mRNA_H-elongata_contig53996.12762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53996.12762.1
Unique NamemRNA_H-elongata_contig53996.12762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: D8LF35_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF35_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.820e-102
Identity = 148/225 (65.78%), Postives = 181/225 (80.44%), Query Frame = 1
Query:    1 LPPSNEEVERRAVILDHLERREASFELSDDPVGAIVPREEVYTVFTKRAIRPWDGPHADRAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEAVAGVIKPDTVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            LP   E++ +RA+I+D LERRE +FEL +    A VPR + Y V TK+A+RPWDGPHADRAETHVVVLL+DVFG+ D F R+AAD++A+VC+AIV+VPD+FR+RPW   +PEEEYE WR+ H+P  V+ DIRACV +A+ EYK TSLGL+GFCYGGGRALEEA AGV+KPD VV FYPTRYD+  V S +TCP AAFFAEHDVL GAT+ DA  LR++L  NEKV
Sbjct:  273 LPEPTEDMRKRAIIMDLLERRETTFELEEGLQPADVPRSDAYVVSTKKALRPWDGPHADRAETHVVVLLTDVFGYGDSFTRNAADEIAEVCDAIVVVPDMFRRRPWTHEQPEEEYEDWRSSHDPVAVANDIRACVDFARKEYKATSLGLVGFCYGGGRALEEAAAGVVKPDNVVVFYPTRYDVSEVASRVTCPVAAFFAEHDVLPGATVEDACALREQLRDNEKV 497          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A8J5XPH0_DIALT (DLH domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH0_DIALT)

HSP 1 Score: 145 bits (366), Expect = 1.780e-38
Identity = 85/204 (41.67%), Postives = 110/204 (53.92%), Query Frame = 1
Query:   85 DDPVGAIVP---REEVYTVFTKRAIRPWDGPH-ADRAETHV-VVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDLFRKRPWDAGRPEE--EYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEAVAGVIKPDTVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            DDP     P    E V    T R  R +   H A  AE++  +VLL+D+FGW  P  R+AAD++A  C A VLVPDLFR + W   +P    EYEAWR       V+ D+  C  Y  + +    LGL GFC+GGGRALE      +    VVAFYPTRYD++ V  ++  P  A F   D +AGAT  DA  L   L +N ++
Sbjct:   70 DDPAYEPAPLHTEELVLAGSTGRPARAYLTAHKASMAESNKGIVLLTDIFGWAHPSARAAADRLAASCEAFVLVPDLFRGQAWPESKPPSGPEYEAWRTRIALSDVAGDVLGCARYLNSRHGVELLGLAGFCWGGGRALELVAREWVDAHAVVAFYPTRYDVEPVARAMHLPLLAVFGGADTVAGATPSDAAGLESGLARNPRM 273          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A0G4EPR0_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EPR0_VITBC)

HSP 1 Score: 145 bits (366), Expect = 1.390e-36
Identity = 76/182 (41.76%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  178 RAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEAV----------AGVIKPDT------VVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            R     V++L+DVFG+ D F R  AD++AD  +  V VPDLF  +PW A RP  EYEAWR+ H+P+ V   I A + + K  YK   + ++GFCYGGGRALE  V          A V +         VVAFYPTRYD++ +G  +  P    +A +D L GA   DA+RL +    NE +
