prot_H-elongata_contig53998.12764.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig53998.12764.1
Unique Name	prot_H-elongata_contig53998.12764.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	115

Homology

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.290e-24
Identity = 62/149 (41.61%), Postives = 78/149 (52.35%), Query Frame = 0

Query:    4 PPRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISS----------------------------------VSMLGMLRAHGGRVLQARWRPTAP-----------PAFVTSSTDCAVLLWTI 107
            P    RL+ T+HS G  FL    TGRAL+S+  H DQTR+LDFS +G SLLT S+DGL+G+                                    V ++ MLRAHGGRVLQA+W+P              PAF+TSSTDC V+LWT+
Sbjct:  963 PGDPERLVATAHSGGCIFLXXXXTGRALTSILHHTDQTRSLDFSQDGSSLLTGSFDGLIGVCDCRPRGTHSTASLRLGNPPALGGASGGEAEDPEMDVRVMSMLRAHGGRVLQAKWKPRTAVSGGGLGYGGRPAFLTSSTDCTVMLWTL 1111

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A7S3PSD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSD3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.540e-19
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query:    5 PRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSM-----LGMLRAHGGRVLQARWRPTAPPAFVTSSTD 99
            P  N  + T H DG C +WD+R G A+  ++ H D  R++DFSP+G  LLTAS+DG VGI    +     +   R H  +VLQA+W P  P  FVT S D
Sbjct:   19 PNTNHTVATGHLDGSCTIWDIRKGSAMYCLNQHDDDVRSIDFSPDGRWLLTASFDGTVGIIDTEVFTQDFVASFRGHATKVLQAQWHPKQP-YFVTCSAD 117

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A7RYT9_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYT9_NEMVE)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-10
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 0

Query:   10 LLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGIS--------SVSMLGMLRAHGGRVLQARWRPTAPPAFVTSSTDCAVLLWTI 107
            LL++ H DG C L+D+  GR L     H    R++ FSP+GH LL+ SYD    +         ++    ++  H  +++Q RW P    AFV+SS D    LWT+
Sbjct:  270 LLVSGHEDGGCMLYDITAGRTLQFFKPHTADCRSVRFSPDGHHLLSCSYDTSTILMEMQHDLECNIPPYSVVAQHDDKMIQCRWHPFLM-AFVSSSADRTARLWTL 374

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0XGC5_TRIPS (WD repeat-containing protein 47 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XGC5_TRIPS)

HSP 1 Score: 64.3 bits (155), Expect = 7.740e-10
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  175 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 281

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0ZTC7_9BILA (WD repeat-containing protein 47 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZTC7_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  331 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 437

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0SCX4_9BILA (WD repeat-containing protein 47 (Fragment) n=2 Tax=Trichinella nelsoni TaxID=6336 RepID=A0A0V0SCX4_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  317 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 423

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1JWI8_TRIPS (WD repeat-containing protein 47 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1JWI8_TRIPS)

HSP 1 Score: 64.3 bits (155), Expect = 1.260e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  833 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 939

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BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1ATG8_TRISP (ATP-binding cassette sub-family B member 6, mitochondrial n=5 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1ATG8_TRISP)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  307 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 413

[Close]

BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1NQG7_9BILA (WD repeat-containing protein 47 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V1NQG7_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  946 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 1052

[Close]

BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0TE82_9BILA (ATP-binding cassette sub-family B member 6, mitochondrial n=16 Tax=Trichinella TaxID=6333 RepID=A0A0V0TE82_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 0

Query:    9 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 109
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  947 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 1053

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot

BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
D8LHR8_ECTSI	6.290e-24	41.61	CTLH domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A7S3PSD3_9STRA	2.540e-19	44.00	Hypothetical protein (Fragment) n=1 Tax=Aplanochyt...	[more]
A7RYT9_NEMVE	1.200e-10	34.91	Predicted protein n=3 Tax=Nematostella vectensis T...	[more]
A0A0V0XGC5_TRIPS	7.740e-10	36.36	WD repeat-containing protein 47 n=1 Tax=Trichinell...	[more]
A0A0V0ZTC7_9BILA	1.160e-9	36.36	WD repeat-containing protein 47 n=5 Tax=Trichinell...	[more]
A0A0V0SCX4_9BILA	1.250e-9	36.36	WD repeat-containing protein 47 (Fragment) n=2 Tax...	[more]
A0A0V1JWI8_TRIPS	1.260e-9	36.36	WD repeat-containing protein 47 n=13 Tax=Trichinel...	[more]
A0A0V1ATG8_TRISP	1.290e-9	36.36	ATP-binding cassette sub-family B member 6, mitoch...	[more]
A0A0V1NQG7_9BILA	1.290e-9	36.36	WD repeat-containing protein 47 n=5 Tax=Trichinell...	[more]
A0A0V0TE82_9BILA	1.300e-9	36.36	ATP-binding cassette sub-family B member 6, mitoch...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 27..65 e-value: 2.5 score: 14.5 coord: 66..106 e-value: 0.024 score: 23.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 31..62 e-value: 0.082 score: 13.8
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..33 score: 8.938
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 34..64 score: 8.503
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..113 e-value: 7.8E-21 score: 76.5
None	No IPR available	PANTHER	PTHR19863:SF5	WD REPEAT-CONTAINING PROTEIN 47	coord: 7..105
IPR040067	WD repeat-containing protein 47	PANTHER	PTHR19863	FAMILY NOT NAMED	coord: 7..105
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 11..25
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..75 score: 14.213
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 4..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig53998	contig	H-elongata_contig53998:3315..3773 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig53998.12764.1	mRNA_H-elongata_contig53998.12764.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig53998 3315..3773 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig53998.12764.1 ID=prot_H-elongata_contig53998.12764.1|Name=mRNA_H-elongata_contig53998.12764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
SLSPPRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNG
HSLLTASYDGLVGISSVSMLGMLRAHGGRVLQARWRPTAPPAFVTSSTDC
AVLLWTIPPAGSRL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR040067	WDR47
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf