mRNA_H-elongata_contig54019.12767.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 8.910e-15 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTK 126
WWD+H+AT PLLR+L+ R+LCVPASSA+SERLFSKAG TLTK
Sbjct: 505 WWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTK 546
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A2S2PKJ7_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PKJ7_SCHGA) HSP 1 Score: 55.5 bits (132), Expect = 4.570e-8 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLT 123
WW EH+ P + K+A +LC+PASSASSER+FS AG +T
Sbjct: 107 WWKEHETIYPTIAKVAKNMLCIPASSASSERVFSTAGNIVT 147
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001F5E952F (uncharacterized protein LOC124816970 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5E952F) HSP 1 Score: 55.8 bits (133), Expect = 5.870e-8 Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAG 111
WW +H +TLPLL +LAT +LC+PA+S+ SER+FS +G
Sbjct: 118 WWKKHASTLPLLAQLATNLLCIPAASSCSERVFSASG 154
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001894F835 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001894F835) HSP 1 Score: 56.2 bits (134), Expect = 7.360e-8 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
WW +H++ P L +LA + +C+PASSASSER+FS AG +T SL
Sbjct: 332 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 378
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1D1VIT2_RAMVA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VIT2_RAMVA) HSP 1 Score: 56.2 bits (134), Expect = 7.400e-8 Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
+W EH ATLP L KLA RVL VP SS S ERLFS AG T+ SL
Sbjct: 373 FWQEHAATLPKLYKLAVRVLAVPVSSCSPERLFSDAGNIFTEKRTSL 419
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI0018935EA0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018935EA0) HSP 1 Score: 56.2 bits (134), Expect = 7.410e-8 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
WW +H++ P L +LA + +C+PASSASSER+FS AG +T SL
Sbjct: 431 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 477
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001895F43E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895F43E) HSP 1 Score: 56.2 bits (134), Expect = 7.440e-8 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
WW +H++ P L +LA + +C+PASSASSER+FS AG +T SL
Sbjct: 646 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 692
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1D1V8B9_RAMVA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1V8B9_RAMVA) HSP 1 Score: 53.9 bits (128), Expect = 1.200e-7 Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
+W +H ATLP L KLA RVL VP SS S ERLFS AG T+ SL
Sbjct: 83 FWQKHAATLPKLSKLAVRVLAVPPSSCSPERLFSDAGNGSTEKTTSL 129
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1E1XF33_9ACAR (Putative hoana1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XF33_9ACAR) HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSLR 144
WW HQ T P L L +VLC+PA+SASSER FS AG+ + + L+
Sbjct: 531 WWRSHQNTFPQLAALVRKVLCIPATSASSERNFSAAGYVMNERRTCLK 578
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI000B933A0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B933A0F) HSP 1 Score: 53.5 bits (127), Expect = 1.440e-7 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query: 1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLT 123
WW +H+ P L LA ++LC+PASSASSER+FS AG L+
Sbjct: 73 WWKDHENIYPTLAVLAKQILCIPASSASSERVFSTAGNILS 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54019.12767.1 >prot_H-elongata_contig54019.12767.1 ID=prot_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSLRDRback to top mRNA from alignment at H-elongata_contig54019:3673..3828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54019.12767.1 ID=mRNA_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig54019:3673..3828- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54019:3673..3828- >mRNA_H-elongata_contig54019.12767.1 ID=mRNA_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig54019:3673..3828- (Himanthalia elongata Himel1 dioecious)back to top |