKEDAPVAVERVGSKDHRVGVSGAQSSRKPKSKYKNLA 1005
            KR K RSRQKNIR+DKR   QRPA+L+ G  +F GR +T ETR  LGLP    D  +A        + W VDK+P                         H  G  G +++R+   KYKNL+
Sbjct:  248 KRTKTRSRQKNIRRDKRDTAQRPAHLQPGSDDFRGRAMTDETRQRLGLPSGAGDDGAA-------MLTWAVDKQP------------------------SHGEGAGGGKTARR---KYKNLS 335
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: A0A1E7EUM6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.800e-6
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  640 KRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLPPDYIDAASADWGKHGNEVG---WVVDKKP 864
            KRKKVRSRQKNI KD R  +++PA+L  G+P + GR +T  TR  L LPP       +      N+ G   +V+D+ P
Sbjct:  224 KRKKVRSRQKNIYKDNRTKDEKPAHLTRGNPNYQGRPMTEATREKLNLPPPTKKIRPSYNNSSKNQDGNTLFVIDRSP 301
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: K0SN52_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SN52_THAOC)

HSP 1 Score: 59.7 bits (143), Expect = 5.380e-6
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  640 KRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLP-PDYIDAASA---DWGKHGNEVGWVVDKKPRE 870
            KRKK RSRQKNIRKD R +E RP +L  G  +++GR LT ET+  LG+   D    A A   +W +   E   VVDK  R+
Sbjct:  141 KRKKTRSRQKNIRKDNRSIEDRPTHLVRGSADYAGRPLTFETKKKLGIARTDQQQTAKAFGGNWAEEKVETS-VVDKSTRD 220
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: A0A7S3Q041_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q041_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.640e-6
Identity = 44/132 (33.33%), Postives = 61/132 (46.21%), Query Frame = 1 
Query:  649 KVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGLPPDYID------------AASADWGKHGNEVGWVVDKKPREVPKHL-VGNKEDAPVAVERVGS-KDHRVGVSGAQSSRKPKSKYKNL 1002
            K+RSRQKNI+KD R   Q+P +L++G  E++GR +T ETR+ L LP                 + +A    H ++ G  +D    E    L V    + P   E VGS K               KSK+KNL
Sbjct:  179 KIRSRQKNIKKDSRTSSQKPEHLKLGHKEYAGRPMTQETRSYLNLPESRAQRIRREREKMKETSTTAANSHHFDQGGLAIDDLLGETSTGLDVATSSELPETGELVGSSKXXXXXXXXXXXXXXXKSKFKNL 310
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: A0A7S3GW78_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GW78_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.720e-5
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  664 QKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGL 783
            QKNIR+D RP E +PAYL +G+ EF GR LT +T++VLGL
Sbjct:  181 QKNIRRDNRPAESKPAYLHVGNKEFKGRQLTEQTKSVLGL 220
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BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Match: B8C7Z8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7Z8_THAPS)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-5
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  613 PEDRRSEWPKRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRGLTPETRNVLGL 783
            P D ++  P+RKK+RSRQKNIRKD R  E++P +L  G+  ++GR LT  TR+ LGL
Sbjct:  148 PNDSKNNKPQRKKIRSRQKNIRKDTRATEEKPTHLVHGNVGYAGRPLTKATRDKLGL 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54020.12768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G6V5_ECTSI3.130e-3344.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC6_9PHAE3.550e-2743.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CE61_9STRA2.310e-938.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1E7EUM6_9STRA2.800e-643.59Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
K0SN52_THAOC5.380e-646.91Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S3Q041_9STRA6.640e-633.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3GW78_9STRA1.720e-562.50Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
B8C7Z8_THAPS2.800e-552.63Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54020contigH-elongata_contig54020:2378..3798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_012090.1
Exons1
Model size1421
Cds size1008
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930879.944029-CDS-H-elongata_contig54020:2377..33851622930879.944029-CDS-H-elongata_contig54020:2377..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54020 2378..3385 +
1691679609.0798986-CDS-H-elongata_contig54020:2377..33851691679609.0798986-CDS-H-elongata_contig54020:2377..3385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54020 2378..3385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930879.9781947-UTR-H-elongata_contig54020:3385..37981622930879.9781947-UTR-H-elongata_contig54020:3385..3798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54020 3386..3798 +
1691679609.0884328-UTR-H-elongata_contig54020:3385..37981691679609.0884328-UTR-H-elongata_contig54020:3385..3798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54020 3386..3798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54020.12768.1prot_H-elongata_contig54020.12768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54020 2378..3385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54020.12768.1

>prot_H-elongata_contig54020.12768.1 ID=prot_H-elongata_contig54020.12768.1|Name=mRNA_H-elongata_contig54020.12768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=336bp
QPEPTALQKKLARKHRREEIADAIAGDVGTHGVAEGDIESEGESKTASFK
RKKKEPRIDRAAGERPAKITVDKQTERELGKKVVKVKEDDEGIGNNEHLK
SEKRISNRKTRRNKINSRGAGGDGGGDAAVSEPQQAAAENANASVEEPLT
KEQEPSDECADSRHPGTRKERRGWGKTRPKPPAAPADNDSRSRDGEDASF
TRAVPEDRRSEWPKRKKVRSRQKNIRKDKRPLEQRPAYLRIGDPEFSGRG
LTPETRNVLGLPPDYIDAASADWGKHGNEVGWVVDKKPREVPKHLVGNKE
DAPVAVERVGSKDHRVGVSGAQSSRKPKSKYKNLA*
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mRNA from alignment at H-elongata_contig54020:2378..3798+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54020.12768.1 ID=mRNA_H-elongata_contig54020.12768.1|Name=mRNA_H-elongata_contig54020.12768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-elongata_contig54020:2378..3798+ (Himanthalia elongata Himel1 dioecious)
CAGCCCGAGCCGACCGCCCTGCAGAAGAAGCTAGCCCGAAAGCATCGCCG
CGAAGAAATCGCGGACGCCATTGCGGGCGATGTCGGTACCCACGGTGTAG
CGGAAGGCGATATCGAGAGCGAAGGAGAAAGCAAGACAGCCTCCTTCAAG
CGTAAAAAGAAAGAGCCACGAATTGATCGAGCGGCGGGTGAACGGCCGGC
CAAAATTACGGTCGATAAGCAGACTGAGAGGGAATTGGGCAAAAAGGTCG
TAAAGGTGAAGGAGGATGACGAAGGCATAGGAAATAACGAACACCTGAAG
AGCGAGAAGCGCATCTCGAATAGAAAGACCAGGCGAAATAAAATAAATTC
GCGGGGAGCCGGGGGCGATGGCGGAGGGGATGCGGCCGTGAGTGAACCGC
AGCAGGCCGCAGCTGAAAACGCTAACGCCTCTGTAGAAGAACCTTTGACG
AAAGAACAAGAACCAAGCGACGAATGTGCTGATTCGCGACACCCAGGAAC
CAGAAAAGAACGGAGGGGCTGGGGGAAGACACGCCCGAAGCCACCGGCAG
CTCCGGCGGATAACGACAGTAGGAGCCGCGACGGTGAAGATGCGTCTTTT
ACAAGGGCTGTACCCGAAGACAGAAGAAGCGAATGGCCTAAGCGCAAGAA
GGTACGGTCACGGCAGAAGAACATCAGGAAAGACAAGCGTCCCTTGGAGC
