mRNA_H-elongata_contig54019.12767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54019.12767.1
Unique NamemRNA_H-elongata_contig54019.12767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.910e-15
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTK 126
            WWD+H+AT PLLR+L+ R+LCVPASSA+SERLFSKAG TLTK
Sbjct:  505 WWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTK 546          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A2S2PKJ7_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PKJ7_SCHGA)

HSP 1 Score: 55.5 bits (132), Expect = 4.570e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLT 123
            WW EH+   P + K+A  +LC+PASSASSER+FS AG  +T
Sbjct:  107 WWKEHETIYPTIAKVAKNMLCIPASSASSERVFSTAGNIVT 147          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001F5E952F (uncharacterized protein LOC124816970 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5E952F)

HSP 1 Score: 55.8 bits (133), Expect = 5.870e-8
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAG 111
            WW +H +TLPLL +LAT +LC+PA+S+ SER+FS +G
Sbjct:  118 WWKKHASTLPLLAQLATNLLCIPAASSCSERVFSASG 154          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001894F835 (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001894F835)

HSP 1 Score: 56.2 bits (134), Expect = 7.360e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
            WW +H++  P L +LA + +C+PASSASSER+FS AG  +T    SL
Sbjct:  332 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 378          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1D1VIT2_RAMVA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VIT2_RAMVA)

HSP 1 Score: 56.2 bits (134), Expect = 7.400e-8
Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
            +W EH ATLP L KLA RVL VP SS S ERLFS AG   T+   SL
Sbjct:  373 FWQEHAATLPKLYKLAVRVLAVPVSSCSPERLFSDAGNIFTEKRTSL 419          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI0018935EA0 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018935EA0)

HSP 1 Score: 56.2 bits (134), Expect = 7.410e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
            WW +H++  P L +LA + +C+PASSASSER+FS AG  +T    SL
Sbjct:  431 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 477          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI001895F43E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001895F43E)

HSP 1 Score: 56.2 bits (134), Expect = 7.440e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
            WW +H++  P L +LA + +C+PASSASSER+FS AG  +T    SL
Sbjct:  646 WWKDHESKFPRLAELAKKYMCIPASSASSERVFSSAGNIITAKRSSL 692          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1D1V8B9_RAMVA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1V8B9_RAMVA)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-7
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSL 141
            +W +H ATLP L KLA RVL VP SS S ERLFS AG   T+   SL
Sbjct:   83 FWQKHAATLPKLSKLAVRVLAVPPSSCSPERLFSDAGNGSTEKTTSL 129          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: A0A1E1XF33_9ACAR (Putative hoana1 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XF33_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSLR 144
            WW  HQ T P L  L  +VLC+PA+SASSER FS AG+ + +    L+
Sbjct:  531 WWRSHQNTFPQLAALVRKVLCIPATSASSERNFSAAGYVMNERRTCLK 578          
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Match: UPI000B933A0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B933A0F)

HSP 1 Score: 53.5 bits (127), Expect = 1.440e-7
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLT 123
            WW +H+   P L  LA ++LC+PASSASSER+FS AG  L+
Sbjct:   73 WWKDHENIYPTLAVLAKQILCIPASSASSERVFSTAGNILS 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54019.12767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE8.910e-1578.57Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A2S2PKJ7_SCHGA4.570e-856.10Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI001F5E952F5.870e-859.46uncharacterized protein LOC124816970 n=1 Tax=Hydra... [more]
UPI001894F8357.360e-851.06E3 SUMO-protein ligase ZBED1-like n=2 Tax=Rhipicep... [more]
A0A1D1VIT2_RAMVA7.400e-861.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ra... [more]
UPI0018935EA07.410e-851.06E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicep... [more]
UPI001895F43E7.440e-851.06E3 SUMO-protein ligase ZBED1-like n=1 Tax=Rhipicep... [more]
A0A1D1V8B9_RAMVA1.200e-759.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ra... [more]
A0A1E1XF33_9ACAR1.390e-750.00Putative hoana1 (Fragment) n=1 Tax=Amblyomma aureo... [more]
UPI000B933A0F1.440e-756.10zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54019contigH-elongata_contig54019:3673..3828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930879.8891509-CDS-H-elongata_contig54019:3672..38281622930879.8891509-CDS-H-elongata_contig54019:3672..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54019 3673..3828 -
1691679609.0662887-CDS-H-elongata_contig54019:3672..38281691679609.0662887-CDS-H-elongata_contig54019:3672..3828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54019 3673..3828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54019.12767.1prot_H-elongata_contig54019.12767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54019 3673..3828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54019.12767.1

>prot_H-elongata_contig54019.12767.1 ID=prot_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
WWDEHQATLPLLRKLATRVLCVPASSASSERLFSKAGFTLTKNALSLRDR
G*
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mRNA from alignment at H-elongata_contig54019:3673..3828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54019.12767.1 ID=mRNA_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig54019:3673..3828- (Himanthalia elongata Himel1 dioecious)
TGGTGGGATGAACACCAAGCGACCCTTCCACTTCTCCGGAAACTCGCCAC GCGTGTCCTCTGCGTCCCGGCTTCGTCGGCGTCGTCAGAGCGTCTGTTCT CCAAGGCAGGGTTTACTTTGACGAAAAACGCTCTAAGTTTAAGGGACCGA GGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54019:3673..3828-

>mRNA_H-elongata_contig54019.12767.1 ID=mRNA_H-elongata_contig54019.12767.1|Name=mRNA_H-elongata_contig54019.12767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig54019:3673..3828- (Himanthalia elongata Himel1 dioecious)
TGGTGGGATGAACACCAAGCGACCCTTCCACTTCTCCGGAAACTCGCCAC
GCGTGTCCTCTGCGTCCCGGCTTCGTCGGCGTCGTCAGAGCGTCTGTTCT
CCAAGGCAGGGTTTACTTTGACGAAAAACGCTCTAAGTTTAAGGGACCGA
GGGTGATGGTGGGATGAACACCAAGCGACCCTTCCACTTCTCCGGAAACT
CGCCACGCGTGTCCTCTGCGTCCCGGCTTCGTCGGCGTCGTCAGAGCGTC
TGTTCTCCAAGGCAGGGTTTACTTTGACGAAAAACGCTCTAAGTTTAAGG
GACCGAGGGTGA
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