Sbjct:  233 RDPRRAVLMLTDVFGYRDRFMRRVADRLADTLSLPVFVPDLFLGQPWSADRPPAEYEAWRSQHDPDRVDDTIGASLRFLKESYKMDVIAVVGFCYGGGRALETGVRYGGMEEAEGAAVCRNRVDKSVRCVVAFYPTRYDVEAIGRQMRVPTCCVYAANDTLPGARKADAERLYEAFRANEDL 414          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: R7QF11_CHOCR (Carboxymethylenebutenolidase homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF11_CHOCR)

HSP 1 Score: 116 bits (291), Expect = 2.150e-28
Identity = 67/172 (38.95%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  166 PHADRAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEAVAGV--IKPDTVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            PH  R     VVL++D+ G+E+   R+ A  +A       +VPDLFR  PW  GR + EYE+WR  H+P  V  DI             TSLGL+GFC+GGGR +EE       + PD  VAFYPTR+D + VG +  CP      + D L    ++    LR+ L  N  V
Sbjct:   30 PH--RPSRTAVVLMTDILGYENHETRAVAMLLA-AHGFTTIVPDLFRGNPWVQGRDKSEYESWRRTHDPATVRGDILLARQALTERSLGTSLGLVGFCFGGGRLMEEVALNTSGLNPDAAVAFYPTRFDPEDVGRNAHCPLLVQTGDRDDLV--PVYVVNTLRETLQANASV 196          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A0G4HN02_9ALVE (DLH domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HN02_9ALVE)

HSP 1 Score: 110 bits (274), Expect = 5.060e-24
Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  196 VVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDLFRKRPW--------------DAGRPEEE--------------YEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEAVAGVIKPDTVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            +VLL DV+G++D   R  AD+++ +CN +V++PDLF   PW              D  R + +              YE WR   +   V A IR+  ++ + E     LGL+GF +GGGRALE ++  ++ P  VVAFYPTRY++  +      P +  FA +D + GA   D + L   L +  +V
Sbjct:  503 LVLLPDVYGYKDKNIRKIADRLSQICNTVVVIPDLFDGNPWKDSMARVVIEKMESDLKRQKGQTPTKADKMEIKRRVYEVWREQIDQSRVHAVIRSTASFLRRELPLDHLGLVGFSFGGGRALEASLCPLVAPSAVVAFYPTRYNMTHICEWAKAPTSLVFAGNDTIQGARPVDLEGLNYGLRQQNRV 690          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A448YVK0_9STRA (SAP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVK0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.830e-23
Identity = 77/208 (37.02%), Postives = 110/208 (52.88%), Query Frame = 1
Query:  163 GPHADRAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAIV-LVPDLFRKRPW--DAGRPE-----EEYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLMGFCYGGGRALEEA-----------VAGVI-----KPDTVVAFYPTRYDIDLV-GSSIT-----C--PAAAF-----FAEHDVLAGATLHDAQRLRDKLLKNEKV 675
            G      E   V++LSDV+G      ++ A+++A  C  +V +VPDLFR RPW  D   P      ++YE WRA H+   +S DIRA  A  + +Y  +SL + G C+GGGRALE A           V G I     +P+ VVA+YPTRY+ +L+ G   T     C  P   F     FA  D L GAT  DA++L+  L +++++
Sbjct:  585 GAQLSAEEVQGVLILSDVYGPFTEATKNLAEKIAFECQPVVCMVPDLFRGRPWREDLTTPGFNQEGQDYETWRATHDDLRISVDIRASAAILREQYGVSSLVVWGTCFGGGRALEIAAGYLPRGQIHDVDGTIGPVPVRPEVVVAWYPTRYNANLLFGKDRTEQLRICEEPGRNFAVMGVFAGKDTLEGATPGDAEKLKSLLGEDDRI 792          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A2Z6LSK9_TRISU (DLH domain-containing protein n=4 Tax=Trifolium TaxID=3898 RepID=A0A2Z6LSK9_TRISU)