AGCGGCCCGCTTACCTCCGCATCGGGGACCCGGAATTCAGCGGGCGTGGT
CTCACCCCGGAGACTCGAAATGTTTTGGGCTTGCCGCCGGACTACATCGA
CGCCGCTTCCGCAGACTGGGGAAAACATGGGAATGAAGTCGGGTGGGTGG
TAGATAAAAAGCCTAGAGAAGTTCCCAAACACCTCGTTGGGAATAAGGAG
GACGCCCCCGTTGCTGTGGAGAGGGTGGGCTCCAAAGACCATCGTGTTGG
GGTGAGCGGGGCTCAATCATCGAGGAAGCCAAAGTCAAAATACAAGAACC
TTGCCTGACCGCTTGCGATGAAGGAGAGCTCCGAGAACAAGACAGGGAGG
AAGGACAAGCAGGGCTGATGGGTTGTTGCTCGGGCAATCTCTACATCTGG
GAGGCTCTAGTAGTGAAGATAGGACATATAACGTGAATGATCCAAAGCGA
AGATAAGGAGGGTGGTTTGTGCACTGAGCATATCTGAGGGAATGTTGCAG
GAAGGAGGCGATCGAACTATTAGTACTATTATTACTATTAATACTACTAC
TATTACTTAATACCGGTTATTGAAGATAGCTTCGCGGCTACAGCATCTAT
CTCATGAATACAGTACTGTAGGTCAACGGGTCTATTGAGTAAGATGGGGT
TATTTCTAGGATTGAAATCGAGATGCATGCATACGTTTTTCACACGTGTG
ATTTACAACATATTTTGTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig54020:2378..3798+

>mRNA_H-elongata_contig54020.12768.1 ID=mRNA_H-elongata_contig54020.12768.1|Name=mRNA_H-elongata_contig54020.12768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2016bp|location=Sequence derived from alignment at H-elongata_contig54020:2378..3798+ (Himanthalia elongata Himel1 dioecious)
CAGCCCGAGCCGACCGCCCTGCAGAAGAAGCTAGCCCGAAAGCATCGCCG
CGAAGAAATCGCGGACGCCATTGCGGGCGATGTCGGTACCCACGGTGTAG
CGGAAGGCGATATCGAGAGCGAAGGAGAAAGCAAGACAGCCTCCTTCAAG
CGTAAAAAGAAAGAGCCACGAATTGATCGAGCGGCGGGTGAACGGCCGGC
CAAAATTACGGTCGATAAGCAGACTGAGAGGGAATTGGGCAAAAAGGTCG
TAAAGGTGAAGGAGGATGACGAAGGCATAGGAAATAACGAACACCTGAAG
AGCGAGAAGCGCATCTCGAATAGAAAGACCAGGCGAAATAAAATAAATTC
GCGGGGAGCCGGGGGCGATGGCGGAGGGGATGCGGCCGTGAGTGAACCGC
AGCAGGCCGCAGCTGAAAACGCTAACGCCTCTGTAGAAGAACCTTTGACG
AAAGAACAAGAACCAAGCGACGAATGTGCTGATTCGCGACACCCAGGAAC
CAGAAAAGAACGGAGGGGCTGGGGGAAGACACGCCCGAAGCCACCGGCAG
CTCCGGCGGATAACGACAGTAGGAGCCGCGACGGTGAAGATGCGTCTTTT
ACAAGGGCTGTACCCGAAGACAGAAGAAGCGAATGGCCTAAGCGCAAGAA
GGTACGGTCACGGCAGAAGAACATCAGGAAAGACAAGCGTCCCTTGGAGC
AGCGGCCCGCTTACCTCCGCATCGGGGACCCGGAATTCAGCGGGCGTGGT
CTCACCCCGGAGACTCGAAATGTTTTGGGCTTGCCGCCGGACTACATCGA
CGCCGCTTCCGCAGACTGGGGAAAACATGGGAATGAAGTCGGGTGGGTGG
TAGATAAAAAGCCTAGAGAAGTTCCCAAACACCTCGTTGGGAATAAGGAG
GACGCCCCCGTTGCTGTGGAGAGGGTGGGCTCCAAAGACCATCGTGTTGG
GGTGAGCGGGGCTCAATCATCGAGGAAGCCAAAGTCAAAATACAAGAACC
TTGCCTGACAGCCCGAGCCGACCGCCCTGCAGAAGAAGCTAGCCCGAAAG
CATCGCCGCGAAGAAATCGCGGACGCCATTGCGGGCGATGTCGGTACCCA
CGGTGTAGCGGAAGGCGATATCGAGAGCGAAGGAGAAAGCAAGACAGCCT
CCTTCAAGCGTAAAAAGAAAGAGCCACGAATTGATCGAGCGGCGGGTGAA
CGGCCGGCCAAAATTACGGTCGATAAGCAGACTGAGAGGGAATTGGGCAA
AAAGGTCGTAAAGGTGAAGGAGGATGACGAAGGCATAGGAAATAACGAAC
ACCTGAAGAGCGAGAAGCGCATCTCGAATAGAAAGACCAGGCGAAATAAA
ATAAATTCGCGGGGAGCCGGGGGCGATGGCGGAGGGGATGCGGCCGTGAG
TGAACCGCAGCAGGCCGCAGCTGAAAACGCTAACGCCTCTGTAGAAGAAC
CTTTGACGAAAGAACAAGAACCAAGCGACGAATGTGCTGATTCGCGACAC
CCAGGAACCAGAAAAGAACGGAGGGGCTGGGGGAAGACACGCCCGAAGCC
ACCGGCAGCTCCGGCGGATAACGACAGTAGGAGCCGCGACGGTGAAGATG
CGTCTTTTACAAGGGCTGTACCCGAAGACAGAAGAAGCGAATGGCCTAAG
CGCAAGAAGGTACGGTCACGGCAGAAGAACATCAGGAAAGACAAGCGTCC
CTTGGAGCAGCGGCCCGCTTACCTCCGCATCGGGGACCCGGAATTCAGCG
GGCGTGGTCTCACCCCGGAGACTCGAAATGTTTTGGGCTTGCCGCCGGAC
TACATCGACGCCGCTTCCGCAGACTGGGGAAAACATGGGAATGAAGTCGG
GTGGGTGGTAGATAAAAAGCCTAGAGAAGTTCCCAAACACCTCGTTGGGA
ATAAGGAGGACGCCCCCGTTGCTGTGGAGAGGGTGGGCTCCAAAGACCAT
CGTGTTGGGGTGAGCGGGGCTCAATCATCGAGGAAGCCAAAGTCAAAATA
CAAGAACCTTGCCTGA
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