HSP 1 Score: 104 bits (260), Expect = 5.230e-23
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  196 VVLLSDVFGWEDPFCRSAADQVADVCNAI-VLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTS----LGLMGFCYGGGRALEEAVAGVIKPD------TVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKVLYTP 687
            ++LLSD++G+ED F R  A +VA  CN   +LVPDLFR+ PW   +P   +E W A HNPE ++ DI A   +   E+        LG++GFC+GGGR LE     V+  D      T ++FY T+ D  L+ S +  P      ++D     T+ + + ++ K+ +  KV+  P
Sbjct:  142 LLLLSDIYGFEDSFTRDFAYRVA--CNGFNILVPDLFRRNPWTKDQPNTLFEQWIARHNPERIAKDITAWTEWLADEFMTAGITKKLGIIGFCFGGGRVLE-----VLARDQGACFGTGISFYGTKID-PLIASDVKVPVLFILGDNDPFC--TVGEMKNIQMKIDRGSKVVIFP 306          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A834WJ43_9FABA (Carboxymethylenebutenolidase-like protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WJ43_9FABA)

HSP 1 Score: 100 bits (250), Expect = 5.300e-22
Identity = 63/172 (36.63%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  196 VVLLSDVFGWEDPFCRSAADQVADVCNAI-VLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTS----LGLMGFCYGGGRALEEAVAGVIKPD------TVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATLHDAQRLRDKLLKNEKVL 678
            ++LLSD+FG++D F R  A +VA  CN   +LVPDLFR  PW   +P+  +E W A  NPE ++ DI     +   E+        LG++GFC+GGGR LE     V+  D      T V+FY TR    +  S I  P      ++D L   +  D Q +  K+ K  KV+
Sbjct:   81 ILLLSDIFGFQDSFTRDFAYRVA--CNGYNILVPDLFRGNPWSKDQPKAMFEQWIARQNPERIAEDISRWTKWMVDEFMAAGISKKLGIIGFCFGGGRVLE-----VLAQDKGACFGTGVSFYGTRMQ-SVAASDIQVPVLFILGDNDPLCAVS--DVQNIEKKIDKGSKVV 242          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A9NP06_PICSI (DLH domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NP06_PICSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.860e-21
Identity = 63/184 (34.24%), Postives = 91/184 (49.46%), Query Frame = 1
Query:   94 VGAIVPREEVYTVFTKRAIRPWDGPHADRAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAI-VLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTS----LGLMGFCYGGGRALEEAVAGVIKP-DTVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATL 627
            V  ++  E+ +  +  +A++  +G          V+LLSDVFG+ED   R  A +++  CN   VLVPDL+R  PW   RP+ E+E WR  H PE V++DI     +   E+        LG++GFC+GGGR +E             V FY TR+D  L  S +  P      E+D L    L
Sbjct:   91 VELVLGEEDSFNAYLLKAVKNNNGA--------AVLLLSDVFGFEDSGTRDFAYRLS--CNGYNVLVPDLYRGEPWSKDRPQSEFEKWRRKHLPERVASDIDISAKWLLEEFSAAGISDKLGIVGFCFGGGRLVETLARDAQSHFGAAVCFYGTRFDPSLA-SQLKIPVLFIVGENDPLCPVDL 263          
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Match: A0A4Y7JNJ4_PAPSO (DLH domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JNJ4_PAPSO)

HSP 1 Score: 97.4 bits (241), Expect = 5.500e-21
Identity = 66/161 (40.99%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  196 VVLLSDVFGWEDPFCRSAADQVADVCNAI-VLVPDLFRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEY----KPTSLGLMGFCYGGGRALEEAVAGVIKPD------TVVAFYPTRYDIDLVGSSITCPAAAFFAEHDVLAGATL-HDAQR 642
            V+LLSDVFG+ED   R  A +VA  CN   VLVPDLFR  PW   RP+++YE WRA  + E VSADI     +   E+        LG++GFC+GGGR LE      +  D      T   FY TR +   V  SI  P      + D L    L HD ++
Sbjct:   43 VLLLSDVFGFEDSATRDFAYRVA--CNGYNVLVPDLFRGNPWSKHRPKDDYENWRAKQSLERVSADINLAAKWMVDEFIAAKMSKKLGIIGFCFGGGRILE-----TLSQDQGSYFGTGACFYGTRINPS-VADSINVPVLFISGDKDPLCPVELLHDLEK 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53996.12762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF35_ECTSI1.820e-10265.78SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8J5XPH0_DIALT1.780e-3841.67DLH domain-containing protein n=2 Tax=Diacronema l... [more]
A0A0G4EPR0_VITBC1.390e-3641.76DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
R7QF11_CHOCR2.150e-2838.95Carboxymethylenebutenolidase homolog n=1 Tax=Chond... [more]
A0A0G4HN02_9ALVE5.060e-2432.98DLH domain-containing protein n=1 Tax=Chromera vel... [more]
A0A448YVK0_9STRA1.830e-2337.02SAP domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A2Z6LSK9_TRISU5.230e-2335.43DLH domain-containing protein n=4 Tax=Trifolium Ta... [more]
A0A834WJ43_9FABA5.300e-2236.63Carboxymethylenebutenolidase-like protein n=1 Tax=... [more]
A9NP06_PICSI2.860e-2134.24DLH domain-containing protein n=1 Tax=Picea sitche... [more]
A0A4Y7JNJ4_PAPSO5.500e-2140.99DLH domain-containing protein n=1 Tax=Papaver somn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53996contigH-elongata_contig53996:258..2561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.5e-84
Seed eggNOG ortholog2880.D8LF35
Preferred nameCMBL
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,map00361,map00364,map00623,map01100,map01110,map01120,map01130
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0019538,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
EC3.1.1.45
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-06_001500.1
Exons3
Model size690
Cds size690
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53996.12762.1prot_H-elongata_contig53996.12762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53996 258..2561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930879.2143471-CDS-H-elongata_contig53996:257..4511622930879.2143471-CDS-H-elongata_contig53996:257..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 258..451 -
1691679608.7837183-CDS-H-elongata_contig53996:257..4511691679608.7837183-CDS-H-elongata_contig53996:257..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 258..451 -
1622930879.2336435-CDS-H-elongata_contig53996:1656..17801622930879.2336435-CDS-H-elongata_contig53996:1656..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 1657..1780 -
1691679608.7971663-CDS-H-elongata_contig53996:1656..17801691679608.7971663-CDS-H-elongata_contig53996:1656..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 1657..1780 -
1622930879.2497993-CDS-H-elongata_contig53996:2189..25611622930879.2497993-CDS-H-elongata_contig53996:2189..2561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 2190..2561 -
1691679608.8083913-CDS-H-elongata_contig53996:2189..25611691679608.8083913-CDS-H-elongata_contig53996:2189..2561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53996 2190..2561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53996.12762.1

>prot_H-elongata_contig53996.12762.1 ID=prot_H-elongata_contig53996.12762.1|Name=mRNA_H-elongata_contig53996.12762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
LPPSNEEVERRAVILDHLERREASFELSDDPVGAIVPREEVYTVFTKRAI
RPWDGPHADRAETHVVVLLSDVFGWEDPFCRSAADQVADVCNAIVLVPDL
FRKRPWDAGRPEEEYEAWRALHNPEVVSADIRACVAYAKAEYKPTSLGLM
GFCYGGGRALEEAVAGVIKPDTVVAFYPTRYDIDLVGSSITCPAAAFFAE
HDVLAGATLHDAQRLRDKLLKNEKVLYTP*
back to top

mRNA from alignment at H-elongata_contig53996:258..2561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53996.12762.1 ID=mRNA_H-elongata_contig53996.12762.1|Name=mRNA_H-elongata_contig53996.12762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2304bp|location=Sequence derived from alignment at H-elongata_contig53996:258..2561- (Himanthalia elongata Himel1 dioecious)
CTACCCCCGTCAAACGAAGAAGTGGAACGCCGTGCGGTCATCCTGGACCA CCTAGAGCGGAGGGAGGCGAGCTTCGAGCTCTCGGACGACCCGGTCGGCG CAATTGTGCCTCGGGAGGAAGTGTACACCGTGTTCACAAAGCGGGCGATT CGGCCGTGGGACGGGCCGCACGCGGACCGGGCAGAGACGCACGTGGTCGT ACTTTTGAGTGACGTCTTCGGGTGGGAGGATCCGTTTTGTAGAAGCGCGG CGGATCAGGTAGCGGACGTGTGTAACGCTATCGTTCTTGTACCAGACCTG TTCCGAAAGCGGCCGTGGGATGCAGGGAGGCCAGAGGAGGAGTACGAGGC CTGGAGAGCTTTGCACAATCCGGTGAACCTTAGAGCTTATTGGACAGCGT GTGGCCTTAAAGGTGGCGGCTGGCAGCTCGGTAACGTTCAGATTATTTTT GAAGAGGCCGTGGCGAGCCTGTCCGGCTTGATGTCAACTCCTCTCAAAAG CCACGGAATCAACCGAACGAACGCACATATGTCGCCTTAACCGCCCCCTC TCCAAATCGTGCACACGGGGCAGACTCCCCGCGCCTTAAAATACACAGCG TCAACACCAGTGATAAAGGAAATGCAACGATGTCAACCTACTGTGTCGTA TTTTTGCCAGACTGGTTTCGAGTTTAGTGCCGTGCTTTCATCTTGGAAGC GACGGCAATGCATGTGTGGTCATTGGCGCTCTAGGGGGTTCCCGTCACCT AAACCATTCGTACCAACGTCTTCCCCCGCAGGAGGTAGTATCTGCCGATA TCCGGGCATGCGTAGCCTACGCTAAGGCGGAGTACAAGCCCACTTCGCTG GGTCTGATGGGTTTCTGCTACGGAGGCGGACGAGCATTAGAGGAAGCGGT AGCAGGTAAATCCGATCGAAACGTAACGTAGCTACATATTATCTCGGTGG TTTGGTTTCCTGACGGTGCAAGGTTGATTTACTTGCAATACGAATCAAGC AACACGGCCTGATTTGTGTTTTTTCAGGGAGATAAGAAATGTGTGAAGTA CGGTTAAGATGTGATTGGAGGCGGCCTTGATAGAGGGGGGGGGGGGGGCT CTTATTTGTTTTTTATAAGGAAAATAAGACTGGGAGTAAGAACTGTGAAG ATGGGTTGGGGGGCGGCTTTGATAAGGGGGGGGGGGGGGCTATAGCGTTT CCTATTGGGGCGGAAGAACTCGTTAACCTAACGTAGCAATAAGGAAGCAC CTCGTCGAAAGCCACTGCAATTTGTACCGGTATCATTGTATAAATTCATA AACGCAAGGTCACGAGCAGCTCGCACCTGCAACAATGATTATCCAAATGG AAGCCTTGCAGCTTGGGGCGCCGCAGGGACTGCGTTTGTCGTACCTGGCG CACATGTTCTCTCTCTTTGCTTCACACCTCCGGAACGCAGGCTTTTAGAT ACCAAGGCTCATGATTTTGTGGTGTGAGCTGCGCTGTGTCTTTTGACTGT GTGTGTCTGTGTGTGTGTGTGCGTGTGTTGTTATCCCGTTTATTCTGTAC GTTAGGCTTGTGGACGCACCAACCGGGGTAGGGTCACGCATGATTTCTCC GCCTTCCTTCTGCGATGCTTGCCTTAAAAATTGTTTGTGAGAAGGATTCA GCGATACCTTTTCCTCGTGGAATGTTGTGTACCCACGAAATTGTTGGTCT CCGCTTGTTGAGCATGATGTACGAAAAAAATCCCAGCTCGTGTGGCTGCG CCGAGGTTCGAACTCACGTCCCAATATCAGAAGGTTTCGAGGTTACCAAC TGAACCACCGAGGCGACCACTCACGGTTTTCGTTGTGCGAGCTGCGCTGT ATCGTTTGGCTGTATCCGTGCACGATTCAAAGCATCATGAGGGAGATATT AACTATTAACCTTGTGCAGTATCCAGCTTTGTGGGTGACGATTTCTCTGA AAGGAAGATAAAACATAAAAACTGTAATTTCCATCAGAGGAAGGAGTGAT CAGATTATTTGTCTTCTGGTTGTCGCGTGCTACGACACTCGATTTTTGCG TCCTTGTATGTTAAGTATTTTTGCGTCCTTGTTGTGCATGTTTACTGTTT GTCATAACAGGCGTGATTAAGCCAGACACCGTAGTGGCCTTCTACCCGAC GCGATACGACATCGACCTTGTCGGTTCGAGCATCACTTGCCCCGCCGCCG CCTTCTTCGCTGAGCACGACGTTCTGGCAGGGGCTACACTTCATGACGCG CAGCGCCTGCGCGATAAACTGTTGAAAAACGAAAAGGTGCTCTATACCCC GTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53996:258..2561-

>mRNA_H-elongata_contig53996.12762.1 ID=mRNA_H-elongata_contig53996.12762.1|Name=mRNA_H-elongata_contig53996.12762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig53996:258..2561- (Himanthalia elongata Himel1 dioecious)
CTACCCCCGTCAAACGAAGAAGTGGAACGCCGTGCGGTCATCCTGGACCA
CCTAGAGCGGAGGGAGGCGAGCTTCGAGCTCTCGGACGACCCGGTCGGCG
CAATTGTGCCTCGGGAGGAAGTGTACACCGTGTTCACAAAGCGGGCGATT
CGGCCGTGGGACGGGCCGCACGCGGACCGGGCAGAGACGCACGTGGTCGT
ACTTTTGAGTGACGTCTTCGGGTGGGAGGATCCGTTTTGTAGAAGCGCGG
CGGATCAGGTAGCGGACGTGTGTAACGCTATCGTTCTTGTACCAGACCTG
TTCCGAAAGCGGCCGTGGGATGCAGGGAGGCCAGAGGAGGAGTACGAGGC
CTGGAGAGCTTTGCACAATCCGCTACCCCCGTCAAACGAAGAAGTGGAAC
GCCGTGCGGTCATCCTGGACCACCTAGAGCGGAGGGAGGCGAGCTTCGAG
CTCTCGGACGACCCGGTCGGCGCAATTGTGCCTCGGGAGGAAGTGTACAC
CGTGTTCACAAAGCGGGCGATTCGGCCGTGGGACGGGCCGCACGCGGACC
GGGCAGAGACGCACGTGGTCGTACTTTTGAGTGACGTCTTCGGGTGGGAG
GATCCGTTTTGTAGAAGCGCGGCGGATCAGGTAGCGGACGTGTGTAACGC
TATCGTTCTTGTACCAGACCTGTTCCGAAAGCGGCCGTGGGATGCAGGGA
GGCCAGAGGAGGAGTACGAGGCCTGGAGAGCTTTGCACAATCCGGAGGTA
GTATCTGCCGATATCCGGGCATGCGTAGCCTACGCTAAGGCGGAGTACAA
GCCCACTTCGCTGGGTCTGATGGGTTTCTGCTACGGAGGCGGACGAGCAT
TAGAGGAAGCGGTAGCAGGAGGTAGTATCTGCCGATATCCGGGCATGCGT
AGCCTACGCTAAGGCGGAGTACAAGCCCACTTCGCTGGGTCTGATGGGTT
TCTGCTACGGAGGCGGACGAGCATTAGAGGAAGCGGTAGCAGGCGTGATT
AAGCCAGACACCGTAGTGGCCTTCTACCCGACGCGATACGACATCGACCT
TGTCGGTTCGAGCATCACTTGCCCCGCCGCCGCCTTCTTCGCTGAGCACG
ACGTTCTGGCAGGGGCTACACTTCATGACGCGCAGCGCCTGCGCGATAAA
CTGTTGAAAAACGAAAAGGTGCTCTATACCCCGTAGGCGTGATTAAGCCA
GACACCGTAGTGGCCTTCTACCCGACGCGATACGACATCGACCTTGTCGG
TTCGAGCATCACTTGCCCCGCCGCCGCCTTCTTCGCTGAGCACGACGTTC
TGGCAGGGGCTACACTTCATGACGCGCAGCGCCTGCGCGATAAACTGTTG
AAAAACGAAAAGGTGCTCTATACCCCGTAG
back to top